data_8ALM # _model_server_result.job_id GfdAOZBgjJL6trEmZymxQQ _model_server_result.datetime_utc '2024-10-10 06:29:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8alm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":205}' # _entry.id 8ALM # _exptl.entry_id 8ALM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ALM _cell.length_a 56.639 _cell.length_b 56.639 _cell.length_c 134.532 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ALM _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 73 B ASP 73 1_555 C CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc2 A OD1 ASN 75 B ASN 75 1_555 C CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc3 A OD1 ASP 77 B ASP 77 1_555 C CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc4 A O ARG 79 B ARG 79 1_555 C CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc5 A OE1 GLU 84 B GLU 84 1_555 C CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc6 A OE2 GLU 84 B GLU 84 1_555 C CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc7 A OD1 ASP 109 B ASP 109 1_555 D CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc8 A OD1 ASP 111 B ASP 111 1_555 D CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc9 A OD1 ASP 113 B ASP 113 1_555 D CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc10 A O TYR 115 B TYR 115 1_555 D CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc11 A OE1 GLU 120 B GLU 120 1_555 D CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc12 A OE2 GLU 120 B GLU 120 1_555 D CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc13 A OD1 ASP 157 B ASP 157 1_555 E NA NA . B NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc14 A OD1 ASN 159 B ASN 159 1_555 E NA NA . B NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc15 A OD1 ASP 161 B ASP 161 1_555 E NA NA . B NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc16 A O LYS 163 B LYS 163 1_555 E NA NA . B NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc17 A OE1 GLU 168 B GLU 168 1_555 E NA NA . B NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc18 A OE2 GLU 168 B GLU 168 1_555 E NA NA . B NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc19 C CA CA . B CA 201 1_555 J O HOH . B HOH 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc20 D CA CA . B CA 202 1_555 J O HOH . B HOH 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc21 E NA NA . B NA 203 1_555 J O HOH . B HOH 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 166 n n C1 C2 GOL sing 167 n n C1 H11 GOL sing 168 n n C1 H12 GOL sing 169 n n O1 HO1 GOL sing 170 n n C2 O2 GOL sing 171 n n C2 C3 GOL sing 172 n n C2 H2 GOL sing 173 n n O2 HO2 GOL sing 174 n n C3 O3 GOL sing 175 n n C3 H31 GOL sing 176 n n C3 H32 GOL sing 177 n n O3 HO3 GOL sing 178 n n # _atom_sites.entry_id 8ALM _atom_sites.fract_transf_matrix[1][1] 0.017656 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017656 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007433 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA B 1 201 1 CA CA . D 3 CA B 1 202 2 CA CA . E 4 NA B 1 203 1 NA NA . F 5 1PE B 1 204 2 1PE 1PE . G 6 GOL B 1 205 1 GOL GOL . H 7 CL P 1 501 1 CL CL . I 5 1PE P 1 502 1 1PE 1PE . J 8 HOH B 1 301 62 HOH HOH . J 8 HOH B 2 302 46 HOH HOH . J 8 HOH B 3 303 36 HOH HOH . J 8 HOH B 4 304 24 HOH HOH . J 8 HOH B 5 305 113 HOH HOH . J 8 HOH B 6 306 193 HOH HOH . J 8 HOH B 7 307 138 HOH HOH . J 8 HOH B 8 308 179 HOH HOH . J 8 HOH B 9 309 32 HOH HOH . J 8 HOH B 10 310 87 HOH HOH . J 8 HOH B 11 311 68 HOH HOH . J 8 HOH B 12 312 22 HOH HOH . J 8 HOH B 13 313 61 HOH HOH . J 8 HOH B 14 314 7 HOH HOH . J 8 HOH B 15 315 5 HOH HOH . J 8 HOH B 16 316 20 HOH HOH . J 8 HOH B 17 317 54 HOH HOH . J 8 HOH B 18 318 177 HOH HOH . J 8 HOH B 19 319 30 HOH HOH . J 8 HOH B 20 320 15 HOH HOH . J 8 HOH B 21 321 109 HOH HOH . J 8 HOH B 22 322 14 HOH HOH . J 8 HOH B 23 323 48 HOH HOH . J 8 HOH B 24 324 91 HOH HOH . J 8 HOH B 25 325 13 HOH HOH . J 8 HOH B 26 326 6 HOH HOH . J 8 HOH B 27 327 1 HOH HOH . J 8 HOH B 28 328 78 HOH HOH . J 8 HOH B 29 329 134 HOH HOH . J 8 HOH B 30 330 11 HOH HOH . J 8 HOH B 31 331 117 HOH HOH . J 8 HOH B 32 332 127 HOH HOH . J 8 HOH B 33 333 12 HOH HOH . J 8 HOH B 34 334 118 HOH HOH . J 8 HOH B 35 335 86 HOH HOH . J 8 HOH B 36 336 196 HOH HOH . J 8 HOH B 37 337 18 HOH HOH . J 8 HOH B 38 338 126 HOH HOH . J 8 HOH B 39 339 90 HOH HOH . J 8 HOH B 40 340 19 HOH HOH . J 8 HOH B 41 341 129 HOH HOH . J 8 HOH B 42 342 8 HOH HOH . J 8 HOH B 43 343 16 HOH HOH . J 8 HOH B 44 344 17 HOH HOH . J 8 HOH B 45 345 171 HOH HOH . J 8 HOH B 46 346 10 HOH HOH . J 8 HOH B 47 347 191 HOH HOH . J 8 HOH B 48 348 189 HOH HOH . J 8 HOH B 49 349 39 HOH HOH . J 8 HOH B 50 350 42 HOH HOH . J 8 HOH B 51 351 23 HOH HOH . J 8 HOH B 52 352 27 HOH HOH . J 8 HOH B 53 353 43 HOH HOH . J 8 HOH B 54 354 167 HOH HOH . J 8 HOH B 55 355 41 HOH HOH . J 8 HOH B 56 356 58 HOH HOH . J 8 HOH B 57 357 45 HOH HOH . J 8 HOH B 58 358 64 HOH HOH . J 8 HOH B 59 359 174 HOH HOH . J 8 HOH B 60 360 81 HOH HOH . J 8 HOH B 61 361 28 HOH HOH . J 8 HOH B 62 362 26 HOH HOH . J 8 HOH B 63 363 89 HOH HOH . J 8 HOH B 64 364 4 HOH HOH . J 8 HOH B 65 365 182 HOH HOH . J 8 HOH B 66 366 3 HOH HOH . J 8 HOH B 67 367 192 HOH HOH . J 8 HOH B 68 368 194 HOH HOH . J 8 HOH B 69 369 188 HOH HOH . J 8 HOH B 70 370 144 HOH HOH . J 8 HOH B 71 371 142 HOH HOH . J 8 HOH B 72 372 165 HOH HOH . J 8 HOH B 73 373 202 HOH HOH . J 8 HOH B 74 374 198 HOH HOH . J 8 HOH B 75 375 146 HOH HOH . J 8 HOH B 76 376 38 HOH HOH . J 8 HOH B 77 377 119 HOH HOH . J 8 HOH B 78 378 77 HOH HOH . J 8 HOH B 79 379 70 HOH HOH . J 8 HOH B 80 380 141 HOH HOH . J 8 HOH B 81 381 175 HOH HOH . J 8 HOH B 82 382 130 HOH HOH . J 8 HOH B 83 383 169 HOH HOH . J 8 HOH B 84 384 180 HOH HOH . J 8 HOH B 85 385 131 HOH HOH . J 8 HOH B 86 386 50 HOH HOH . J 8 HOH B 87 387 203 HOH HOH . J 8 HOH B 88 388 158 HOH HOH . J 8 HOH B 89 389 156 HOH HOH . J 8 HOH B 90 390 37 HOH HOH . J 8 HOH B 91 391 71 HOH HOH . J 8 HOH B 92 392 195 HOH HOH . J 8 HOH B 93 393 187 HOH HOH . J 8 HOH B 94 394 164 HOH HOH . J 8 HOH B 95 395 63 HOH HOH . J 8 HOH B 96 396 160 HOH HOH . J 8 HOH B 97 397 82 HOH HOH . J 8 HOH B 98 398 178 HOH HOH . J 8 HOH B 99 399 181 HOH HOH . J 8 HOH B 100 400 88 HOH HOH . J 8 HOH B 101 401 137 HOH HOH . J 8 HOH B 102 402 162 HOH HOH . J 8 HOH B 103 403 111 HOH HOH . J 8 HOH B 104 404 125 HOH HOH . J 8 HOH B 105 405 186 HOH HOH . J 8 HOH B 106 406 172 HOH HOH . J 8 HOH B 107 407 201 HOH HOH . J 8 HOH B 108 408 69 HOH HOH . K 8 HOH P 1 601 33 HOH HOH . K 8 HOH P 2 602 40 HOH HOH . K 8 HOH P 3 603 21 HOH HOH . K 8 HOH P 4 604 152 HOH HOH . K 8 HOH P 5 605 25 HOH HOH . K 8 HOH P 6 606 105 HOH HOH . K 8 HOH P 7 607 168 HOH HOH . K 8 HOH P 8 608 148 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 6 1.129 22.83 14.164 1 52 ? C1 GOL 205 B 1 HETATM 2 O O1 GOL . . . G 6 1.219 21.498 13.659 1 41.94 ? O1 GOL 205 B 1 HETATM 3 C C2 GOL . . . G 6 -0.066 23.578 13.416 1 57.82 ? C2 GOL 205 B 1 HETATM 4 O O2 GOL . . . G 6 0.003 24.989 13.612 1 64.08 ? O2 GOL 205 B 1 HETATM 5 C C3 GOL . . . G 6 0.087 23.188 11.918 1 65.95 ? C3 GOL 205 B 1 HETATM 6 O O3 GOL . . . G 6 -1.176 23.324 11.153 1 74.3 ? O3 GOL 205 B 1 HETATM 7 H H11 GOL . . . G 6 1.947 23.332 14.026 1 62.62 ? H11 GOL 205 B 1 HETATM 8 H H12 GOL . . . G 6 0.962 22.851 15.119 1 62.62 ? H12 GOL 205 B 1 HETATM 9 H HO1 GOL . . . G 6 1.984 21.374 13.425 1 50.55 ? HO1 GOL 205 B 1 HETATM 10 H H2 GOL . . . G 6 -0.926 23.29 13.762 1 69.6 ? H2 GOL 205 B 1 HETATM 11 H H31 GOL . . . G 6 0.431 22.281 11.895 1 79.36 ? H31 GOL 205 B 1 HETATM 12 H H32 GOL . . . G 6 0.796 23.74 11.553 1 79.36 ? H32 GOL 205 B 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 36 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #