data_8AKP # _model_server_result.job_id ptRbKw-92w_1Ra7kSP5GAg _model_server_result.datetime_utc '2025-03-04 22:24:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8akp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":300}' # _entry.id 8AKP # _exptl.entry_id 8AKP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8AKP _cell.length_a 79.22 _cell.length_b 87.3 _cell.length_c 42.53 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AKP _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN BMA C1 O1 . O6 HO6 . sing 4 ? 2 5 4 MAN MAN C1 O1 . O3 HO3 . sing 5 ? 2 6 4 MAN MAN C1 O1 . O6 HO6 . sing 6 ? 2 7 3 MAN BMA C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 290 NAG 2 n B NAG 2 B 2 NAG A 291 NAG 2 n B BMA 3 B 3 BMA A 292 BMA 2 n B MAN 4 B 4 MAN A 294 MAN 2 n B MAN 5 B 5 MAN A 296 MAN 2 n B MAN 6 B 6 MAN A 295 MAN 2 n B MAN 7 B 7 MAN A 293 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 252 A CYS 251 1_555 A SG CYS 290 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? covale ? covale1 A ND2 ASN 167 A ASN 166 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale2 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale3 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? covale ? covale4 B O6 BMA . B BMA 3 1_555 B C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale5 B O3 BMA . B BMA 3 1_555 B C1 MAN . B MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale6 B O3 MAN . B MAN 4 1_555 B C1 MAN . B MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale7 B O6 MAN . B MAN 4 1_555 B C1 MAN . B MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 412 n n C C2 TRS sing 413 n n C C3 TRS sing 414 n n C N TRS sing 415 n n C1 O1 TRS sing 416 n n C1 H11 TRS sing 417 n n C1 H12 TRS sing 418 n n C2 O2 TRS sing 419 n n C2 H21 TRS sing 420 n n C2 H22 TRS sing 421 n n C3 O3 TRS sing 422 n n C3 H31 TRS sing 423 n n C3 H32 TRS sing 424 n n N HN1 TRS sing 425 n n N HN2 TRS sing 426 n n N HN3 TRS sing 427 n n O1 HO1 TRS sing 428 n n O2 HO2 TRS sing 429 n n O3 HO3 TRS sing 430 n n # _atom_sites.entry_id 8AKP _atom_sites.fract_transf_matrix[1][1] 0.012623 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011455 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023513 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 TRS A 1 300 300 TRS TRS . D 4 HOH A 1 401 293 HOH HOH . D 4 HOH A 2 402 274 HOH HOH . D 4 HOH A 3 403 314 HOH HOH . D 4 HOH A 4 404 271 HOH HOH . D 4 HOH A 5 405 275 HOH HOH . D 4 HOH A 6 406 66 HOH HOH . D 4 HOH A 7 407 258 HOH HOH . D 4 HOH A 8 408 96 HOH HOH . D 4 HOH A 9 409 75 HOH HOH . D 4 HOH A 10 410 83 HOH HOH . D 4 HOH A 11 411 27 HOH HOH . D 4 HOH A 12 412 94 HOH HOH . D 4 HOH A 13 413 155 HOH HOH . D 4 HOH A 14 414 70 HOH HOH . D 4 HOH A 15 415 9 HOH HOH . D 4 HOH A 16 416 85 HOH HOH . D 4 HOH A 17 417 242 HOH HOH . D 4 HOH A 18 418 8 HOH HOH . D 4 HOH A 