data_8AKJ # _model_server_result.job_id msDB-YjXQb2_tfr1tqGkYQ _model_server_result.datetime_utc '2024-11-13 03:05:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8akj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":306}' # _entry.id 8AKJ # _exptl.entry_id 8AKJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8AKJ _cell.length_a 60.512 _cell.length_b 79.579 _cell.length_c 55.955 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AKJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 65 A CYS 69 1_555 A SG CYS 234 A CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A OG SER 66 A SER 70 1_555 F C8 CEO . A CEO 305 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.247 ? covale ? covale2 A OG SER 66 A SER 70 1_555 F C8 CEO . A CEO 305 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.336 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 166 n n C1 C2 GOL sing 167 n n C1 H11 GOL sing 168 n n C1 H12 GOL sing 169 n n O1 HO1 GOL sing 170 n n C2 O2 GOL sing 171 n n C2 C3 GOL sing 172 n n C2 H2 GOL sing 173 n n O2 HO2 GOL sing 174 n n C3 O3 GOL sing 175 n n C3 H31 GOL sing 176 n n C3 H32 GOL sing 177 n n O3 HO3 GOL sing 178 n n # _atom_sites.entry_id 8AKJ _atom_sites.fract_transf_matrix[1][1] 0.016526 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012566 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017872 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 301 1 SO4 SO4 . C 2 SO4 A 1 302 2 SO4 SO4 . D 2 SO4 A 1 303 3 SO4 SO4 . E 3 GOL A 1 304 1 GOL GOL . F 4 CEO A 1 305 1 CEO CEP . G 3 GOL A 1 306 2 GOL GOL . H 3 GOL A 1 307 4 GOL GOL . I 5 HOH A 1 401 93 HOH HOH . I 5 HOH A 2 402 162 HOH HOH . I 5 HOH A 3 403 117 HOH HOH . I 5 HOH A 4 404 238 HOH HOH . I 5 HOH A 5 405 192 HOH HOH . I 5 HOH A 6 406 108 HOH HOH . I 5 HOH A 7 407 138 HOH HOH . I 5 HOH A 8 408 169 HOH HOH . I 5 HOH A 9 409 77 HOH HOH . I 5 HOH A 10 410 7 HOH HOH . I 5 HOH A 11 411 201 HOH HOH . I 5 HOH A 12 412 112 HOH HOH . I 5 HOH A 13 413 31 HOH HOH . I 5 HOH A 14 414 78 HOH HOH . I 5 HOH A 15 415 132 HOH HOH . I 5 HOH A 16 416 50 HOH HOH . I 5 HOH A 17 417 49 HOH HOH . I 5 HOH A 18 418 210 HOH HOH . I 5 HOH A 19 419 4 HOH HOH . I 5 HOH A 20 420 148 HOH HOH . I 5 HOH A 21 421 222 HOH HOH . I 5 HOH A 22 422 118 HOH HOH . I 5 HOH A 23 423 82 HOH HOH . I 5 HOH A 24 424 25 HOH HOH . I 5 HOH A 25 425 22 HOH HOH . I 5 HOH A 26 426 143 HOH HOH . I 5 HOH A 27 427 47 HOH HOH . I 5 HOH A 28 428 1 HOH HOH . I 5 HOH A 29 429 2 HOH HOH . I 5 HOH A 30 430 204 HOH HOH . I 5 HOH A 31 431 176 HOH HOH . I 5 HOH A 32 432 103 HOH HOH . I 5 HOH A 33 433 6 HOH HOH . I 5 HOH A 34 434 182 HOH HOH . I 5 HOH A 35 435 135 HOH HOH . I 5 HOH A 36 436 194 HOH HOH . I 5 HOH A 37 437 166 HOH HOH . I 5 HOH A 38 438 19 HOH HOH . I 5 HOH A 39 439 48 HOH HOH . I 5 HOH A 40 440 12 HOH HOH . I 5 HOH A 41 441 178 HOH HOH . I 5 HOH A 42 442 56 HOH HOH . I 5 HOH A 43 443 23 HOH HOH . I 5 HOH A 44 444 136 HOH HOH . I 5 HOH A 45 445 187 HOH HOH . I 5 HOH A 46 446 28 HOH HOH . I 5 HOH A 47 447 247 HOH HOH . I 5 HOH A 48 448 196 HOH HOH . I 5 HOH A 49 449 64 HOH HOH . I 5 HOH A 50 450 33 HOH HOH . I 5 HOH A 51 451 165 HOH HOH . I 5 HOH A 52 452 211 HOH HOH . I 5 HOH A 53 453 41 HOH HOH . I 5 HOH A 54 454 9 HOH HOH . I 5 HOH A 55 455 67 HOH HOH . I 5 HOH A 56 456 75 HOH HOH . I 5 HOH A 57 457 3 HOH HOH . I 5 HOH A 58 458 26 HOH HOH . I 5 HOH A 59 459 85 HOH HOH . I 5 HOH A 60 460 101 HOH HOH . I 5 HOH A 61 461 29 HOH HOH . I 5 HOH A 62 462 16 HOH HOH . I 5 HOH A 63 463 14 HOH HOH . I 5 HOH A 64 464 10 HOH HOH . I 5 HOH A 65 465 96 HOH HOH . I 5 HOH A 66 466 37 HOH HOH . I 5 HOH A 67 467 17 HOH HOH . I 5 HOH A 68 468 13 HOH HOH . I 5 HOH A 69 469 62 HOH HOH . I 5 HOH A 70 470 54 HOH HOH . I 5 HOH A 71 471 141 HOH HOH . I 5 HOH A 72 472 92 HOH HOH . I 5 HOH A 73 473 24 HOH HOH . I 5 HOH A 74 474 89 HOH HOH . I 5 HOH A 75 475 68 HOH HOH . I 5 HOH A 76 476 216 HOH HOH . I 5 HOH A 77 477 40 HOH HOH . I 5 HOH A 78 478 15 HOH HOH . I 5 HOH A 79 479 122 HOH HOH . I 5 HOH A 80 480 34 HOH HOH . I 5 HOH A 81 481 38 HOH HOH . I 5 HOH A 82 482 66 HOH HOH . I 5 HOH A 83 483 137 HOH HOH . I 5 HOH A 84 484 44 HOH HOH . I 5 HOH A 85 485 55 HOH HOH . I 5 HOH A 86 486 51 HOH HOH . I 5 HOH A 87 487 86 HOH HOH . I 5 HOH A 88 488 46 HOH HOH . I 5 HOH A 89 489 100 HOH HOH . I 5 HOH A 90 490 98 HOH HOH . I 5 HOH A 91 491 8 HOH HOH . I 5 HOH A 92 492 52 HOH HOH . I 5 HOH A 93 493 104 HOH HOH . I 5 HOH A 94 494 81 HOH HOH . I 5 HOH A 95 495 179 HOH HOH . I 5 HOH A 96 496 235 HOH HOH . I 5 HOH A 97 497 79 HOH HOH . I 5 HOH A 98 498 218 HOH HOH . I 5 HOH A 99 499 71 HOH HOH . I 5 HOH A 100 500 131 HOH HOH . I 5 HOH A 101 501 119 HOH HOH . I 5 HOH A 102 502 18 HOH HOH . I 5 HOH A 103 503 225 HOH HOH . I 5 HOH A 104 504 195 HOH HOH . I 5 HOH A 105 505 72 HOH HOH . I 5 HOH A 106 506 156 HOH HOH . I 5 HOH A 107 507 35 HOH HOH . I 5 HOH A 108 508 69 HOH HOH . I 5 HOH A 109 509 76 HOH HOH . I 5 HOH A 110 510 114 HOH HOH . I 5 HOH A 111 511 202 HOH HOH . I 5 HOH A 112 512 80 HOH HOH . I 5 HOH A 113 513 160 HOH HOH . I 5 HOH A 114 514 42 HOH HOH . I 5 HOH A 115 515 57 HOH HOH . I 5 HOH A 116 516 61 HOH HOH . I 5 HOH A 117 517 11 HOH HOH . I 5 HOH A 118 518 159 HOH HOH . I 5 HOH A 119 519 111 HOH HOH . I 5 HOH A 120 520 161 HOH HOH . I 5 HOH A 121 521 237 HOH HOH . I 5 HOH A 122 522 53 HOH HOH . I 5 HOH A 123 523 127 HOH HOH . I 5 HOH A 124 524 39 HOH HOH . I 5 HOH A 125 525 102 HOH HOH . I 5 HOH A 126 526 105 HOH HOH . I 5 HOH A 127 527 188 HOH HOH . I 5 HOH A 128 528 130 HOH HOH . I 5 HOH A 129 529 58 HOH HOH . I 5 HOH A 130 530 74 HOH HOH . I 5 HOH A 131 531 172 HOH HOH . I 5 HOH A 132 532 124 HOH HOH . I 5 HOH A 133 533 5 HOH HOH . I 5 HOH A 134 534 63 HOH HOH . I 5 HOH A 135 535 245 HOH HOH . I 5 HOH A 136 536 236 HOH HOH . I 5 HOH A 137 537 30 HOH HOH . I 5 HOH A 138 538 144 HOH HOH . I 5 HOH A 139 539 32 HOH HOH . I 5 HOH A 140 540 107 HOH HOH . I 5 HOH A 141 541 185 HOH HOH . I 5 HOH A 142 542 59 HOH HOH . I 5 HOH A 143 543 248 HOH HOH . I 5 HOH A 144 544 60 HOH HOH . I 5 HOH A 145 545 36 HOH HOH . I 5 HOH A 146 546 150 HOH HOH . I 5 HOH A 147 547 146 HOH HOH . I 5 HOH A 148 548 87 HOH HOH . I 5 HOH A 149 549 170 HOH HOH . I 5 HOH A 150 550 168 HOH HOH . I 5 HOH A 151 551 97 HOH HOH . I 5 HOH A 152 552 209 HOH HOH . I 5 HOH A 153 553 73 HOH HOH . I 5 HOH A 154 554 155 HOH HOH . I 5 HOH A 155 555 158 HOH HOH . I 5 HOH A 156 556 153 HOH HOH . I 5 HOH A 157 557 27 HOH HOH . I 5 HOH A 158 558 70 HOH HOH . I 5 HOH A 159 559 157 HOH HOH . I 5 HOH A 160 560 106 HOH HOH . I 5 HOH A 161 561 43 HOH HOH . I 5 HOH A 162 562 45 HOH HOH . I 5 HOH A 163 563 115 HOH HOH . I 5 HOH A 164 564 125 HOH HOH . I 5 HOH A 165 565 90 HOH HOH . I 5 HOH A 166 566 213 HOH HOH . I 5 HOH A 167 567 242 HOH HOH . I 5 HOH A 168 568 224 HOH HOH . I 5 HOH A 169 569 223 HOH HOH . I 5 HOH A 170 570 186 HOH HOH . I 5 HOH A 171 571 215 HOH HOH . I 5 HOH A 172 572 174 HOH HOH . I 5 HOH A 173 573 21 HOH HOH . I 5 HOH A 174 574 116 HOH HOH . I 5 HOH A 175 575 221 HOH HOH . I 5 HOH A 176 576 140 HOH HOH . I 5 HOH A 177 577 121 HOH HOH . I 5 HOH A 178 578 220 HOH HOH . I 5 HOH A 179 579 91 HOH HOH . I 5 HOH A 180 580 145 HOH HOH . I 5 HOH A 181 581 219 HOH HOH . I 5 HOH A 182 582 142 HOH HOH . I 5 HOH A 183 583 173 HOH HOH . I 5 HOH A 184 584 189 HOH HOH . I 5 HOH A 185 585 227 HOH HOH . I 5 HOH A 186 586 217 HOH HOH . I 5 HOH A 187 587 123 HOH HOH . I 5 HOH A 188 588 229 HOH HOH . I 5 HOH A 189 589 120 HOH HOH . I 5 HOH A 190 590 203 HOH HOH . I 5 HOH A 191 591 207 HOH HOH . I 5 HOH A 192 592 234 HOH HOH . I 5 HOH A 193 593 177 HOH HOH . I 5 HOH A 194 594 206 HOH HOH . I 5 HOH A 195 595 231 HOH HOH . I 5 HOH A 196 596 230 HOH HOH . I 5 HOH A 197 597 129 HOH HOH . I 5 HOH A 198 598 113 HOH HOH . I 5 HOH A 199 599 180 HOH HOH . I 5 HOH A 200 600 110 HOH HOH . I 5 HOH A 201 601 151 HOH HOH . I 5 HOH A 202 602 139 HOH HOH . I 5 HOH A 203 603 181 HOH HOH . I 5 HOH A 204 604 243 HOH HOH . I 5 HOH A 205 605 154 HOH HOH . I 5 HOH A 206 606 241 HOH HOH . I 5 HOH A 207 607 193 HOH HOH . I 5 HOH A 208 608 183 HOH HOH . I 5 HOH A 209 609 239 HOH HOH . I 5 HOH A 210 610 133 HOH HOH . I 5 HOH A 211 611 134 HOH HOH . I 5 HOH A 212 612 240 HOH HOH . I 5 HOH A 213 613 205 HOH HOH . I 5 HOH A 214 614 197 HOH HOH . I 5 HOH A 215 615 226 HOH HOH . I 5 HOH A 216 616 208 HOH HOH . I 5 HOH A 217 617 99 HOH HOH . I 5 HOH A 218 618 190 HOH HOH . I 5 HOH A 219 619 149 HOH HOH . I 5 HOH A 220 620 88 HOH HOH . I 5 HOH A 221 621 246 HOH HOH . I 5 HOH A 222 622 65 HOH HOH . I 5 HOH A 223 623 128 HOH HOH . I 5 HOH A 224 624 184 HOH HOH . I 5 HOH A 225 625 83 HOH HOH . I 5 HOH A 226 626 199 HOH HOH . I 5 HOH A 227 627 164 HOH HOH . I 5 HOH A 228 628 152 HOH HOH . I 5 HOH A 229 629 109 HOH HOH . I 5 HOH A 230 630 198 HOH HOH . I 5 HOH A 231 631 95 HOH HOH . I 5 HOH A 232 632 94 HOH HOH . I 5 HOH A 233 633 20 HOH HOH . I 5 HOH A 234 634 232 HOH HOH . I 5 HOH A 235 635 233 HOH HOH . I 5 HOH A 236 636 147 HOH HOH . I 5 HOH A 237 637 84 HOH HOH . I 5 HOH A 238 638 191 HOH HOH . I 5 HOH A 239 639 244 HOH HOH . I 5 HOH A 240 640 163 HOH HOH . I 5 HOH A 241 641 228 HOH HOH . I 5 HOH A 242 642 175 HOH HOH . I 5 HOH A 243 643 171 HOH HOH . I 5 HOH A 244 644 167 HOH HOH . I 5 HOH A 245 645 214 HOH HOH . I 5 HOH A 246 646 126 HOH HOH . I 5 HOH A 247 647 212 HOH HOH . I 5 HOH A 248 648 200 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 3 26.383 30.456 9.622 1 32.56 ? C1 GOL 306 A 1 HETATM 2 O O1 GOL . . . G 3 27.266 29.364 9.837 1 32.59 ? O1 GOL 306 A 1 HETATM 3 C C2 GOL . . . G 3 25.657 30.717 10.956 1 32.83 ? C2 GOL 306 A 1 HETATM 4 O O2 GOL . . . G 3 26.551 30.792 12.026 1 32.09 ? O2 GOL 306 A 1 HETATM 5 C C3 GOL . . . G 3 24.859 32.041 10.77 1 32.67 ? C3 GOL 306 A 1 HETATM 6 O O3 GOL . . . G 3 23.67 31.922 11.555 1 33.89 ? O3 GOL 306 A 1 HETATM 7 H H11 GOL . . . G 3 25.728 30.275 8.93 1 39.09 ? H11 GOL 306 A 1 HETATM 8 H H12 GOL . . . G 3 26.847 31.262 9.346 1 39.09 ? H12 GOL 306 A 1 HETATM 9 H HO1 GOL . . . G 3 27.462 29.057 9.07 1 39.13 ? HO1 GOL 306 A 1 HETATM 10 H H2 GOL . . . G 3 25.05 29.984 11.146 1 39.42 ? H2 GOL 306 A 1 HETATM 11 H HO2 GOL . . . G 3 26.205 31.285 12.623 1 38.54 ? HO2 GOL 306 A 1 HETATM 12 H H31 GOL . . . G 3 24.684 32.172 9.825 1 39.23 ? H31 GOL 306 A 1 HETATM 13 H H32 GOL . . . G 3 25.421 32.786 11.033 1 39.23 ? H32 GOL 306 A 1 HETATM 14 H HO3 GOL . . . G 3 23.897 31.556 12.286 1 40.69 ? HO3 GOL 306 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #