data_8AKD
#
_model_server_result.job_id            xj0sbhApKrhnynu6XhnB5g 
_model_server_result.datetime_utc      '2024-11-14 11:40:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8akd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":404}' 
#
_entry.id    8AKD 
#
_exptl.entry_id    8AKD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              106.12 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DI(HYDROXYETHYL)ETHER 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8AKD 
_cell.length_a            91.057 
_cell.length_b            91.057 
_cell.length_c            143.302 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8AKD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,R 1 1 
B,J,K,L,M,N,O,P,Q,S 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 F N N 
? 5 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 135 A CYS 141 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? 
metalc ? metalc2 A SG CYS 138 A CYS 144 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc3 A SG CYS 160 A CYS 166 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? 
metalc ? metalc4 A SG CYS 171 A CYS 177 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? 
metalc ? metalc5 B SG CYS 135 B CYS 141 1_555 L ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc6 B SG CYS 138 B CYS 144 1_555 L ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
metalc ? metalc7 B SG CYS 160 B CYS 166 1_555 L ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc8 B SG CYS 171 B CYS 177 1_555 L ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? 
#
_chem_comp.formula           'C4 H10 O3' 
_chem_comp.formula_weight    106.12 
_chem_comp.id                PEG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DI(HYDROXYETHYL)ETHER 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PEG sing 322 n n 
C1 C2 PEG sing 323 n n 
C1 H11 PEG sing 324 n n 
C1 H12 PEG sing 325 n n 
O1 HO1 PEG sing 326 n n 
C2 O2 PEG sing 327 n n 
C2 H21 PEG sing 328 n n 
C2 H22 PEG sing 329 n n 
O2 C3 PEG sing 330 n n 
C3 C4 PEG sing 331 n n 
C3 H31 PEG sing 332 n n 
C3 H32 PEG sing 333 n n 
C4 O4 PEG sing 334 n n 
C4 H41 PEG sing 335 n n 
C4 H42 PEG sing 336 n n 
O4 HO4 PEG sing 337 n n 
#
_atom_sites.entry_id                     8AKD 
_atom_sites.fract_transf_matrix[1][1]    0.010982 
_atom_sites.fract_transf_matrix[1][2]    0.006341 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012681 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006978 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 AR6 A 1 401 500 AR6 AR6 . 
D 3 ZN A 1 402 501 ZN ZN . 
E 4 HIC A 1 403 502 HIC HIC . 
F 5 PEG A 1 404 503 PEG PEG . 
G 6 SO4 A 1 405 2 SO4 SO4 . 
H 6 SO4 A 1 406 4 SO4 SO4 . 
I 6 SO4 A 1 407 6 SO4 SO4 . 
J 5 PEG B 1 401 503 PEG PEG . 
K 2 AR6 B 1 402 500 AR6 AR6 . 
L 3 ZN B 1 403 501 ZN ZN . 
M 4 HIC B 1 404 502 HIC HIC . 
N 6 SO4 B 1 405 1 SO4 SO4 . 
O 6 SO4 B 1 406 3 SO4 SO4 . 
P 6 SO4 B 1 407 5 SO4 SO4 . 
Q 6 SO4 B 1 408 7 SO4 SO4 . 
R 7 HOH A 1 501 133 HOH HOH . 
R 7 HOH A 2 502 42 HOH HOH . 
R 7 HOH A 3 503 116 HOH HOH . 
R 7 HOH A 4 504 48 HOH HOH . 
R 7 HOH A 5 505 36 HOH HOH . 
R 7 HOH A 6 506 131 HOH HOH . 
R 7 HOH A 7 507 11 HOH HOH . 
R 7 HOH A 8 508 70 HOH HOH . 
R 7 HOH A 9 509 4 HOH HOH . 
R 7 HOH A 10 510 51 HOH HOH . 
R 7 HOH A 11 511 13 HOH HOH . 
R 7 HOH A 12 512 67 HOH HOH . 
R 7 HOH A 13 513 19 HOH HOH . 
R 7 HOH A 14 514 106 HOH HOH . 
R 7 HOH A 15 515 86 HOH HOH . 
R 7 HOH A 16 516 71 HOH HOH . 
R 7 HOH A 17 517 83 HOH HOH . 
R 7 HOH A 18 518 88 HOH HOH . 
R 7 HOH A 19 519 75 HOH HOH . 
R 7 HOH A 20 520 96 HOH HOH . 
R 7 HOH A 21 521 45 HOH HOH . 
R 7 HOH A 22 522 109 HOH HOH . 
R 7 HOH A 23 523 74 HOH HOH . 
R 7 HOH A 24 524 58 HOH HOH . 
R 7 HOH A 25 525 46 HOH HOH . 
R 7 HOH A 26 526 87 HOH HOH . 
R 7 HOH A 27 527 9 HOH HOH . 
R 7 HOH A 28 528 141 HOH HOH . 
R 7 HOH A 29 529 54 HOH HOH . 
R 7 HOH A 30 530 37 HOH HOH . 
R 7 HOH A 31 531 65 HOH HOH . 
R 7 HOH A 32 532 10 HOH HOH . 
R 7 HOH A 33 533 38 HOH HOH . 
R 7 HOH A 34 534 41 HOH HOH . 
R 7 HOH A 35 535 3 HOH HOH . 
R 7 HOH A 36 536 143 HOH HOH . 
R 7 HOH A 37 537 99 HOH HOH . 
R 7 HOH A 38 538 8 HOH HOH . 
R 7 HOH A 39 539 101 HOH HOH . 
R 7 HOH A 40 540 97 HOH HOH . 
R 7 HOH A 41 541 64 HOH HOH . 
R 7 HOH A 42 542 17 HOH HOH . 
R 7 HOH A 43 543 20 HOH HOH . 
R 7 HOH A 44 544 130 HOH HOH . 
R 7 HOH A 45 545 34 HOH HOH . 
R 7 HOH A 46 546 50 HOH HOH . 
R 7 HOH A 47 547 90 HOH HOH . 
R 7 HOH A 48 548 80 HOH HOH . 
R 7 HOH A 49 549 144 HOH HOH . 
R 7 HOH A 50 550 98 HOH HOH . 
R 7 HOH A 51 551 92 HOH HOH . 
R 7 HOH A 52 552 40 HOH HOH . 
R 7 HOH A 53 553 47 HOH HOH . 
R 7 HOH A 54 554 43 HOH HOH . 
R 7 HOH A 55 555 91 HOH HOH . 
R 7 HOH A 56 556 35 HOH HOH . 
R 7 HOH A 57 557 68 HOH HOH . 
R 7 HOH A 58 558 132 HOH HOH . 
R 7 HOH A 59 559 5 HOH HOH . 
R 7 HOH A 60 560 66 HOH HOH . 
R 7 HOH A 61 561 134 HOH HOH . 
R 7 HOH A 62 562 123 HOH HOH . 
R 7 HOH A 63 563 27 HOH HOH . 
R 7 HOH A 64 564 49 HOH HOH . 
R 7 HOH A 65 565 1 HOH HOH . 
R 7 HOH A 66 566 125 HOH HOH . 
R 7 HOH A 67 567 55 HOH HOH . 
R 7 HOH A 68 568 126 HOH HOH . 
R 7 HOH A 69 569 59 HOH HOH . 
R 7 HOH A 70 570 124 HOH HOH . 
R 7 HOH A 71 571 63 HOH HOH . 
R 7 HOH A 72 572 113 HOH HOH . 
R 7 HOH A 73 573 137 HOH HOH . 
R 7 HOH A 74 574 142 HOH HOH . 
R 7 HOH A 75 575 94 HOH HOH . 
R 7 HOH A 76 576 22 HOH HOH . 
R 7 HOH A 77 577 139 HOH HOH . 
R 7 HOH A 78 578 69 HOH HOH . 
R 7 HOH A 79 579 105 HOH HOH . 
R 7 HOH A 80 580 135 HOH HOH . 
R 7 HOH A 81 581 104 HOH HOH . 
R 7 HOH A 82 582 146 HOH HOH . 
R 7 HOH A 83 583 145 HOH HOH . 
R 7 HOH A 84 584 147 HOH HOH . 
S 7 HOH B 1 501 127 HOH HOH . 
S 7 HOH B 2 502 121 HOH HOH . 
S 7 HOH B 3 503 117 HOH HOH . 
S 7 HOH B 4 504 73 HOH HOH . 
S 7 HOH B 5 505 95 HOH HOH . 
S 7 HOH B 6 506 12 HOH HOH . 
S 7 HOH B 7 507 52 HOH HOH . 
S 7 HOH B 8 508 6 HOH HOH . 
S 7 HOH B 9 509 61 HOH HOH . 
S 7 HOH B 10 510 16 HOH HOH . 
S 7 HOH B 11 511 76 HOH HOH . 
S 7 HOH B 12 512 128 HOH HOH . 
S 7 HOH B 13 513 84 HOH HOH . 
S 7 HOH B 14 514 62 HOH HOH . 
S 7 HOH B 15 515 122 HOH HOH . 
S 7 HOH B 16 516 85 HOH HOH . 
S 7 HOH B 17 517 39 HOH HOH . 
S 7 HOH B 18 518 31 HOH HOH . 
S 7 HOH B 19 519 57 HOH HOH . 
S 7 HOH B 20 520 28 HOH HOH . 
S 7 HOH B 21 521 7 HOH HOH . 
S 7 HOH B 22 522 26 HOH HOH . 
S 7 HOH B 23 523 114 HOH HOH . 
S 7 HOH B 24 524 53 HOH HOH . 
S 7 HOH B 25 525 140 HOH HOH . 
S 7 HOH B 26 526 78 HOH HOH . 
S 7 HOH B 27 527 129 HOH HOH . 
S 7 HOH B 28 528 119 HOH HOH . 
S 7 HOH B 29 529 25 HOH HOH . 
S 7 HOH B 30 530 108 HOH HOH . 
S 7 HOH B 31 531 118 HOH HOH . 
S 7 HOH B 32 532 18 HOH HOH . 
S 7 HOH B 33 533 107 HOH HOH . 
S 7 HOH B 34 534 82 HOH HOH . 
S 7 HOH B 35 535 21 HOH HOH . 
S 7 HOH B 36 536 115 HOH HOH . 
S 7 HOH B 37 537 30 HOH HOH . 
S 7 HOH B 38 538 93 HOH HOH . 
S 7 HOH B 39 539 89 HOH HOH . 
S 7 HOH B 40 540 111 HOH HOH . 
S 7 HOH B 41 541 138 HOH HOH . 
S 7 HOH B 42 542 23 HOH HOH . 
S 7 HOH B 43 543 24 HOH HOH . 
S 7 HOH B 44 544 77 HOH HOH . 
S 7 HOH B 45 545 60 HOH HOH . 
S 7 HOH B 46 546 120 HOH HOH . 
S 7 HOH B 47 547 100 HOH HOH . 
S 7 HOH B 48 548 2 HOH HOH . 
S 7 HOH B 49 549 103 HOH HOH . 
S 7 HOH B 50 550 81 HOH HOH . 
S 7 HOH B 51 551 33 HOH HOH . 
S 7 HOH B 52 552 112 HOH HOH . 
S 7 HOH B 53 553 56 HOH HOH . 
S 7 HOH B 54 554 102 HOH HOH . 
S 7 HOH B 55 555 29 HOH HOH . 
S 7 HOH B 56 556 14 HOH HOH . 
S 7 HOH B 57 557 72 HOH HOH . 
S 7 HOH B 58 558 44 HOH HOH . 
S 7 HOH B 59 559 15 HOH HOH . 
S 7 HOH B 60 560 32 HOH HOH . 
S 7 HOH B 61 561 136 HOH HOH . 
S 7 HOH B 62 562 110 HOH HOH . 
S 7 HOH B 63 563 79 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PEG . . . F 5 -33.984 9.159 34.402 1 66.26 ? C1 PEG 404 A 1 
HETATM 2 O O1 PEG . . . F 5 -33.361 9.785 33.297 1 68.19 ? O1 PEG 404 A 1 
HETATM 3 C C2 PEG . . . F 5 -33.435 9.629 35.717 1 64.97 ? C2 PEG 404 A 1 
HETATM 4 O O2 PEG . . . F 5 -34.51 10.06 36.545 1 70.68 ? O2 PEG 404 A 1 
HETATM 5 C C3 PEG . . . F 5 -34.238 9.975 37.941 1 69.58 ? C3 PEG 404 A 1 
HETATM 6 C C4 PEG . . . F 5 -35.511 10.165 38.715 1 71.84 ? C4 PEG 404 A 1 
HETATM 7 O O4 PEG . . . F 5 -35.379 11.078 39.794 1 73.05 ? O4 PEG 404 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           355 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           7 
#