data_8AM0 # _model_server_result.job_id LcceL8KV3FZZZSuDdoXnAg _model_server_result.datetime_utc '2024-11-05 00:05:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8am0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":2001}' # _entry.id 8AM0 # _exptl.entry_id 8AM0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 407.371 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R)-2-[[2-[(4S)-4-[bis(fluoranyl)methyl]-2-oxidanylidene-1,3-oxazolidin-3-yl]-5,6-dihydroimidazo[1,2-d][1,4]benzoxazepin-9-yl]amino]propanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8AM0 _cell.length_a 99.81 _cell.length_b 107.68 _cell.length_c 136.3 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AM0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H19 F2 N5 O4' _chem_comp.formula_weight 407.371 _chem_comp.id MWF _chem_comp.mon_nstd_flag . _chem_comp.name (2R)-2-[[2-[(4S)-4-[bis(fluoranyl)methyl]-2-oxidanylidene-1,3-oxazolidin-3-yl]-5,6-dihydroimidazo[1,2-d][1,4]benzoxazepin-9-yl]amino]propanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Inavolisib # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C16 MWF sing 246 n n O3 C17 MWF sing 247 n n C16 C15 MWF sing 248 n n F2 C18 MWF sing 249 n n F1 C18 MWF sing 250 n n C18 C15 MWF sing 251 n n C17 O4 MWF doub 252 n n C17 N5 MWF sing 253 n n C15 N5 MWF sing 254 n n N5 C11 MWF sing 255 n n C11 C12 MWF doub 256 n y C11 N3 MWF sing 257 n y C12 N4 MWF sing 258 n y N3 C10 MWF doub 259 n y N4 C10 MWF sing 260 n y N4 C13 MWF sing 261 n n C10 C7 MWF sing 262 n n C13 C14 MWF sing 263 n n C8 C7 MWF doub 264 n y C8 C9 MWF sing 265 n y C7 C6 MWF sing 266 n y C9 C4 MWF doub 267 n y C14 O2 MWF sing 268 n n C6 O2 MWF sing 269 n n C6 C5 MWF doub 270 n y C4 C5 MWF sing 271 n y C4 N2 MWF sing 272 n n O1 C3 MWF doub 273 n n C1 C2 MWF sing 274 n n C3 C2 MWF sing 275 n n C3 N1 MWF sing 276 n n N2 C2 MWF sing 277 n n N1 H1 MWF sing 278 n n N1 H2 MWF sing 279 n n C5 H3 MWF sing 280 n n C8 H4 MWF sing 281 n n C13 H5 MWF sing 282 n n C13 H6 MWF sing 283 n n C15 H7 MWF sing 284 n n C1 H8 MWF sing 285 n n C1 H9 MWF sing 286 n n C1 H10 MWF sing 287 n n C2 H11 MWF sing 288 n n N2 H12 MWF sing 289 n n C9 H13 MWF sing 290 n n C12 H14 MWF sing 291 n n C14 H15 MWF sing 292 n n C14 H16 MWF sing 293 n n C16 H17 MWF sing 294 n n C16 H18 MWF sing 295 n n C18 H19 MWF sing 296 n n # _atom_sites.entry_id 8AM0 _atom_sites.fract_transf_matrix[1][1] 0.010019 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009287 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007337 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MWF A 1 2001 2001 MWF LIG . D 4 EDO A 1 2002 2101 EDO EDO . E 4 EDO A 1 2003 2103 EDO EDO . F 5 PGE A 1 2004 2201 PGE PGE . G 6 CL A 1 2005 2301 CL CL . H 4 EDO B 1 601 2102 EDO EDO . I 7 HOH A 1 2101 7 HOH HOH . I 7 HOH A 2 2102 129 HOH HOH . I 7 HOH A 3 2103 11 HOH HOH . I 7 HOH A 4 2104 131 HOH HOH . I 7 HOH A 5 2105 6 HOH HOH . I 7 HOH A 6 2106 9 HOH HOH . I 7 HOH A 7 2107 85 HOH HOH . I 7 HOH A 8 2108 143 HOH HOH . I 7 HOH A 9 2109 105 HOH HOH . I 7 HOH A 10 2110 57 HOH HOH . I 7 HOH A 11 2111 104 HOH HOH . I 7 HOH A 12 2112 173 HOH HOH . I 7 HOH A 13 2113 84 HOH HOH . I 7 HOH A 14 2114 50 HOH HOH . I 7 HOH A 15 2115 150 HOH HOH . I 7 HOH A 16 2116 61 HOH HOH . I 7 HOH A 17 2117 17 HOH HOH . I 7 HOH A 18 2118 92 HOH HOH . I 7 HOH A 19 2119 1 HOH HOH . I 7 HOH A 20 2120 161 HOH HOH . I 7 HOH A 21 2121 37 HOH HOH . I 7 HOH A 22 2122 152 HOH HOH . I 7 HOH A 23 2123 32 HOH HOH . I 7 HOH A 24 2124 133 HOH HOH . I 7 HOH A 25 2125 71 HOH HOH . I 7 HOH A 26 2126 86 HOH HOH . I 7 HOH A 27 2127 126 HOH HOH . I 7 HOH A 28 2128 127 HOH HOH . I 7 HOH A 29 2129 97 HOH HOH . I 7 HOH A 30 2130 18 HOH HOH . I 7 HOH A 31 2131 89 HOH HOH . I 7 HOH A 32 2132 12 HOH HOH . I 7 HOH A 33 2133 59 HOH HOH . I 7 HOH A 34 2134 62 HOH HOH . I 7 HOH A 35 2135 70 HOH HOH . I 7 HOH A 36 2136 182 HOH HOH . I 7 HOH A 37 2137 135 HOH HOH . I 7 HOH A 38 2138 156 HOH HOH . I 7 HOH A 39 2139 120 HOH HOH . I 7 HOH A 40 2140 132 HOH HOH . I 7 HOH A 41 2141 72 HOH HOH . I 7 HOH A 42 2142 24 HOH HOH . I 7 HOH A 43 2143 172 HOH HOH . I 7 HOH A 44 2144 108 HOH HOH . I 7 HOH A 45 2145 141 HOH HOH . I 7 HOH A 46 2146 77 HOH HOH . I 7 HOH A 47 2147 146 HOH HOH . I 7 HOH A 48 2148 39 HOH HOH . I 7 HOH A 49 2149 73 HOH HOH . I 7 HOH A 50 2150 177 HOH HOH . I 7 HOH A 51 2151 21 HOH HOH . I 7 HOH A 52 2152 63 HOH HOH . I 7 HOH A 53 2153 114 HOH HOH . I 7 HOH A 54 2154 47 HOH HOH . I 7 HOH A 55 2155 22 HOH HOH . I 7 HOH A 56 2156 54 HOH HOH . I 7 HOH A 57 2157 26 HOH HOH . I 7 HOH A 58 2158 90 HOH HOH . I 7 HOH A 59 2159 149 HOH HOH . I 7 HOH A 60 2160 75 HOH HOH . I 7 HOH A 61 2161 159 HOH HOH . I 7 HOH A 62 2162 166 HOH HOH . I 7 HOH A 63 2163 28 HOH HOH . I 7 HOH A 64 2164 95 HOH HOH . I 7 HOH A 65 2165 76 HOH HOH . I 7 HOH A 66 2166 107 HOH HOH . I 7 HOH A 67 2167 130 HOH HOH . I 7 HOH A 68 2168 144 HOH HOH . I 7 HOH A 69 2169 29 HOH HOH . I 7 HOH A 70 2170 151 HOH HOH . I 7 HOH A 71 2171 148 HOH HOH . I 7 HOH A 72 2172 180 HOH HOH . I 7 HOH A 73 2173 139 HOH HOH . I 7 HOH A 74 2174 140 HOH HOH . I 7 HOH A 75 2175 44 HOH HOH . I 7 HOH A 76 2176 157 HOH HOH . I 7 HOH A 77 2177 58 HOH HOH . I 7 HOH A 78 2178 183 HOH HOH . I 7 HOH A 79 2179 65 HOH HOH . I 7 HOH A 80 2180 189 HOH HOH . I 7 HOH A 81 2181 48 HOH HOH . I 7 HOH A 82 2182 162 HOH HOH . I 7 HOH A 83 2183 175 HOH HOH . I 7 HOH A 84 2184 42 HOH HOH . I 7 HOH A 85 2185 170 HOH HOH . I 7 HOH A 86 2186 93 HOH HOH . I 7 HOH A 87 2187 23 HOH HOH . I 7 HOH A 88 2188 124 HOH HOH . I 