data_8AKF
#
_model_server_result.job_id            oJZZN-Ib-50Fxb0e7dJlTQ 
_model_server_result.datetime_utc      '2024-12-02 08:34:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8akf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":403}' 
#
_entry.id    8AKF 
#
_exptl.entry_id    8AKF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              106.12 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DI(HYDROXYETHYL)ETHER 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8AKF 
_cell.length_a            91.033 
_cell.length_b            91.033 
_cell.length_c            143.095 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8AKF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,U 1 1 
B,M,N,O,P,Q,R,S,T,V 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 135 A CYS 141 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? 
metalc ? metalc2 A SG CYS 138 A CYS 144 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? 
metalc ? metalc3 A SG CYS 160 A CYS 166 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? 
metalc ? metalc4 A SG CYS 171 A CYS 177 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? 
metalc ? metalc5 B SG CYS 135 B CYS 141 1_555 N ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? 
metalc ? metalc6 B SG CYS 138 B CYS 144 1_555 N ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? 
metalc ? metalc7 B SG CYS 160 B CYS 166 1_555 N ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
metalc ? metalc8 B SG CYS 171 B CYS 177 1_555 N ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? 
#
_chem_comp.formula           'C4 H10 O3' 
_chem_comp.formula_weight    106.12 
_chem_comp.id                PEG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DI(HYDROXYETHYL)ETHER 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PEG sing 326 n n 
C1 C2 PEG sing 327 n n 
C1 H11 PEG sing 328 n n 
C1 H12 PEG sing 329 n n 
O1 HO1 PEG sing 330 n n 
C2 O2 PEG sing 331 n n 
C2 H21 PEG sing 332 n n 
C2 H22 PEG sing 333 n n 
O2 C3 PEG sing 334 n n 
C3 C4 PEG sing 335 n n 
C3 H31 PEG sing 336 n n 
C3 H32 PEG sing 337 n n 
C4 O4 PEG sing 338 n n 
C4 H41 PEG sing 339 n n 
C4 H42 PEG sing 340 n n 
O4 HO4 PEG sing 341 n n 
#
_atom_sites.entry_id                     8AKF 
_atom_sites.fract_transf_matrix[1][1]    0.010985 
_atom_sites.fract_transf_matrix[1][2]    0.006342 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012684 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006988 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 AR6 A 1 401 500 AR6 AR6 . 
D 3 ZN A 1 402 501 ZN ZN . 
E 4 PEG A 1 403 502 PEG PEG . 
F 4 PEG A 1 404 502 PEG PEG . 
G 5 SO4 A 1 405 3 SO4 SO4 . 
H 5 SO4 A 1 406 4 SO4 SO4 . 
I 5 SO4 A 1 407 6 SO4 SO4 . 
J 5 SO4 A 1 408 7 SO4 SO4 . 
K 6 3AB A 1 409 1 3AB 3AB . 
L 7 CL A 1 410 1 CL CL . 
M 2 AR6 B 1 401 500 AR6 AR6 . 
N 3 ZN B 1 402 501 ZN ZN . 
O 8 EDO B 1 403 503 EDO EDO . 
P 5 SO4 B 1 404 1 SO4 SO4 . 
Q 5 SO4 B 1 405 2 SO4 SO4 . 
R 5 SO4 B 1 406 5 SO4 SO4 . 
S 5 SO4 B 1 407 8 SO4 SO4 . 
T 6 3AB B 1 408 2 3AB 3AB . 
U 9 HOH A 1 501 32 HOH HOH . 
U 9 HOH A 2 502 23 HOH HOH . 
U 9 HOH A 3 503 11 HOH HOH . 
U 9 HOH A 4 504 7 HOH HOH . 
U 9 HOH A 5 505 48 HOH HOH . 
U 9 HOH A 6 506 39 HOH HOH . 
U 9 HOH A 7 507 27 HOH HOH . 
U 9 HOH A 8 508 14 HOH HOH . 
U 9 HOH A 9 509 5 HOH HOH . 
U 9 HOH A 10 510 30 HOH HOH . 
U 9 HOH A 11 511 36 HOH HOH . 
U 9 HOH A 12 512 45 HOH HOH . 
U 9 HOH A 13 513 19 HOH HOH . 
U 9 HOH A 14 514 25 HOH HOH . 
U 9 HOH A 15 515 15 HOH HOH . 
U 9 HOH A 16 516 42 HOH HOH . 
U 9 HOH A 17 517 50 HOH HOH . 
U 9 HOH A 18 518 49 HOH HOH . 
U 9 HOH A 19 519 46 HOH HOH . 
U 9 HOH A 20 520 44 HOH HOH . 
U 9 HOH A 21 521 31 HOH HOH . 
U 9 HOH A 22 522 16 HOH HOH . 
U 9 HOH A 23 523 20 HOH HOH . 
U 9 HOH A 24 524 38 HOH HOH . 
U 9 HOH A 25 525 1 HOH HOH . 
U 9 HOH A 26 526 4 HOH HOH . 
U 9 HOH A 27 527 43 HOH HOH . 
U 9 HOH A 28 528 21 HOH HOH . 
V 9 HOH B 1 501 33 HOH HOH . 
V 9 HOH B 2 502 47 HOH HOH . 
V 9 HOH B 3 503 12 HOH HOH . 
V 9 HOH B 4 504 10 HOH HOH . 
V 9 HOH B 5 505 17 HOH HOH . 
V 9 HOH B 6 506 22 HOH HOH . 
V 9 HOH B 7 507 37 HOH HOH . 
V 9 HOH B 8 508 8 HOH HOH . 
V 9 HOH B 9 509 24 HOH HOH . 
V 9 HOH B 10 510 9 HOH HOH . 
V 9 HOH B 11 511 18 HOH HOH . 
V 9 HOH B 12 512 13 HOH HOH . 
V 9 HOH B 13 513 28 HOH HOH . 
V 9 HOH B 14 514 29 HOH HOH . 
V 9 HOH B 15 515 41 HOH HOH . 
V 9 HOH B 16 516 2 HOH HOH . 
V 9 HOH B 17 517 26 HOH HOH . 
V 9 HOH B 18 518 34 HOH HOH . 
V 9 HOH B 19 519 3 HOH HOH . 
V 9 HOH B 20 520 35 HOH HOH . 
V 9 HOH B 21 521 40 HOH HOH . 
V 9 HOH B 22 522 51 HOH HOH . 
V 9 HOH B 23 523 6 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PEG . . . E 4 -21.274 28.119 25.977 1 45.21 ? C1 PEG 403 A 1 
HETATM 2 O O1 PEG . . . E 4 -20.405 27.402 26.849 1 41.24 ? O1 PEG 403 A 1 
HETATM 3 C C2 PEG . . . E 4 -20.819 27.988 24.572 1 44.38 ? C2 PEG 403 A 1 
HETATM 4 O O2 PEG . . . E 4 -21.785 28.544 23.691 1 46.31 ? O2 PEG 403 A 1 
HETATM 5 C C3 PEG . . . E 4 -21.202 29.27 22.611 1 44.15 ? C3 PEG 403 A 1 
HETATM 6 C C4 PEG . . . E 4 -21.928 28.978 21.344 1 40.2 ? C4 PEG 403 A 1 
HETATM 7 O O4 PEG . . . E 4 -21.094 29.105 20.2 1 39.57 ? O4 PEG 403 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           7 
#