data_8AKR
#
_model_server_result.job_id            rQzl1V7Kb7FQ1ZCBjMjGjw 
_model_server_result.datetime_utc      '2024-10-10 23:33:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8akr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"CD","auth_seq_id":301}' 
#
_entry.id    8AKR 
#
_exptl.entry_id    8AKR 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    60 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    60-meric 
_pdbx_struct_assembly.oligomeric_count      60 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC,VC,WC,XC,YC,ZC,AD,BD,CD,DD,ED,FD,GD,HD,ID,JD,KD,LD,MD,ND,OD,PD 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 IB N N 
? 2 JB N N 
? 2 KB N N 
? 2 LB N N 
? 2 MB N N 
? 2 NB N N 
? 2 OB N N 
? 2 PB N N 
? 2 QB N N 
? 2 RB N N 
? 2 SB N N 
? 2 TB N N 
? 2 UB N N 
? 2 VB N N 
? 2 WB N N 
? 2 XB N N 
? 2 YB N N 
? 2 ZB N N 
? 2 AC N N 
? 2 BC N N 
? 2 CC N N 
? 2 DC N N 
? 2 EC N N 
? 2 FC N N 
? 2 GC N N 
? 2 HC N N 
? 2 IC N N 
? 2 JC N N 
? 2 KC N N 
? 2 LC N N 
? 2 MC N N 
? 2 NC N N 
? 2 OC N N 
? 2 PC N N 
? 2 QC N N 
? 2 RC N N 
? 2 SC N N 
? 2 TC N N 
? 2 UC N N 
? 2 VC N N 
? 2 WC N N 
? 2 XC N N 
? 2 YC N N 
? 2 ZC N N 
? 2 AD N N 
? 2 BD N N 
? 2 CD N N 
? 2 DD N N 
? 2 ED N N 
? 2 FD N N 
? 2 GD N N 
? 2 HD N N 
? 2 ID N N 
? 2 JD N N 
? 2 KD N N 
? 2 LD N N 
? 2 MD N N 
? 2 ND N N 
? 2 OD N N 
? 2 PD N N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     8AKR 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
IB 2 ADP H 1 301 301 ADP ADP . 
JB 2 ADP A 1 301 301 ADP ADP . 
KB 2 ADP B 1 301 301 ADP ADP . 
LB 2 ADP C 1 301 301 ADP ADP . 
MB 2 ADP D 1 301 301 ADP ADP . 
NB 2 ADP E 1 301 301 ADP ADP . 
OB 2 ADP F 1 301 301 ADP ADP . 
PB 2 ADP G 1 301 301 ADP ADP . 
QB 2 ADP I 1 301 301 ADP ADP . 
RB 2 ADP J 1 301 301 ADP ADP . 
SB 2 ADP K 1 301 301 ADP ADP . 
TB 2 ADP L 1 301 301 ADP ADP . 
UB 2 ADP M 1 301 301 ADP ADP . 
VB 2 ADP N 1 301 301 ADP ADP . 
WB 2 ADP O 1 301 301 ADP ADP . 
XB 2 ADP P 1 301 301 ADP ADP . 
YB 2 ADP P 1 302 301 ADP ADP . 
ZB 2 ADP Q 1 301 301 ADP ADP . 
AC 2 ADP R 1 301 301 ADP ADP . 
BC 2 ADP S 1 301 301 ADP ADP . 
CC 2 ADP T 1 301 301 ADP ADP . 
DC 2 ADP U 1 301 301 ADP ADP . 
EC 2 ADP V 1 301 301 ADP ADP . 
FC 2 ADP W 1 301 301 ADP ADP . 
GC 2 ADP X 1 301 301 ADP ADP . 
HC 2 ADP Y 1 301 301 ADP ADP . 
IC 2 ADP Z 1 301 301 ADP ADP . 
JC 2 ADP a 1 301 301 ADP ADP . 
KC 2 ADP b 1 301 301 ADP ADP . 
LC 2 ADP c 1 301 301 ADP ADP . 
MC 2 ADP d 1 301 301 ADP ADP . 
NC 2 ADP e 1 301 301 ADP ADP . 
OC 2 ADP f 1 301 301 ADP ADP . 
PC 2 ADP g 1 301 301 ADP ADP . 
QC 2 ADP h 1 301 301 ADP ADP . 
RC 2 ADP i 1 301 301 ADP ADP . 
SC 2 ADP j 1 301 301 ADP ADP . 
TC 2 ADP k 1 301 301 ADP ADP . 
UC 2 ADP l 1 301 301 ADP ADP . 
VC 2 ADP m 1 301 301 ADP ADP . 
WC 2 ADP n 1 301 301 ADP ADP . 
XC 2 ADP o 1 301 301 ADP ADP . 
YC 2 ADP p 1 301 301 ADP ADP . 
ZC 2 ADP q 1 301 301 ADP ADP . 
AD 2 ADP r 1 301 301 ADP ADP . 
BD 2 ADP s 1 301 301 ADP ADP . 
CD 2 ADP t 1 301 301 ADP ADP . 
DD 2 ADP u 1 301 301 ADP ADP . 
ED 2 ADP v 1 301 301 ADP ADP . 
FD 2 ADP w 1 301 301 ADP ADP . 
GD 2 ADP y 1 301 301 ADP ADP . 
HD 2 ADP z 1 301 301 ADP ADP . 
ID 2 ADP 0 1 301 301 ADP ADP . 
JD 2 ADP 1 1 301 301 ADP ADP . 
KD 2 ADP 2 1 301 301 ADP ADP . 
LD 2 ADP 3 1 301 301 ADP ADP . 
MD 2 ADP 4 1 301 301 ADP ADP . 
ND 2 ADP 5 1 301 301 ADP ADP . 
OD 2 ADP 6 1 301 301 ADP ADP . 
PD 2 ADP 7 1 301 301 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . CD 2 272.23 212.151 245.049 1 112.4 ? PB ADP 301 t 1 
HETATM 2 O O1B ADP . . . CD 2 271.61 211.509 243.831 1 112.4 ? O1B ADP 301 t 1 
HETATM 3 O O2B ADP . . . CD 2 273.674 212.552 244.875 1 112.4 ? O2B ADP 301 t 1 
HETATM 4 O O3B ADP . . . CD 2 271.364 213.201 245.7 1 112.4 ? O3B ADP 301 t 1 
HETATM 5 P PA ADP . . . CD 2 273.226 209.684 245.871 1 112.4 ? PA ADP 301 t 1 
HETATM 6 O O1A ADP . . . CD 2 272.928 209.197 244.477 1 112.4 ? O1A ADP 301 t 1 
HETATM 7 O O2A ADP . . . CD 2 274.651 210.035 246.226 1 112.4 ? O2A ADP 301 t 1 
HETATM 8 O O3A ADP . . . CD 2 272.29 210.965 246.136 1 112.4 ? O3A ADP 301 t 1 
HETATM 9 O O5' ADP . . . CD 2 272.682 208.586 246.918 1 112.4 ? O5' ADP 301 t 1 
HETATM 10 C C5' ADP . . . CD 2 272.386 207.256 246.492 1 112.4 ? C5' ADP 301 t 1 
HETATM 11 C C4' ADP . . . CD 2 273.171 206.254 247.327 1 112.4 ? C4' ADP 301 t 1 
HETATM 12 O O4' ADP . . . CD 2 272.313 205.294 247.943 1 112.4 ? O4' ADP 301 t 1 
HETATM 13 C C3' ADP . . . CD 2 274.171 205.472 246.488 1 112.4 ? C3' ADP 301 t 1 
HETATM 14 O O3' ADP . . . CD 2 275.498 205.921 246.773 1 112.4 ? O3' ADP 301 t 1 
HETATM 15 C C2' ADP . . . CD 2 274.017 204.025 246.912 1 112.4 ? C2' ADP 301 t 1 
HETATM 16 O O2' ADP . . . CD 2 275.271 203.511 247.367 1 112.4 ? O2' ADP 301 t 1 
HETATM 17 C C1' ADP . . . CD 2 273.031 204.064 248.067 1 112.4 ? C1' ADP 301 t 1 
HETATM 18 N N9 ADP . . . CD 2 272.113 202.898 248.058 1 112.4 ? N9 ADP 301 t 1 
HETATM 19 C C8 ADP . . . CD 2 270.831 202.893 247.652 1 112.4 ? C8 ADP 301 t 1 
HETATM 20 N N7 ADP . . . CD 2 270.282 201.658 247.79 1 112.4 ? N7 ADP 301 t 1 
HETATM 21 C C5 ADP . . . CD 2 271.228 200.849 248.301 1 112.4 ? C5 ADP 301 t 1 
HETATM 22 C C6 ADP . . . CD 2 271.32 199.423 248.694 1 112.4 ? C6 ADP 301 t 1 
HETATM 23 N N6 ADP . . . CD 2 270.261 198.589 248.565 1 112.4 ? N6 ADP 301 t 1 
HETATM 24 N N1 ADP . . . CD 2 272.498 198.981 249.186 1 112.4 ? N1 ADP 301 t 1 
HETATM 25 C C2 ADP . . . CD 2 273.559 199.797 249.317 1 112.4 ? C2 ADP 301 t 1 
HETATM 26 N N3 ADP . . . CD 2 273.547 201.099 248.984 1 112.4 ? N3 ADP 301 t 1 
HETATM 27 C C4 ADP . . . CD 2 272.43 201.673 248.479 1 112.4 ? C4 ADP 301 t 1 
#
_model_server_stats.io_time_ms              57 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    84 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#