7 HOH A 89 2189 94 HOH HOH . I 7 HOH A 90 2190 53 HOH HOH . I 7 HOH A 91 2191 88 HOH HOH . I 7 HOH A 92 2192 82 HOH HOH . I 7 HOH A 93 2193 74 HOH HOH . I 7 HOH A 94 2194 67 HOH HOH . I 7 HOH A 95 2195 113 HOH HOH . I 7 HOH A 96 2196 164 HOH HOH . I 7 HOH A 97 2197 98 HOH HOH . I 7 HOH A 98 2198 14 HOH HOH . I 7 HOH A 99 2199 87 HOH HOH . I 7 HOH A 100 2200 96 HOH HOH . I 7 HOH A 101 2201 19 HOH HOH . I 7 HOH A 102 2202 165 HOH HOH . I 7 HOH A 103 2203 3 HOH HOH . I 7 HOH A 104 2204 43 HOH HOH . I 7 HOH A 105 2205 137 HOH HOH . I 7 HOH A 106 2206 15 HOH HOH . I 7 HOH A 107 2207 136 HOH HOH . I 7 HOH A 108 2208 128 HOH HOH . I 7 HOH A 109 2209 102 HOH HOH . I 7 HOH A 110 2210 155 HOH HOH . I 7 HOH A 111 2211 138 HOH HOH . I 7 HOH A 112 2212 45 HOH HOH . I 7 HOH A 113 2213 38 HOH HOH . I 7 HOH A 114 2214 163 HOH HOH . I 7 HOH A 115 2215 2 HOH HOH . I 7 HOH A 116 2216 81 HOH HOH . I 7 HOH A 117 2217 27 HOH HOH . I 7 HOH A 118 2218 158 HOH HOH . I 7 HOH A 119 2219 184 HOH HOH . I 7 HOH A 120 2220 117 HOH HOH . I 7 HOH A 121 2221 122 HOH HOH . I 7 HOH A 122 2222 31 HOH HOH . I 7 HOH A 123 2223 171 HOH HOH . I 7 HOH A 124 2224 68 HOH HOH . I 7 HOH A 125 2225 41 HOH HOH . I 7 HOH A 126 2226 25 HOH HOH . I 7 HOH A 127 2227 20 HOH HOH . I 7 HOH A 128 2228 55 HOH HOH . I 7 HOH A 129 2229 78 HOH HOH . I 7 HOH A 130 2230 145 HOH HOH . I 7 HOH A 131 2231 40 HOH HOH . I 7 HOH A 132 2232 116 HOH HOH . I 7 HOH A 133 2233 8 HOH HOH . I 7 HOH A 134 2234 99 HOH HOH . I 7 HOH A 135 2235 125 HOH HOH . I 7 HOH A 136 2236 142 HOH HOH . I 7 HOH A 137 2237 91 HOH HOH . I 7 HOH A 138 2238 46 HOH HOH . I 7 HOH A 139 2239 109 HOH HOH . I 7 HOH A 140 2240 13 HOH HOH . I 7 HOH A 141 2241 123 HOH HOH . I 7 HOH A 142 2242 69 HOH HOH . I 7 HOH A 143 2243 181 HOH HOH . I 7 HOH A 144 2244 100 HOH HOH . I 7 HOH A 145 2245 103 HOH HOH . I 7 HOH A 146 2246 10 HOH HOH . I 7 HOH A 147 2247 160 HOH HOH . I 7 HOH A 148 2248 16 HOH HOH . I 7 HOH A 149 2249 115 HOH HOH . I 7 HOH A 150 2250 64 HOH HOH . I 7 HOH A 151 2251 56 HOH HOH . I 7 HOH A 152 2252 49 HOH HOH . I 7 HOH A 153 2253 179 HOH HOH . I 7 HOH A 154 2254 5 HOH HOH . I 7 HOH A 155 2255 80 HOH HOH . I 7 HOH A 156 2256 147 HOH HOH . I 7 HOH A 157 2257 112 HOH HOH . I 7 HOH A 158 2258 154 HOH HOH . I 7 HOH A 159 2259 188 HOH HOH . I 7 HOH A 160 2260 185 HOH HOH . I 7 HOH A 161 2261 186 HOH HOH . I 7 HOH A 162 2262 118 HOH HOH . I 7 HOH A 163 2263 33 HOH HOH . I 7 HOH A 164 2264 4 HOH HOH . I 7 HOH A 165 2265 187 HOH HOH . I 7 HOH A 166 2266 35 HOH HOH . I 7 HOH A 167 2267 110 HOH HOH . I 7 HOH A 168 2268 34 HOH HOH . I 7 HOH A 169 2269 168 HOH HOH . J 7 HOH B 1 701 51 HOH HOH . J 7 HOH B 2 702 178 HOH HOH . J 7 HOH B 3 703 66 HOH HOH . J 7 HOH B 4 704 60 HOH HOH . J 7 HOH B 5 705 134 HOH HOH . J 7 HOH B 6 706 111 HOH HOH . J 7 HOH B 7 707 79 HOH HOH . J 7 HOH B 8 708 36 HOH HOH . J 7 HOH B 9 709 52 HOH HOH . J 7 HOH B 10 710 169 HOH HOH . J 7 HOH B 11 711 153 HOH HOH . J 7 HOH B 12 712 121 HOH HOH . J 7 HOH B 13 713 101 HOH HOH . J 7 HOH B 14 714 119 HOH HOH . J 7 HOH B 15 715 30 HOH HOH . J 7 HOH B 16 716 167 HOH HOH . J 7 HOH B 17 717 174 HOH HOH . J 7 HOH B 18 718 106 HOH HOH . J 7 HOH B 19 719 176 HOH HOH . J 7 HOH B 20 720 83 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 MWF . . . C 3 0.395 -6.365 -13.579 1 45.75 ? N1 MWF 2001 A 1 HETATM 2 N N3 MWF . . . C 3 2.378 -10.073 -19.367 1 45.69 ? N3 MWF 2001 A 1 HETATM 3 C C4 MWF . . . C 3 0.022 -9.456 -14.917 1 45.68 ? C4 MWF 2001 A 1 HETATM 4 C C5 MWF . . . C 3 0.792 -10.619 -14.791 1 45.67 ? C5 MWF 2001 A 1 HETATM 5 C C6 MWF . . . C 3 1.647 -11.006 -15.808 1 45.65 ? C6 MWF 2001 A 1 HETATM 6 C C7 MWF . . . C 3 1.662 -10.305 -17.029 1 45.67 ? C7 MWF 2001 A 1 HETATM 7 C C8 MWF . . . C 3 0.855 -9.175 -17.155 1 45.65 ? C8 MWF 2001 A 1 HETATM 8 C C10 MWF . . . C 3 2.485 -10.69 -18.193 1 45.67 ? C10 MWF 2001 A 1 HETATM 9 C C13 MWF . . . C 3 3.962 -12.592 -17.261 1 45.65 ? C13 MWF 2001 A 1 HETATM 10 C C15 MWF . . . C 3 2.408 -9.32 -22.189 1 45.79 ? C15 MWF 2001 A 1 HETATM 11 C C17 MWF . . . C 3 4.374 -10.602 -22.382 1 45.76 ? C17 MWF 2001 A 1 HETATM 12 C C1 MWF . . . C 3 -2.926 -7.945 -14.262 1 45.8 ? C1 MWF 2001 A 1 HETATM 13 C C2 MWF . . . C 3 -1.534 -7.855 -13.653 1 45.77 ? C2 MWF 2001 A 1 HETATM 14 C C3 MWF . . . C 3 -0.811 -6.571 -14.085 1 45.77 ? C3 MWF 2001 A 1 HETATM 15 O O1 MWF . . . C 3 -1.354 -5.788 -14.864 1 45.8 ? O1 MWF 2001 A 1 HETATM 16 N N2 MWF . . . C 3 -0.777 -9.081 -13.849 1 45.74 ? N2 MWF 2001 A 1 HETATM 17 C C9 MWF . . . C 3 0.038 -8.761 -16.126 1 45.66 ? C9 MWF 2001 A 1 HETATM 18 C C11 MWF . . . C 3 3.26 -10.638 -20.192 1 45.7 ? C11 MWF 2001 A 1 HETATM 19 C C12 MWF . . . C 3 3.95 -11.632 -19.564 1 45.65 ? C12 MWF 2001 A 1 HETATM 20 N N4 MWF . . . C 3 3.455 -11.667 -18.274 1 45.66 ? N4 MWF 2001 A 1 HETATM 21 C C14 MWF . . . C 3 3.77 -12.072 -15.89 1 45.62 ? C14 MWF 2001 A 1 HETATM 22 O O2 MWF . . . C 3 2.38 -12.141 -15.63 1 45.62 ? O2 MWF 2001 A 1 HETATM 23 N N5 MWF . . . C 3 3.378 -10.223 -21.534 1 45.75 ? N5 MWF 2001 A 1 HETATM 24 C C16 MWF . . . C 3 3.219 -8.955 -23.434 1 45.79 ? C16 MWF 2001 A 1 HETATM 25 O O3 MWF . . . C 3 4.149 -10.049 -23.594 1 45.77 ? O3 MWF 2001 A 1 HETATM 26 O O4 MWF . . . C 3 5.313 -11.336 -22.171 1 45.75 ? O4 MWF 2001 A 1 HETATM 27 C C18 MWF . . . C 3 1.148 -10.1 -22.517 1 45.85 ? C18 MWF 2001 A 1 HETATM 28 F F1 MWF . . . C 3 0.233 -9.352 -23.121 1 45.91 ? F1 MWF 2001 A 1 HETATM 29 F F2 MWF . . . C 3 1.387 -11.148 -23.297 1 45.88 ? F2 MWF 2001 A 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 29 #