data_8ALH # _model_server_result.job_id WOVAnQRobyBOdgX8ttP2cQ _model_server_result.datetime_utc '2024-10-10 08:22:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8alh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":206}' # _entry.id 8ALH # _exptl.entry_id 8ALH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ALH _cell.length_a 56.861 _cell.length_b 56.861 _cell.length_c 134.612 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ALH _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 73 B ASP 73 1_555 C CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc2 A OD1 ASN 75 B ASN 75 1_555 C CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc3 A OD1 ASP 77 B ASP 77 1_555 C CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc4 A O ARG 79 B ARG 79 1_555 C CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc5 A OE1 GLU 84 B GLU 84 1_555 C CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc6 A OE2 GLU 84 B GLU 84 1_555 C CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc7 A OD1 ASP 109 B ASP 109 1_555 D CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc8 A OD1 ASP 111 B ASP 111 1_555 D CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc9 A OD2 ASP 111 B ASP 111 1_555 F MG MG . B MG 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc10 A OD2 ASP 111 B ASP 111 1_555 F MG MG . B MG 204 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc11 A OD1 ASP 113 B ASP 113 1_555 D CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc12 A O TYR 115 B TYR 115 1_555 D CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc13 A OE1 GLU 120 B GLU 120 1_555 D CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc14 A OE2 GLU 120 B GLU 120 1_555 D CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc15 A OD1 ASP 157 B ASP 157 1_555 E NA NA . B NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc16 A OD1 ASN 159 B ASN 159 1_555 E NA NA . B NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc17 A OD1 ASP 161 B ASP 161 1_555 E NA NA . B NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc18 A O LYS 163 B LYS 163 1_555 E NA NA . B NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc19 A OE1 GLU 168 B GLU 168 1_555 E NA NA . B NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc20 A OE2 GLU 168 B GLU 168 1_555 E NA NA . B NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc21 C CA CA . B CA 201 1_555 L O HOH . B HOH 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc22 D CA CA . B CA 202 1_555 L O HOH . B HOH 372 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc23 E NA NA . B NA 203 1_555 L O HOH . B HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc24 F MG MG . B MG 204 1_555 L O HOH . B HOH 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc25 F MG MG . B MG 204 1_555 L O HOH . B HOH 310 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc26 F MG MG . B MG 204 1_555 L O HOH . B HOH 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc27 F MG MG . B MG 204 1_555 L O HOH . B HOH 359 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc28 F MG MG . B MG 204 1_555 L O HOH . B HOH 386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc29 