19 419 32 HOH HOH . D 4 HOH A 20 420 143 HOH HOH . D 4 HOH A 21 421 16 HOH HOH . D 4 HOH A 22 422 99 HOH HOH . D 4 HOH A 23 423 113 HOH HOH . D 4 HOH A 24 424 82 HOH HOH . D 4 HOH A 25 425 22 HOH HOH . D 4 HOH A 26 426 1 HOH HOH . D 4 HOH A 27 427 72 HOH HOH . D 4 HOH A 28 428 171 HOH HOH . D 4 HOH A 29 429 100 HOH HOH . D 4 HOH A 30 430 50 HOH HOH . D 4 HOH A 31 431 12 HOH HOH . D 4 HOH A 32 432 95 HOH HOH . D 4 HOH A 33 433 71 HOH HOH . D 4 HOH A 34 434 25 HOH HOH . D 4 HOH A 35 435 36 HOH HOH . D 4 HOH A 36 436 54 HOH HOH . D 4 HOH A 37 437 136 HOH HOH . D 4 HOH A 38 438 93 HOH HOH . D 4 HOH A 39 439 23 HOH HOH . D 4 HOH A 40 440 185 HOH HOH . D 4 HOH A 41 441 30 HOH HOH . D 4 HOH A 42 442 84 HOH HOH . D 4 HOH A 43 443 28 HOH HOH . D 4 HOH A 44 444 223 HOH HOH . D 4 HOH A 45 445 39 HOH HOH . D 4 HOH A 46 446 91 HOH HOH . D 4 HOH A 47 447 131 HOH HOH . D 4 HOH A 48 448 193 HOH HOH . D 4 HOH A 49 449 14 HOH HOH . D 4 HOH A 50 450 29 HOH HOH . D 4 HOH A 51 451 69 HOH HOH . D 4 HOH A 52 452 205 HOH HOH . D 4 HOH A 53 453 120 HOH HOH . D 4 HOH A 54 454 73 HOH HOH . D 4 HOH A 55 455 33 HOH HOH . D 4 HOH A 56 456 117 HOH HOH . D 4 HOH A 57 457 43 HOH HOH . D 4 HOH A 58 458 40 HOH HOH . D 4 HOH A 59 459 134 HOH HOH . D 4 HOH A 60 460 31 HOH HOH . D 4 HOH A 61 461 283 HOH HOH . D 4 HOH A 62 462 57 HOH HOH . D 4 HOH A 63 463 21 HOH HOH . D 4 HOH A 64 464 182 HOH HOH . D 4 HOH A 65 465 146 HOH HOH . D 4 HOH A 66 466 64 HOH HOH . D 4 HOH A 67 467 41 HOH HOH . D 4 HOH A 68 468 101 HOH HOH . D 4 HOH A 69 469 248 HOH HOH . D 4 HOH A 70 470 18 HOH HOH . D 4 HOH A 71 471 15 HOH HOH . D 4 HOH A 72 472 44 HOH HOH . D 4 HOH A 73 473 81 HOH HOH . D 4 HOH A 74 474 161 HOH HOH . D 4 HOH A 75 475 86 HOH HOH . D 4 HOH A 76 476 13 HOH HOH . D 4 HOH A 77 477 63 HOH HOH . D 4 HOH A 78 478 17 HOH HOH . D 4 HOH A 79 479 59 HOH HOH . D 4 HOH A 80 480 105 HOH HOH . D 4 HOH A 81 481 19 HOH HOH . D 4 HOH A 82 482 45 HOH HOH . D 4 HOH A 83 483 42 HOH HOH . D 4 HOH A 84 484 47 HOH HOH . D 4 HOH A 85 485 60 HOH HOH . D 4 HOH A 86 486 2 HOH HOH . D 4 HOH A 87 487 122 HOH HOH . D 4 HOH A 88 488 6 HOH HOH . D 4 HOH A 89 489 46 HOH HOH . D 4 HOH A 90 490 35 HOH HOH . D 4 HOH A 91 491 37 HOH HOH . D 4 HOH A 92 492 128 HOH HOH . D 4 HOH A 93 493 145 HOH HOH . D 4 HOH A 94 494 130 HOH HOH . D 4 HOH A 95 495 38 HOH HOH . D 4 HOH A 96 496 168 HOH HOH . D 4 HOH A 97 497 24 HOH HOH . D 4 HOH A 98 498 273 HOH HOH . D 4 HOH A 99 499 115 HOH HOH . D 4 HOH A 100 500 78 HOH HOH . D 4 HOH A 101 501 51 HOH HOH . D 4 HOH A 102 502 53 HOH HOH . D 4 HOH A 103 503 198 HOH HOH . D 4 HOH A 104 504 106 HOH HOH . D 4 HOH A 105 505 48 HOH HOH . D 4 HOH A 106 506 77 HOH HOH . D 4 HOH A 107 507 142 HOH HOH . D 4 HOH A 108 508 56 HOH HOH . D 4 HOH A 109 509 3 HOH HOH . D 4 HOH A 110 510 249 HOH HOH . D 4 HOH A 111 511 119 HOH HOH . D 4 HOH A 112 512 34 HOH HOH . D 4 HOH A 113 513 5 HOH HOH . D 4 HOH A 114 514 55 HOH HOH . D 4 HOH A 115 515 124 HOH HOH . D 4 HOH A 116 516 11 HOH HOH . D 4 HOH A 117 517 163 HOH HOH . D 4 HOH A 118 518 10 HOH HOH . D 4 HOH A 119 519 7 HOH HOH . D 4 HOH A 120 520 4 HOH HOH . D 4 HOH A 121 521 323 HOH HOH . D 4 HOH A 122 522 74 HOH HOH . D 4 HOH A 123 523 88 HOH HOH . D 4 HOH A 124 524 158 HOH HOH . D 4 HOH A 125 525 111 HOH HOH . D 4 HOH A 126 526 49 HOH HOH . D 4 HOH A 127 527 175 HOH HOH . D 4 HOH A 128 528 20 HOH HOH . D 4 HOH A 129 529 184 HOH HOH . D 4 HOH A 130 530 162 HOH HOH . D 4 HOH A 131 531 26 HOH HOH . D 4 HOH A 132 532 165 HOH HOH . D 4 HOH A 133 533 188 HOH HOH . D 4 HOH A 134 534 90 HOH HOH . D 4 HOH A 135 535 110 HOH HOH . D 4 HOH A 136 536 180 HOH HOH . D 4 HOH A 137 537 58 HOH HOH . D 4 HOH A 138 538 104 HOH HOH . D 4 HOH A 139 539 279 HOH HOH . D 4 HOH A 140 540 224 HOH HOH . D 4 HOH A 141 541 240 HOH HOH . D 4 HOH A 142 542 87 HOH HOH . D 4 HOH A 143 543 52 HOH HOH . D 4 HOH A 144 544 317 HOH HOH . D 4 HOH A 145 545 150 HOH HOH . D 4 HOH A 146 546 260 HOH HOH . D 4 HOH A 147 547 102 HOH HOH . D 4 HOH A 148 548 246 HOH HOH . D 4 HOH A 149 549 262 HOH HOH . D 4 HOH A 150 550 295 HOH HOH . D 4 HOH A 151 551 164 HOH HOH . D 4 HOH A 152 552 154 HOH HOH . D 4 HOH A 153 553 277 HOH HOH . D 4 HOH A 154 554 125 HOH HOH . D 4 HOH A 155 555 282 HOH HOH . D 4 HOH A 156 556 97 HOH HOH . D 4 HOH A 157 557 89 HOH HOH . D 4 HOH A 158 558 144 HOH HOH . D 4 HOH A 159 559 114 HOH HOH . D 4 HOH A 160 561 239 HOH HOH . D 4 HOH A 161 562 62 HOH HOH . D 4 HOH A 162 563 172 HOH HOH . D 4 HOH A 163 564 190 HOH HOH . D 4 HOH A 164 565 157 HOH HOH . D 4 HOH A 165 566 265 HOH HOH . D 4 HOH A 166 567 220 HOH HOH . D 4 HOH A 167 568 65 HOH HOH . D 4 HOH A 168 569 103 HOH HOH . D 4 HOH A 169 570 156 HOH HOH . D 4 HOH A 170 571 235 HOH HOH . D 4 HOH A 171 572 309 HOH HOH . D 4 HOH A 172 573 292 HOH HOH . D 4 HOH A 173 574 266 HOH HOH . D 4 HOH A 174 575 267 HOH HOH . D 4 HOH A 175 576 76 HOH HOH . D 4 HOH A 176 577 138 HOH HOH . D 4 HOH A 177 578 67 HOH HOH . D 4 HOH A 178 579 255 HOH HOH . D 4 HOH A 179 580 194 HOH HOH . D 4 HOH A 180 581 285 HOH HOH . D 4 HOH A 181 582 208 HOH HOH . D 4 HOH A 182 583 209 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . C 3 10.366 25.309 -7.663 1 64.62 ? C TRS 300 A 1 HETATM 2 C C1 TRS . . . C 3 11.618 24.557 -8.097 1 76.8 ? C1 TRS 300 A 1 HETATM 3 C C2 TRS . . . C 3 9.663 24.541 -6.559 1 63.19 ? C2 TRS 300 A 1 HETATM 4 C C3 TRS . . . C 3 10.716 26.718 -7.192 1 58.31 ? C3 TRS 300 A 1 HETATM 5 N N TRS . . . C 3 9.449 25.369 -8.804 1 64.29 ? N TRS 300 A 1 HETATM 6 O O1 TRS . . . C 3 12.089 23.777 -7.022 1 82.67 ? O1 TRS 300 A 1 HETATM 7 O O2 TRS . . . C 3 8.891 23.526 -7.164 1 65.6 ? O2 TRS 300 A 1 HETATM 8 O O3 TRS . . . C 3 12.079 26.786 -6.824 1 55.94 ? O3 TRS 300 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #