data_8AKG # _model_server_result.job_id lrZI9TJigkn7ZQzCUQQAyw _model_server_result.datetime_utc '2024-10-11 08:25:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8akg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":403}' # _entry.id 8AKG # _exptl.entry_id 8AKG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8AKG _cell.length_a 91.132 _cell.length_b 91.132 _cell.length_c 143.282 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AKG _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,BA 1 1 B,Q,R,S,T,U,V,W,X,Y,Z,AA,CA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 135 A CYS 141 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc2 A SG CYS 138 A CYS 144 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc3 A SG CYS 160 A CYS 166 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc4 A SG CYS 171 A CYS 177 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc5 B SG CYS 135 B CYS 141 1_555 S ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc6 B SG CYS 138 B CYS 144 1_555 S ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc7 B SG CYS 160 B CYS 166 1_555 S ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc8 B SG CYS 171 B CYS 177 1_555 S ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 348 n n O1 HO1 PG4 sing 349 n n C1 C2 PG4 sing 350 n n C1 H11 PG4 sing 351 n n C1 H12 PG4 sing 352 n n C2 O2 PG4 sing 353 n n C2 H21 PG4 sing 354 n n C2 H22 PG4 sing 355 n n O2 C3 PG4 sing 356 n n C3 C4 PG4 sing 357 n n C3 H31 PG4 sing 358 n n C3 H32 PG4 sing 359 n n C4 O3 PG4 sing 360 n n C4 H41 PG4 sing 361 n n C4 H42 PG4 sing 362 n n O3 C5 PG4 sing 363 n n C5 C6 PG4 sing 364 n n C5 H51 PG4 sing 365 n n C5 H52 PG4 sing 366 n n C6 O4 PG4 sing 367 n n C6 H61 PG4 sing 368 n n C6 H62 PG4 sing 369 n n O4 C7 PG4 sing 370 n n C7 C8 PG4 sing 371 n n C7 H71 PG4 sing 372 n n C7 H72 PG4 sing 373 n n C8 O5 PG4 sing 374 n n C8 H81 PG4 sing 375 n n C8 H82 PG4 sing 376 n n O5 HO5 PG4 sing 377 n n # _atom_sites.entry_id 8AKG _atom_sites.fract_transf_matrix[1][1] 0.010973 _atom_sites.fract_transf_matrix[1][2] 0.006335 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012671 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006979 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AR6 A 1 401 500 AR6 AR6 . D 3 ZN A 1 402 501 ZN ZN . E 4 PG4 A 1 403 502 PG4 PG4 . F 5 EDO A 1 404 504 EDO EDO . G 6 PEG A 1 405 503 PEG PEG . H 7 SO4 A 1 406 1 SO4 SO4 . I 7 SO4 A 1 407 3 SO4 SO4 . J 7 SO4 A 1 408 4 SO4 SO4 . K 7 SO4 A 1 409 5 SO4 SO4 . L 7 SO4 A 1 410 7 SO4 SO4 . M 7 SO4 A 1 411 9 SO4 SO4 . N 7 SO4 A 1 412 11 SO4 SO4 . O 8 I7B A 1 413 1 I7B I7B . P 9 CL A 1 414 2 CL CL . Q 5 EDO B 1 401 503 EDO EDO . R 2 AR6 B 1 402 500 AR6 AR6 . S 3 ZN B 1 403 501 ZN ZN . T 4 PG4 B 1 404 502 PG4 PG4 . U 7 SO4 B 1 405 2 SO4 SO4 . V 7 SO4 B 1 406 6 SO4 SO4 . W 7 SO4 B 1 407 8 SO4 SO4 . X 7 SO4 B 1 408 10 SO4 SO4 . Y 7 SO4 B 1 409 12 SO4 SO4 . Z 8 I7B B 1 410 2 I7B I7B . AA 9 CL B 1 411 1 CL CL . BA 10 HOH A 1 501 116 HOH HOH . BA 10 HOH A 2 502 178 HOH HOH . BA 10 HOH A 3 503 110 HOH HOH . BA 10 HOH A 4 504 11 HOH HOH . BA 10 HOH A 5 505 73 HOH HOH . BA 10 HOH A 6 506 100 HOH HOH . BA 10 HOH A 7 507 139 HOH HOH . BA 10 HOH A 8 508 76 HOH HOH . BA 10 HOH A 9 509 117 HOH HOH . BA 10 HOH A 10 510 158 HOH HOH . BA 10 HOH A 11 511 8 HOH HOH . BA 10 HOH A 12 512 135 HOH HOH . BA 10 HOH A 13 513 54 HOH HOH . BA 10 HOH A 14 514 20 HOH HOH . BA 10 HOH A 15 515 13 HOH HOH . BA 10 HOH A 16 516 27 HOH HOH . BA 10 HOH A 17 517 109 HOH HOH . BA 10 HOH A 18 518 31 HOH HOH . BA 10 HOH A 19 519 25 HOH HOH . BA 10 HOH A 20 520 16 HOH HOH . BA 10 HOH A 21 521 154 HOH HOH . BA 10 HOH A 22 522 162 HOH HOH . BA 10 HOH A 23 523 97 HOH HOH . BA 10 HOH A 24 524 159 HOH HOH . BA 10 HOH A 25 525 7 HOH HOH . BA 10 HOH A 26 526 50 HOH HOH . BA 10 HOH A 27 527 36 HOH HOH . BA 10 HOH A 28 528 34 HOH HOH . BA 10 HOH A 29 529 174 HOH HOH . BA 10 HOH A 30 530 157 HOH HOH . BA 10 HOH A 31 531 123 HOH HOH . BA 10 HOH A 32 532 74 HOH HOH . BA 10 HOH A 33 533 99 HOH HOH . BA 10 HOH A 34 534 136 HOH HOH . BA 10 HOH A 35 535 63 HOH HOH . BA 10 HOH A 36 536 168 HOH HOH . BA 10 HOH A 37 537 46 HOH HOH . BA 10 HOH A 38 538 41 HOH HOH . BA 10 HOH A 39 539 177 HOH HOH . BA 10 HOH A 40 540 87 HOH HOH . BA 10 HOH A 41 541 57 HOH HOH . BA 10 HOH A 42 542 65 HOH HOH . BA 10 HOH A 43 543 69 HOH HOH . BA 10 HOH A 44 544 52 HOH HOH . BA 10 HOH A 45 545 44 HOH HOH . BA 10 HOH A 46 546 163 HOH HOH . BA 10 HOH A 47 547 22 HOH HOH . BA 10 HOH A 48 548 42 HOH HOH . BA 10 HOH A 49 549 170 HOH HOH . BA 10 HOH A 50 550 98 HOH HOH . BA 10 HOH A 51 551 83 HOH HOH . BA 10 HOH A 52 552 17 HOH HOH . BA 10 HOH A 53 553 166 HOH HOH . BA 10 HOH A 54 554 51 HOH HOH . BA 10 HOH A 55 555 64 HOH HOH . BA 10 HOH A 56 556 26 HOH HOH . BA 10 HOH A 57 557 75 HOH HOH . BA 10 HOH A 58 558 68 HOH HOH . BA 10 HOH A 59 559 131 HOH HOH . BA 10 HOH A 60 560 81 HOH HOH . BA 10 HOH A 61 561 33 HOH HOH . BA 10 HOH A 62 562 92 HOH HOH . BA 10 HOH A 63 563 164 HOH HOH . BA 10 HOH A 64 564 94 HOH HOH . BA 10 HOH A 65 565 2 HOH HOH . BA 10 HOH A 66 566 37 HOH HOH . BA 10 HOH A 67 567 124 HOH HOH . BA 10 HOH A 68 568 138 HOH HOH . BA 10 HOH A 69 569 142 HOH HOH . BA 10 HOH A 70 570 77 HOH HOH . BA 10 HOH A 71 571 140 HOH HOH . BA 10 HOH A 72 572 49 HOH HOH . BA 10 HOH A 73 573 160 HOH HOH . BA 10 HOH A 74 574 130 HOH HOH . BA 10 HOH A 75 575 121 HOH HOH . BA 10 HOH A 76 576 55 HOH HOH . BA 10 HOH A 77 577 60 HOH HOH . BA 10 HOH A 78 578 146 HOH HOH . BA 10 HOH A 79 579 14 HOH HOH . BA 10 HOH A 80 580 59 HOH HOH . BA 10 HOH A 81 581 1 HOH HOH . BA 10 HOH A 82 582 47 HOH HOH . BA 10 HOH A 83 583 23 HOH HOH . BA 10 HOH A 84 584 96 HOH HOH . BA 10 HOH A 85 585 126 HOH HOH . BA 10 HOH A 86 586 61 HOH HOH . BA 10 HOH A 87 587 80 HOH HOH . BA 10 HOH A 88 588 167 HOH HOH . BA 10 HOH A 89 589 120 HOH HOH . BA 10 HOH A 90 590 141 HOH HOH . BA 10 HOH A 91 591 128 HOH HOH . BA 10 HOH A 92 592 102 HOH HOH . BA 10 HOH A 93 593 152 HOH HOH . BA 10 HOH A 94 594 90 HOH HOH . BA 10 HOH A 95 595 179 HOH HOH . BA 10 HOH A 96 596 103 HOH HOH . BA 10 HOH A 97 597 165 HOH HOH . BA 10 HOH A 98 598 181 HOH HOH . BA 10 HOH A 99 599 150 HOH HOH . BA 10 HOH A 100 600 169 HOH HOH . BA 10 HOH A 101 601 180 HOH HOH . CA 10 HOH B 1 501 115 HOH HOH . CA 10 HOH B 2 502 85 HOH HOH . CA 10 HOH B 3 503 58 HOH HOH . CA 10 HOH B 4 504 112 HOH HOH . CA 10 HOH B 5 505 62 HOH HOH . CA 10 HOH B 6 506 143 HOH HOH . CA 10 HOH B 7 507 12 HOH HOH . CA 10 HOH B 8 508 113 HOH HOH . CA 10 HOH B 9 509 10 HOH HOH . CA 10 HOH B 10 510 134 HOH HOH . CA 10 HOH B 11 511 107 HOH HOH . CA 10 HOH B 12 512 173 HOH HOH . CA 10 HOH B 13 513 18 HOH HOH . CA 10 HOH B 14 514 82 HOH HOH . CA 10 HOH B 15 515 6 HOH HOH . CA 10 HOH B 16 516 132 HOH HOH . CA 10 HOH B 17 517 161 HOH HOH . CA 10 HOH B 18 518 122 HOH HOH . CA 10 HOH B 19 519 24 HOH HOH . CA 10 HOH B 20 520 71 HOH HOH . CA 10 HOH B 21 521 79 HOH HOH . CA 10 HOH B 22 522 147 HOH HOH . CA 10 HOH B 23 523 133 HOH HOH . CA 10 HOH B 24 524 118 HOH HOH . CA 10 HOH B 25 525 171 HOH HOH . CA 10 HOH B 26 526 48 HOH HOH . CA 10 HOH B 27 527 56 HOH HOH . CA 10 HOH B 28 528 5 HOH HOH . CA 10 HOH B 29 529 21 HOH HOH . CA 10 HOH B 30 530 176 HOH HOH . CA 10 HOH B 31 531 127 HOH HOH . CA 10 HOH B 32 532 105 HOH HOH . CA 10 HOH B 33 533 39 HOH HOH . CA 10 HOH B 34 534 43 HOH HOH . CA 10 HOH B 35 535 153 HOH HOH . CA 10 HOH B 36 536 9 HOH HOH . CA 10 HOH B 37 537 156 HOH HOH . CA 10 HOH B 38 538 35 HOH HOH . CA 10 HOH B 39 539 106 HOH HOH . CA 10 HOH B 40 540 45 HOH HOH . CA 10 HOH B 41 541 95 HOH HOH . CA 10 HOH B 42 542 84 HOH HOH . CA 10 HOH B 43 543 111 HOH HOH . CA 10 HOH B 44 544 19 HOH HOH . CA 10 HOH B 45 545 175 HOH HOH . CA 10 HOH B 46 546 129 HOH HOH . CA 10 HOH B 47 547 4 HOH HOH . CA 10 HOH B 48 548 86 HOH HOH . CA 10 HOH B 49 549 53 HOH HOH . CA 10 HOH B 50 550 40 HOH HOH . CA 10 HOH B 51 551 119 HOH HOH . CA 10 HOH B 52 552 15 HOH HOH . CA 10 HOH B 53 553 30 HOH HOH . CA 10 HOH B 54 554 93 HOH HOH . CA 10 HOH B 55 555 38 HOH HOH . CA 10 HOH B 56 556 66 HOH HOH . CA 10 HOH B 57 557 91 HOH HOH . CA 10 HOH B 58 558 89 HOH HOH . CA 10 HOH B 59 559 125 HOH HOH . CA 10 HOH B 60 560 3 HOH HOH . CA 10 HOH B 61 561 28 HOH HOH . CA 10 HOH B 62 562 101 HOH HOH . CA 10 HOH B 63 563 78 HOH HOH . CA 10 HOH B 64 564 32 HOH HOH . CA 10 HOH B 65 565 144 HOH HOH . CA 10 HOH B 66 566 29 HOH HOH . CA 10 HOH B 67 567 145 HOH HOH . CA 10 HOH B 68 568 88 HOH HOH . CA 10 HOH B 69 569 70 HOH HOH . CA 10 HOH B 70 570 137 HOH HOH . CA 10 HOH B 71 571 67 HOH HOH . CA 10 HOH B 72 572 172 HOH HOH . CA 10 HOH B 73 573 114 HOH HOH . CA 10 HOH B 74 574 72 HOH HOH . CA 10 HOH B 75 575 104 HOH HOH . CA 10 HOH B 76 576 108 HOH HOH . CA 10 HOH B 77 577 149 HOH HOH . CA 10 HOH B 78 578 151 HOH HOH . CA 10 HOH B 79 579 148 HOH HOH . CA 10 HOH B 80 580 155 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . E 4 -26.631 26.415 13.238 1 49.82 ? O1 PG4 403 A 1 HETATM 2 C C1 PG4 . . . E 4 -27.782 26.453 12.413 1 53.7 ? C1 PG4 403 A 1 HETATM 3 C C2 PG4 . . . E 4 -27.448 26.764 10.991 1 49.85 ? C2 PG4 403 A 1 HETATM 4 O O2 PG4 . . . E 4 -26.763 25.655 10.423 1 43.14 ? O2 PG4 403 A 1 HETATM 5 C C3 PG4 . . . E 4 -26.86 25.588 9.006 1 44.27 ? C3 PG4 403 A 1 HETATM 6 C C4 PG4 . . . E 4 -26.531 24.2 8.544 1 40.2 ? C4 PG4 403 A 1 HETATM 7 O O3 PG4 . . . E 4 -27.724 23.495 8.198 1 51.2 ? O3 PG4 403 A 1 HETATM 8 C C5 PG4 . . . E 4 -27.462 22.188 7.684 1 45.53 ? C5 PG4 403 A 1 HETATM 9 C C6 PG4 . . . E 4 -28.453 21.851 6.615 1 51.87 ? C6 PG4 403 A 1 HETATM 10 O O4 PG4 . . . E 4 -27.907 22.085 5.32 1 55.53 ? O4 PG4 403 A 1 HETATM 11 C C7 PG4 . . . E 4 -28.9 22.04 4.297 1 60.81 ? C7 PG4 403 A 1 HETATM 12 C C8 PG4 . . . E 4 -28.26 22.054 2.935 1 59.62 ? C8 PG4 403 A 1 HETATM 13 O O5 PG4 . . . E 4 -28.792 23.059 2.083 1 61.08 ? O5 PG4 403 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 13 #