F MG MG . B MG 204 1_555 L O HOH . B HOH 386 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 166 n n C1 C2 GOL sing 167 n n C1 H11 GOL sing 168 n n C1 H12 GOL sing 169 n n O1 HO1 GOL sing 170 n n C2 O2 GOL sing 171 n n C2 C3 GOL sing 172 n n C2 H2 GOL sing 173 n n O2 HO2 GOL sing 174 n n C3 O3 GOL sing 175 n n C3 H31 GOL sing 176 n n C3 H32 GOL sing 177 n n O3 HO3 GOL sing 178 n n # _atom_sites.entry_id 8ALH _atom_sites.fract_transf_matrix[1][1] 0.017587 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017587 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007429 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA B 1 201 1 CA CA . D 3 CA B 1 202 2 CA CA . E 4 NA B 1 203 1 NA NA . F 5 MG B 1 204 1 MG MG . G 6 1PE B 1 205 2 1PE 1PE . H 7 GOL B 1 206 1 GOL GOL . I 8 CL P 1 501 1 CL CL . J 6 1PE P 1 502 1 1PE 1PE . K 6 1PE P 1 503 3 1PE 1PE . L 9 HOH B 1 301 87 HOH HOH . L 9 HOH B 2 302 192 HOH HOH . L 9 HOH B 3 303 147 HOH HOH . L 9 HOH B 4 304 113 HOH HOH . L 9 HOH B 5 305 30 HOH HOH . L 9 HOH B 6 306 14 HOH HOH . L 9 HOH B 7 307 32 HOH HOH . L 9 HOH B 8 308 24 HOH HOH . L 9 HOH B 9 309 7 HOH HOH . L 9 HOH B 10 310 5 HOH HOH . L 9 HOH B 11 311 78 HOH HOH . L 9 HOH B 12 312 179 HOH HOH . L 9 HOH B 13 313 34 HOH HOH . L 9 HOH B 14 314 61 HOH HOH . L 9 HOH B 15 315 183 HOH HOH . L 9 HOH B 16 316 13 HOH HOH . L 9 HOH B 17 317 99 HOH HOH . L 9 HOH B 18 318 22 HOH HOH . L 9 HOH B 19 319 127 HOH HOH . L 9 HOH B 20 320 48 HOH HOH . L 9 HOH B 21 321 15 HOH HOH . L 9 HOH B 22 322 177 HOH HOH . L 9 HOH B 23 323 114 HOH HOH . L 9 HOH B 24 324 163 HOH HOH . L 9 HOH B 25 325 41 HOH HOH . L 9 HOH B 26 326 36 HOH HOH . L 9 HOH B 27 327 10 HOH HOH . L 9 HOH B 28 328 39 HOH HOH . L 9 HOH B 29 329 134 HOH HOH . L 9 HOH B 30 330 46 HOH HOH . L 9 HOH B 31 331 20 HOH HOH . L 9 HOH B 32 332 12 HOH HOH . L 9 HOH B 33 333 43 HOH HOH . L 9 HOH B 34 334 58 HOH HOH . L 9 HOH B 35 335 1 HOH HOH . L 9 HOH B 36 336 86 HOH HOH . L 9 HOH B 37 337 18 HOH HOH . L 9 HOH B 38 338 144 HOH HOH . L 9 HOH B 39 339 188 HOH HOH . L 9 HOH B 40 340 157 HOH HOH . L 9 HOH B 41 341 167 HOH HOH . L 9 HOH B 42 342 174 HOH HOH . L 9 HOH B 43 343 109 HOH HOH . L 9 HOH B 44 344 198 HOH HOH . L 9 HOH B 45 345 206 HOH HOH . L 9 HOH B 46 346 16 HOH HOH . L 9 HOH B 47 347 154 HOH HOH . L 9 HOH B 48 348 19 HOH HOH . L 9 HOH B 49 349 129 HOH HOH . L 9 HOH B 50 350 8 HOH HOH . L 9 HOH B 51 351 23 HOH HOH . L 9 HOH B 52 352 193 HOH HOH . L 9 HOH B 53 353 52 HOH HOH . L 9 HOH B 54 354 77 HOH HOH . L 9 HOH B 55 355 171 HOH HOH . L 9 HOH B 56 356 142 HOH HOH . L 9 HOH B 57 357 4 HOH HOH . L 9 HOH B 58 358 11 HOH HOH . L 9 HOH B 59 359 84 HOH HOH . L 9 HOH B 60 360 182 HOH HOH . L 9 HOH B 61 361 91 HOH HOH . L 9 HOH B 62 362 27 HOH HOH . L 9 HOH B 63 363 200 HOH HOH . L 9 HOH B 64 364 17 HOH HOH . L 9 HOH B 65 365 28 HOH HOH . L 9 HOH B 66 366 201 HOH HOH . L 9 HOH B 67 367 64 HOH HOH . L 9 HOH B 68 368 6 HOH HOH . L 9 HOH B 69 369 196 HOH HOH . L 9 HOH B 70 370 42 HOH HOH . L 9 HOH B 71 371 50 HOH HOH . L 9 HOH B 72 372 3 HOH HOH . L 9 HOH B 73 373 90 HOH HOH . L 9 HOH B 74 374 26 HOH HOH . L 9 HOH B 75 375 205 HOH HOH . L 9 HOH