data_8AKE
#
_model_server_result.job_id            1S24oWzGvZmLnZXE1Lmntw 
_model_server_result.datetime_utc      '2024-11-18 04:32:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ake 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":404}' 
#
_entry.id    8AKE 
#
_exptl.entry_id    8AKE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8AKE 
_cell.length_a            91.106 
_cell.length_b            91.106 
_cell.length_c            143.428 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8AKE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,P 1 1 
B,K,L,M,N,O,Q 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 135 A CYS 141 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc2 A SG CYS 138 A CYS 144 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
metalc ? metalc3 A SG CYS 160 A CYS 166 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc4 A SG CYS 171 A CYS 177 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? 
metalc ? metalc5 B SG CYS 135 B CYS 141 1_555 M ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? 
metalc ? metalc6 B SG CYS 138 B CYS 144 1_555 M ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? 
metalc ? metalc7 B SG CYS 160 B CYS 166 1_555 M ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? 
metalc ? metalc8 B SG CYS 171 B CYS 177 1_555 M ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 145 n n 
C1 C2 EDO sing 146 n n 
C1 H11 EDO sing 147 n n 
C1 H12 EDO sing 148 n n 
O1 HO1 EDO sing 149 n n 
C2 O2 EDO sing 150 n n 
C2 H21 EDO sing 151 n n 
C2 H22 EDO sing 152 n n 
O2 HO2 EDO sing 153 n n 
#
_atom_sites.entry_id                     8AKE 
_atom_sites.fract_transf_matrix[1][1]    0.010976 
_atom_sites.fract_transf_matrix[1][2]    0.006337 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012674 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006972 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 AR6 A 1 401 500 AR6 AR6 . 
D 3 ZN A 1 402 501 ZN ZN . 
E 4 NCA A 1 403 502 NCA NCA . 
F 5 EDO A 1 404 504 EDO EDO . 
G 6 PEG A 1 405 503 PEG PEG . 
H 7 SO4 A 1 406 1 SO4 SO4 . 
I 7 SO4 A 1 407 3 SO4 SO4 . 
J 7 SO4 A 1 408 4 SO4 SO4 . 
K 6 PEG B 1 401 505 PEG PEG . 
L 2 AR6 B 1 402 500 AR6 AR6 . 
M 3 ZN B 1 403 501 ZN ZN . 
N 4 NCA B 1 404 502 NCA NCA . 
O 7 SO4 B 1 405 2 SO4 SO4 . 
P 8 HOH A 1 501 25 HOH HOH . 
P 8 HOH A 2 502 80 HOH HOH . 
P 8 HOH A 3 503 41 HOH HOH . 
P 8 HOH A 4 504 48 HOH HOH . 
P 8 HOH A 5 505 20 HOH HOH . 
P 8 HOH A 6 506 76 HOH HOH . 
P 8 HOH A 7 507 84 HOH HOH . 
P 8 HOH A 8 508 96 HOH HOH . 
P 8 HOH A 9 509 36 HOH HOH . 
P 8 HOH A 10 510 32 HOH HOH . 
P 8 HOH A 11 511 92 HOH HOH . 
P 8 HOH A 12 512 94 HOH HOH . 
P 8 HOH A 13 513 55 HOH HOH . 
P 8 HOH A 14 514 13 HOH HOH . 
P 8 HOH A 15 515 46 HOH HOH . 
P 8 HOH A 16 516 33 HOH HOH . 
P 8 HOH A 17 517 22 HOH HOH . 
P 8 HOH A 18 518 79 HOH HOH . 
P 8 HOH A 19 519 26 HOH HOH . 
P 8 HOH A 20 520 69 HOH HOH . 
P 8 HOH A 21 521 73 HOH HOH . 
P 8 HOH A 22 522 64 HOH HOH . 
P 8 HOH A 23 523 82 HOH HOH . 
P 8 HOH A 24 524 87 HOH HOH . 
P 8 HOH A 25 525 58 HOH HOH . 
P 8 HOH A 26 526 34 HOH HOH . 
P 8 HOH A 27 527 10 HOH HOH . 
P 8 HOH A 28 528 77 HOH HOH . 
P 8 HOH A 29 529 52 HOH HOH . 
P 8 HOH A 30 530 24 HOH HOH . 
P 8 HOH A 31 531 27 HOH HOH . 
P 8 HOH A 32 532 6 HOH HOH . 
P 8 HOH A 33 533 8 HOH HOH . 
P 8 HOH A 34 534 65 HOH HOH . 
P 8 HOH A 35 535 2 HOH HOH . 
P 8 HOH A 36 536 44 HOH HOH . 
P 8 HOH A 37 537 61 HOH HOH . 
P 8 HOH A 38 538 28 HOH HOH . 
P 8 HOH A 39 539 35 HOH HOH . 
P 8 HOH A 40 540 93 HOH HOH . 
P 8 HOH A 41 541 38 HOH HOH . 
P 8 HOH A 42 542 50 HOH HOH . 
P 8 HOH A 43 543 29 HOH HOH . 
P 8 HOH A 44 544 31 HOH HOH . 
P 8 HOH A 45 545 1 HOH HOH . 
P 8 HOH A 46 546 5 HOH HOH . 
P 8 HOH A 47 547 37 HOH HOH . 
P 8 HOH A 48 548 75 HOH HOH . 
P 8 HOH A 49 549 81 HOH HOH . 
P 8 HOH A 50 550 59 HOH HOH . 
P 8 HOH A 51 551 42 HOH HOH . 
P 8 HOH A 52 552 19 HOH HOH . 
P 8 HOH A 53 553 95 HOH HOH . 
Q 8 HOH B 1 501 49 HOH HOH . 
Q 8 HOH B 2 502 86 HOH HOH . 
Q 8 HOH B 3 503 85 HOH HOH . 
Q 8 HOH B 4 504 83 HOH HOH . 
Q 8 HOH B 5 505 60 HOH HOH . 
Q 8 HOH B 6 506 45 HOH HOH . 
Q 8 HOH B 7 507 53 HOH HOH . 
Q 8 HOH B 8 508 91 HOH HOH . 
Q 8 HOH B 9 509 90 HOH HOH . 
Q 8 HOH B 10 510 88 HOH HOH . 
Q 8 HOH B 11 511 74 HOH HOH . 
Q 8 HOH B 12 512 63 HOH HOH . 
Q 8 HOH B 13 513 66 HOH HOH . 
Q 8 HOH B 14 514 14 HOH HOH . 
Q 8 HOH B 15 515 18 HOH HOH . 
Q 8 HOH B 16 516 30 HOH HOH . 
Q 8 HOH B 17 517 21 HOH HOH . 
Q 8 HOH B 18 518 39 HOH HOH . 
Q 8 HOH B 19 519 15 HOH HOH . 
Q 8 HOH B 20 520 16 HOH HOH . 
Q 8 HOH B 21 521 56 HOH HOH . 
Q 8 HOH B 22 522 9 HOH HOH . 
Q 8 HOH B 23 523 70 HOH HOH . 
Q 8 HOH B 24 524 71 HOH HOH . 
Q 8 HOH B 25 525 47 HOH HOH . 
Q 8 HOH B 26 526 12 HOH HOH . 
Q 8 HOH B 27 527 57 HOH HOH . 
Q 8 HOH B 28 528 67 HOH HOH . 
Q 8 HOH B 29 529 3 HOH HOH . 
Q 8 HOH B 30 530 40 HOH HOH . 
Q 8 HOH B 31 531 17 HOH HOH . 
Q 8 HOH B 32 532 51 HOH HOH . 
Q 8 HOH B 33 533 62 HOH HOH . 
Q 8 HOH B 34 534 43 HOH HOH . 
Q 8 HOH B 35 535 68 HOH HOH . 
Q 8 HOH B 36 536 78 HOH HOH . 
Q 8 HOH B 37 537 4 HOH HOH . 
Q 8 HOH B 38 538 7 HOH HOH . 
Q 8 HOH B 39 539 72 HOH HOH . 
Q 8 HOH B 40 540 23 HOH HOH . 
Q 8 HOH B 41 541 54 HOH HOH . 
Q 8 HOH B 42 542 89 HOH HOH . 
Q 8 HOH B 43 543 11 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . F 5 -27.758 26.401 12.288 1 44.47 ? C1 EDO 404 A 1 
HETATM 2 O O1 EDO . . . F 5 -26.653 27.273 12.499 1 44.14 ? O1 EDO 404 A 1 
HETATM 3 C C2 EDO . . . F 5 -27.814 25.789 10.921 1 44.06 ? C2 EDO 404 A 1 
HETATM 4 O O2 EDO . . . F 5 -26.776 26.205 10.039 1 45.66 ? O2 EDO 404 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           4 
#