data_8AKI # _model_server_result.job_id dW69BzU-BI_w2C0NuD9K7w _model_server_result.datetime_utc '2024-11-23 20:35:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8aki # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":306}' # _entry.id 8AKI # _exptl.entry_id 8AKI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8AKI _cell.length_a 60.513 _cell.length_b 79.378 _cell.length_c 56.208 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AKI _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 65 A CYS 69 1_555 A SG CYS 234 A CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? covale ? covale1 A OG SER 66 A SER 70 1_555 B C15 AIX . A AIX 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.393 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 175 n n C1 C2 GOL sing 176 n n C1 H11 GOL sing 177 n n C1 H12 GOL sing 178 n n O1 HO1 GOL sing 179 n n C2 O2 GOL sing 180 n n C2 C3 GOL sing 181 n n C2 H2 GOL sing 182 n n O2 HO2 GOL sing 183 n n C3 O3 GOL sing 184 n n C3 H31 GOL sing 185 n n C3 H32 GOL sing 186 n n O3 HO3 GOL sing 187 n n # _atom_sites.entry_id 8AKI _atom_sites.fract_transf_matrix[1][1] 0.016525 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012598 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017791 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AIX A 1 301 301 AIX AMP . C 3 SO4 A 1 302 1 SO4 SO4 . D 3 SO4 A 1 303 2 SO4 SO4 . E 3 SO4 A 1 304 3 SO4 SO4 . F 3 SO4 A 1 305 4 SO4 SO4 . G 4 GOL A 1 306 1 GOL GOL . H 5 HOH A 1 401 263 HOH HOH . H 5 HOH A 2 402 199 HOH HOH . H 5 HOH A 3 403 56 HOH HOH . H 5 HOH A 4 404 190 HOH HOH . H 5 HOH A 5 405 163 HOH HOH . H 5 HOH A 6 406 154 HOH HOH . H 5 HOH A 7 407 262 HOH HOH . H 5 HOH A 8 408 219 HOH HOH . H 5 HOH A 9 409 206 HOH HOH . H 5 HOH A 10 410 82 HOH HOH . H 5 HOH A 11 411 125 HOH HOH . H 5 HOH A 12 412 132 HOH HOH . H 5 HOH A 13 413 216 HOH HOH . H 5 HOH A 14 414 159 HOH HOH . H 5 HOH A 15 415 104 HOH HOH . H 5 HOH A 16 416 236 HOH HOH . H 5 HOH A 17 417 40 HOH HOH . H 5 HOH A 18 418 2 HOH HOH . H 5 HOH A 19 419 77 HOH HOH . H 5 HOH A 20 420 204 HOH HOH . H 5 HOH A 21 421 49 HOH HOH . H 5 HOH A 22 422 220 HOH HOH . H 5 HOH A 23 423 24 HOH HOH . H 5 HOH A 24 424 23 HOH HOH . H 5 HOH A 25 425 258 HOH HOH . H 5 HOH A 26 426 3 HOH HOH . H 5 HOH A 27 427 235 HOH HOH . H 5 HOH A 28 428 110 HOH HOH . H 5 HOH A 29 429 155 HOH HOH . H 5 HOH A 30 430 33 HOH HOH . H 5 HOH A 31 431 120 HOH HOH . H 5 HOH A 32 432 79 HOH HOH . H 5 HOH A 33 433 245 HOH HOH . H 5 HOH A 34 434 26 HOH HOH . H 5 HOH A 35 435 29 HOH HOH . H 5 HOH A 36 436 14 HOH HOH . H 5 HOH A 37 437 72 HOH HOH . H 5 HOH A 38 438 137 HOH HOH . H 5 HOH A 39 439 4 HOH HOH . H 5 HOH A 40 440 57 HOH HOH . H 5 HOH A 41 441 134 HOH HOH . H 5 HOH A 42 442 171 HOH HOH . H 5 HOH A 43 443 74 HOH HOH . H 5 HOH A 44 444 44 HOH HOH . H 5 HOH A 45 445 69 HOH HOH . H 5 HOH A 46 446 90 HOH HOH . H 5 HOH A 47 447 34 HOH HOH . H 5 HOH A 48 448 184 HOH HOH . H 5 HOH A 49 449 73 HOH HOH . H 5 HOH A 50 450 83 HOH HOH . H 5 HOH A 51 451 96 HOH HOH . H 5 HOH A 52 452 223 HOH HOH . H 5 HOH A 53 453 124 HOH HOH . H 5 HOH A 54 454 241 HOH HOH . H 5 HOH A 55 455 6 HOH HOH . H 5 HOH A 56 456 1 HOH HOH . H 5 HOH A 57 457 211 HOH HOH . H 5 HOH A 58 458 39 HOH HOH . H 5 HOH A 59 459 28 HOH HOH . H 5 HOH A 60 460 10 HOH HOH . H 5 HOH A 61 461 135 HOH HOH . H 5 HOH A 62 462 202 HOH HOH . H 5 HOH A 63 463 153 HOH HOH . H 5 HOH A 64 464 181 HOH HOH . H 5 HOH A 65 465 209 HOH HOH . H 5 HOH A 66 466 25 HOH HOH . H 5 HOH A 67 467 5 HOH HOH . H 5 HOH A 68 468 37 HOH HOH . H 5 HOH A 69 469 61 HOH HOH . H 5 HOH A 70 470 15 HOH HOH . H 5 HOH A 71 471 52 HOH HOH . H 5 HOH A 72 472 157 HOH HOH . H 5 HOH A 73 473 67 HOH HOH . H 5 HOH A 74 474 239 HOH HOH . H 5 HOH A 75 475 145 HOH HOH . H 5 HOH A 76 476 114 HOH HOH . H 5 HOH A 77 477 99 HOH HOH . H 5 HOH A 78 478 12 HOH HOH . H 5 HOH A 79 479 224 HOH HOH . H 5 HOH A 80 480 133 HOH HOH . H 5 HOH A 81 481 165 HOH HOH . H 5 HOH A 82 482 30 HOH HOH . H 5 HOH A 83 483 65 HOH HOH . H 5 HOH A 84 484 16 HOH HOH . H 5 HOH A 85 485 238 HOH HOH . H 5 HOH A 86 486 186 HOH HOH . H 5 HOH A 87 487 242 HOH HOH . H 5 HOH A 88 488 51 HOH HOH . H 5 HOH A 89 489 158 HOH HOH . H 5 HOH A 90 490 9 HOH HOH . H 5 HOH A 91 491 47 HOH HOH . H 5 HOH A 92 492 13 HOH HOH . H 5 HOH A 93 493 217 HOH HOH . H 5 HOH A 94 494 225 HOH HOH . H 5 HOH A 95 495 92 HOH HOH . H 5 HOH A 96 496 246 HOH HOH . H 5 HOH A 97 497 142 HOH HOH . H 5 HOH A 98 498 119 HOH HOH . H 5 HOH A 99 499 58 HOH HOH . H 5 HOH A 100 500 7 HOH HOH . H 5 HOH A 101 501 139 HOH HOH . H 5 HOH A 102 502 208 HOH HOH . H 5 HOH A 103 503 207 HOH HOH . H 5 HOH A 104 504 231 HOH HOH . H 5 HOH A 105 505 59 HOH HOH . H 5 HOH A 106 506 115 HOH HOH . H 5 HOH A 107 507 66 HOH HOH . H 5 HOH A 108 508 256 HOH HOH . H 5 HOH A 109 509 95 HOH HOH . H 5 HOH A 110 510 93 HOH HOH . H 5 HOH A 111 511 11 HOH HOH . H 5 HOH A 112 512 81 HOH HOH . H 5 HOH A 113 513 109 HOH HOH . H 5 HOH A 114 514 45 HOH HOH . H 5 HOH A 115 515 193 HOH HOH . H 5 HOH A 116 516 60 HOH HOH . H 5 HOH A 117 517 151 HOH HOH . H 5 HOH A 118 518 228 HOH HOH . H 5 HOH A 119 519 147 HOH HOH . H 5 HOH A 120 520 148 HOH HOH . H 5 HOH A 121 521 36 HOH HOH . H 5 HOH A 122 522 252 HOH HOH . H 5 HOH A 123 523 53 HOH HOH . H 5 HOH A 124 524 21 HOH HOH . H 5 HOH A 125 525 230 HOH HOH . H 5 HOH A 126 526 103 HOH HOH . H 5 HOH A 127 527 172 HOH HOH . H 5 HOH A 128 528 31 HOH HOH . H 5 HOH A 129 529 243 HOH HOH . H 5 HOH A 130 530 150 HOH HOH . H 5 HOH A 131 531 97 HOH HOH . H 5 HOH A 132 532 167 HOH HOH . H 5 HOH A 133 533 144 HOH HOH . H 5 HOH A 134 534 43 HOH HOH . H 5 HOH A 135 535 98 HOH HOH . H 5 HOH A 136 536 50 HOH HOH . H 5 HOH A 137 537 182 HOH HOH . H 5 HOH A 138 538 63 HOH HOH . H 5 HOH A 139 539 89 HOH HOH . H 5 HOH A 140 540 102 HOH HOH . H 5 HOH A 141 541 128 HOH HOH . H 5 HOH A 142 542 173 HOH HOH . H 5 HOH A 143 543 8 HOH HOH . H 5 HOH A 144 544 35 HOH HOH . H 5 HOH A 145 545 27 HOH HOH . H 5 HOH A 146 546 166 HOH HOH . H 5 HOH A 147 547 105 HOH HOH . H 5 HOH A 148 548 192 HOH HOH . H 5 HOH A 149 549 32 HOH HOH . H 5 HOH A 150 550 76 HOH HOH . H 5 HOH A 151 551 212 HOH HOH . H 5 HOH A 152 552 183 HOH HOH . H 5 HOH A 153 553 17 HOH HOH . H 5 HOH A 154 554 48 HOH HOH . H 5 HOH A 155 555 140 HOH HOH . H 5 HOH A 156 556 111 HOH HOH . H 5 HOH A 157 557 180 HOH HOH . H 5 HOH A 158 558 100 HOH HOH . H 5 HOH A 159 559 55 HOH HOH . H 5 HOH A 160 560 254 HOH HOH . H 5 HOH A 161 561 168 HOH HOH . H 5 HOH A 162 562 101 HOH HOH . H 5 HOH A 163 563 70 HOH HOH . H 5 HOH A 164 564 62 HOH HOH . H 5 HOH A 165 565 46 HOH HOH . H 5 HOH A 166 566 54 HOH HOH . H 5 HOH A 167 567 185 HOH HOH . H 5 HOH A 168 568 94 HOH HOH . H 5 HOH A 169 569 250 HOH HOH . H 5 HOH A 170 570 248 HOH HOH . H 5 HOH A 171 571 118 HOH HOH . H 5 HOH A 172 572 121 HOH HOH . H 5 HOH A 173 573 116 HOH HOH . H 5 HOH A 174 574 188 HOH HOH . H 5 HOH A 175 575 38 HOH HOH . H 5 HOH A 176 576 141 HOH HOH . H 5 HOH A 177 577 41 HOH HOH . H 5 HOH A 178 578 255 HOH HOH . H 5 HOH A 179 579 20 HOH HOH . H 5 HOH A 180 580 259 HOH HOH . H 5 HOH A 181 581 195 HOH HOH . H 5 HOH A 182 582 68 HOH HOH . H 5 HOH A 183 583 85 HOH HOH . H 5 HOH A 184 584 191 HOH HOH . H 5 HOH A 185 585 91 HOH HOH . H 5 HOH A 186 586 88 HOH HOH . H 5 HOH A 187 587 22 HOH HOH . H 5 HOH A 188 588 117 HOH HOH . H 5 HOH A 189 589 18 HOH HOH . H 5 HOH A 190 590 87 HOH HOH . H 5 HOH A 191 591 126 HOH HOH . H 5 HOH A 192 592 84 HOH HOH . H 5 HOH A 193 593 221 HOH HOH . H 5 HOH A 194 594 249 HOH HOH . H 5 HOH A 195 595 247 HOH HOH . H 5 HOH A 196 596 130 HOH HOH . H 5 HOH A 197 597 213 HOH HOH . H 5 HOH A 198 598 218 HOH HOH . H 5 HOH A 199 599 123 HOH HOH . H 5 HOH A 200 600 201 HOH HOH . H 5 HOH A 201 601 210 HOH HOH . H 5 HOH A 202 602 112 HOH HOH . H 5 HOH A 203 603 161 HOH HOH . H 5 HOH A 204 604 222 HOH HOH . H 5 HOH A 205 605 169 HOH HOH . H 5 HOH A 206 606 146 HOH HOH . H 5 HOH A 207 607 160 HOH HOH . H 5 HOH A 208 608 176 HOH HOH . H 5 HOH A 209 609 234 HOH HOH . H 5 HOH A 210 610 179 HOH HOH . H 5 HOH A 211 611 240 HOH HOH . H 5 HOH A 212 612 200 HOH HOH . H 5 HOH A 213 613 178 HOH HOH . H 5 HOH A 214 614 149 HOH HOH . H 5 HOH A 215 615 107 HOH HOH . H 5 HOH A 216 616 156 HOH HOH . H 5 HOH A 217 617 170 HOH HOH . H 5 HOH A 218 618 71 HOH HOH . H 5 HOH A 219 619 257 HOH HOH . H 5 HOH A 220 620 162 HOH HOH . H 5 HOH A 221 621 42 HOH HOH . H 5 HOH A 222 622 19 HOH HOH . H 5 HOH A 223 623 226 HOH HOH . H 5 HOH A 224 624 261 HOH HOH . H 5 HOH A 225 625 177 HOH HOH . H 5 HOH A 226 626 260 HOH HOH . H 5 HOH A 227 627 198 HOH HOH . H 5 HOH A 228 628 196 HOH HOH . H 5 HOH A 229 629 187 HOH HOH . H 5 HOH A 230 630 197 HOH HOH . H 5 HOH A 231 631 251 HOH HOH . H 5 HOH A 232 632 78 HOH HOH . H 5 HOH A 233 633 143 HOH HOH . H 5 HOH A 234 634 64 HOH HOH . H 5 HOH A 235 635 203 HOH HOH . H 5 HOH A 236 636 127 HOH HOH . H 5 HOH A 237 637 138 HOH HOH . H 5 HOH A 238 638 175 HOH HOH . H 5 HOH A 239 639 86 HOH HOH . H 5 HOH A 240 640 244 HOH HOH . H 5 HOH A 241 641 108 HOH HOH . H 5 HOH A 242 642 113 HOH HOH . H 5 HOH A 243 643 174 HOH HOH . H 5 HOH A 244 644 229 HOH HOH . H 5 HOH A 245 645 80 HOH HOH . H 5 HOH A 246 646 106 HOH HOH . H 5 HOH A 247 647 136 HOH HOH . H 5 HOH A 248 648 152 HOH HOH . H 5 HOH A 249 649 129 HOH HOH . H 5 HOH A 250 650 164 HOH HOH . H 5 HOH A 251 651 189 HOH HOH . H 5 HOH A 252 652 122 HOH HOH . H 5 HOH A 253 653 75 HOH HOH . H 5 HOH A 254 654 232 HOH HOH . H 5 HOH A 255 655 215 HOH HOH . H 5 HOH A 256 656 214 HOH HOH . H 5 HOH A 257 657 237 HOH HOH . H 5 HOH A 258 658 205 HOH HOH . H 5 HOH A 259 659 227 HOH HOH . H 5 HOH A 260 660 233 HOH HOH . H 5 HOH A 261 661 253 HOH HOH . H 5 HOH A 262 662 194 HOH HOH . H 5 HOH A 263 663 131 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 4 26.413 30.572 9.656 1 34.25 ? C1 GOL 306 A 1 HETATM 2 O O1 GOL . . . G 4 27.145 29.378 9.842 1 33.28 ? O1 GOL 306 A 1 HETATM 3 C C2 GOL . . . G 4 25.585 30.794 10.935 1 34.23 ? C2 GOL 306 A 1 HETATM 4 O O2 GOL . . . G 4 26.392 30.942 12.07 1 34.04 ? O2 GOL 306 A 1 HETATM 5 C C3 GOL . . . G 4 24.768 32.067 10.673 1 34.26 ? C3 GOL 306 A 1 HETATM 6 O O3 GOL . . . G 4 23.634 32.02 11.528 1 35.42 ? O3 GOL 306 A 1 HETATM 7 H H11 GOL . . . G 4 25.818 30.53 8.891 1 41.11 ? H11 GOL 306 A 1 HETATM 8 H H12 GOL . . . G 4 26.985 31.341 9.506 1 41.11 ? H12 GOL 306 A 1 HETATM 9 H HO1 GOL . . . G 4 27.57 29.237 9.118 1 39.94 ? HO1 GOL 306 A 1 HETATM 10 H H2 GOL . . . G 4 25.015 30.026 11.093 1 41.08 ? H2 GOL 306 A 1 HETATM 11 H HO2 GOL . . . G 4 26.011 30.558 12.717 1 40.85 ? HO2 GOL 306 A 1 HETATM 12 H H31 GOL . . . G 4 24.538 32.104 9.732 1 41.11 ? H31 GOL 306 A 1 HETATM 13 H H32 GOL . . . G 4 25.334 32.84 10.829 1 41.11 ? H32 GOL 306 A 1 HETATM 14 H HO3 GOL . . . G 4 23.883 31.663 12.258 1 42.51 ? HO3 GOL 306 A 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 14 #