B 76 376 202 HOH HOH . L 9 HOH B 77 377 156 HOH HOH . L 9 HOH B 78 378 117 HOH HOH . L 9 HOH B 79 379 146 HOH HOH . L 9 HOH B 80 380 38 HOH HOH . L 9 HOH B 81 381 31 HOH HOH . L 9 HOH B 82 382 149 HOH HOH . L 9 HOH B 83 383 65 HOH HOH . L 9 HOH B 84 384 140 HOH HOH . L 9 HOH B 85 385 89 HOH HOH . L 9 HOH B 86 386 151 HOH HOH . L 9 HOH B 87 387 130 HOH HOH . L 9 HOH B 88 388 70 HOH HOH . L 9 HOH B 89 389 180 HOH HOH . L 9 HOH B 90 390 119 HOH HOH . L 9 HOH B 91 391 135 HOH HOH . L 9 HOH B 92 392 158 HOH HOH . L 9 HOH B 93 393 136 HOH HOH . L 9 HOH B 94 394 81 HOH HOH . L 9 HOH B 95 395 155 HOH HOH . L 9 HOH B 96 396 37 HOH HOH . L 9 HOH B 97 397 145 HOH HOH . L 9 HOH B 98 398 189 HOH HOH . L 9 HOH B 99 399 63 HOH HOH . L 9 HOH B 100 400 173 HOH HOH . L 9 HOH B 101 401 195 HOH HOH . L 9 HOH B 102 402 131 HOH HOH . L 9 HOH B 103 403 164 HOH HOH . L 9 HOH B 104 404 71 HOH HOH . L 9 HOH B 105 405 160 HOH HOH . L 9 HOH B 106 406 191 HOH HOH . L 9 HOH B 107 407 108 HOH HOH . L 9 HOH B 108 408 141 HOH HOH . L 9 HOH B 109 409 181 HOH HOH . L 9 HOH B 110 410 190 HOH HOH . L 9 HOH B 111 411 88 HOH HOH . L 9 HOH B 112 412 186 HOH HOH . L 9 HOH B 113 413 85 HOH HOH . L 9 HOH B 114 414 107 HOH HOH . L 9 HOH B 115 415 125 HOH HOH . L 9 HOH B 116 416 172 HOH HOH . L 9 HOH B 117 417 204 HOH HOH . L 9 HOH B 118 418 139 HOH HOH . L 9 HOH B 119 419 80 HOH HOH . L 9 HOH B 120 420 159 HOH HOH . L 9 HOH B 121 421 170 HOH HOH . L 9 HOH B 122 422 162 HOH HOH . L 9 HOH B 123 423 137 HOH HOH . L 9 HOH B 124 424 111 HOH HOH . L 9 HOH B 125 425 176 HOH HOH . L 9 HOH B 126 426 69 HOH HOH . L 9 HOH B 127 427 197 HOH HOH . M 9 HOH P 1 601 62 HOH HOH . M 9 HOH P 2 602 33 HOH HOH . M 9 HOH P 3 603 40 HOH HOH . M 9 HOH P 4 604 21 HOH HOH . M 9 HOH P 5 605 96 HOH HOH . M 9 HOH P 6 606 152 HOH HOH . M 9 HOH P 7 607 25 HOH HOH . M 9 HOH P 8 608 54 HOH HOH . M 9 HOH P 9 609 105 HOH HOH . M 9 HOH P 10 610 168 HOH HOH . M 9 HOH P 11 611 187 HOH HOH . M 9 HOH P 12 612 203 HOH HOH . M 9 HOH P 13 613 148 HOH HOH . M 9 HOH P 14 614 199 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 7 1.347 23.032 13.964 1 55.49 ? C1 GOL 206 B 1 HETATM 2 O O1 GOL . . . H 7 1.277 21.654 13.58 1 37.06 ? O1 GOL 206 B 1 HETATM 3 C C2 GOL . . . H 7 0.029 23.66 13.409 1 54.69 ? C2 GOL 206 B 1 HETATM 4 O O2 GOL . . . H 7 -0.185 24.988 13.774 1 50.49 ? O2 GOL 206 B 1 HETATM 5 C C3 GOL . . . H 7 0.191 23.376 11.75 1 77.41 ? C3 GOL 206 B 1 HETATM 6 O O3 GOL . . . H 7 -1.072 23.363 11.295 1 67.01 ? O3 GOL 206 B 1 HETATM 7 H H11 GOL . . . H 7 2.116 23.493 13.595 1 66.59 ? H11 GOL 206 B 1 HETATM 8 H H12 GOL . . . H 7 1.397 23.159 14.924 1 66.59 ? H12 GOL 206 B 1 HETATM 9 H HO1 GOL . . . H 7 1.971 21.482 13.113 1 44.47 ? HO1 GOL 206 B 1 HETATM 10 H H2 GOL . . . H 7 -0.764 23.24 13.778 1 65.62 ? H2 GOL 206 B 1 HETATM 11 H HO2 GOL . . . H 7 -0.857 25.243 13.277 1 60.58 ? HO2 GOL 206 B 1 HETATM 12 H H31 GOL . . . H 7 0.671 22.545 11.605 1 92.89 ? H31 GOL 206 B 1 HETATM 13 H H32 GOL . . . H 7 0.746 24.065 11.352 1 92.89 ? H32 GOL 206 B 1 HETATM 14 H HO3 GOL . . . H 7 -1.134 24.003 10.757 1 80.41 ? HO3 GOL 206 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #