data_8AM0 # _model_server_result.job_id PtkN0GLSMMwBK4ZqoivGSw _model_server_result.datetime_utc '2024-11-05 00:02:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8am0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2002}' # _entry.id 8AM0 # _exptl.entry_id 8AM0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8AM0 _cell.length_a 99.81 _cell.length_b 107.68 _cell.length_c 136.3 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AM0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 H N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8AM0 _atom_sites.fract_transf_matrix[1][1] 0.010019 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009287 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007337 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MWF A 1 2001 2001 MWF LIG . D 4 EDO A 1 2002 2101 EDO EDO . E 4 EDO A 1 2003 2103 EDO EDO . F 5 PGE A 1 2004 2201 PGE PGE . G 6 CL A 1 2005 2301 CL CL . H 4 EDO B 1 601 2102 EDO EDO . I 7 HOH A 1 2101 7 HOH HOH . I 7 HOH A 2 2102 129 HOH HOH . I 7 HOH A 3 2103 11 HOH HOH . I 7 HOH A 4 2104 131 HOH HOH . I 7 HOH A 5 2105 6 HOH HOH . I 7 HOH A 6 2106 9 HOH HOH . I 7 HOH A 7 2107 85 HOH HOH . I 7 HOH A 8 2108 143 HOH HOH . I 7 HOH A 9 2109 105 HOH HOH . I 7 HOH A 10 2110 57 HOH HOH . I 7 HOH A 11 2111 104 HOH HOH . I 7 HOH A 12 2112 173 HOH HOH . I 7 HOH A 13 2113 84 HOH HOH . I 7 HOH A 14 2114 50 HOH HOH . I 7 HOH A 15 2115 150 HOH HOH . I 7 HOH A 16 2116 61 HOH HOH . I 7 HOH A 17 2117 17 HOH HOH . I 7 HOH A 18 2118 92 HOH HOH . I 7 HOH A 19 2119 1 HOH HOH . I 7 HOH A 20 2120 161 HOH HOH . I 7 HOH A 21 2121 37 HOH HOH . I 7 HOH A 22 2122 152 HOH HOH . I 7 HOH A 23 2123 32 HOH HOH . I 7 HOH A 24 2124 133 HOH HOH . I 7 HOH A 25 2125 71 HOH HOH . I 7 HOH A 26 2126 86 HOH HOH . I 7 HOH A 27 2127 126 HOH HOH . I 7 HOH A 28 2128 127 HOH HOH . I 7 HOH A 29 2129 97 HOH HOH . I 7 HOH A 30 2130 18 HOH HOH . I 7 HOH A 31 2131 89 HOH HOH . I 7 HOH A 32 2132 12 HOH HOH . I 7 HOH A 33 2133 59 HOH HOH . I 7 HOH A 34 2134 62 HOH HOH . I 7 HOH A 35 2135 70 HOH HOH . I 7 HOH A 36 2136 182 HOH HOH . I 7 HOH A 37 2137 135 HOH HOH . I 7 HOH A 38 2138 156 HOH HOH . I 7 HOH A 39 2139 120 HOH HOH . I 7 HOH A 40 2140 132 HOH HOH . I 7 HOH A 41 2141 72 HOH HOH . I 7 HOH A 42 2142 24 HOH HOH . I 7 HOH A 43 2143 172 HOH HOH . I 7 HOH A 44 2144 108 HOH HOH . I 7 HOH A 45 2145 141 HOH HOH . I 7 HOH A 46 2146 77 HOH HOH . I 7 HOH A 47 2147 146 HOH HOH . I 7 HOH A 48 2148 39 HOH HOH . I 7 HOH A 49 2149 73 HOH HOH . I 7 HOH A 50 2150 177 HOH HOH . I 7 HOH A 51 2151 21 HOH HOH . I 7 HOH A 52 2152 63 HOH HOH . I 7 HOH A 53 2153 114 HOH HOH . I 7 HOH A 54 2154 47 HOH HOH . I 7 HOH A 55 2155 22 HOH HOH . I 7 HOH A 56 2156 54 HOH HOH . I 7 HOH A 57 2157 26 HOH HOH . I 7 HOH A 58 2158 90 HOH HOH . I 7 HOH A 59 2159 149 HOH HOH . I 7 HOH A 60 2160 75 HOH HOH . I 7 HOH A 61 2161 159 HOH HOH . I 7 HOH A 62 2162 166 HOH HOH . I 7 HOH A 63 2163 28 HOH HOH . I 7 HOH A 64 2164 95 HOH HOH . I 7 HOH A 65 2165 76 HOH HOH . I 7 HOH A 66 2166 107 HOH HOH . I 7 HOH A 67 2167 130 HOH HOH . I 7 HOH A 68 2168 144 HOH HOH . I 7 HOH A 69 2169 29 HOH HOH . I 7 HOH A 70 2170 151 HOH HOH . I 7 HOH A 71 2171 148 HOH HOH . I 7 HOH A 72 2172 180 HOH HOH . I 7 HOH A 73 2173 139 HOH HOH . I 7 HOH A 74 2174 140 HOH HOH . I 7 HOH A 75 2175 44 HOH HOH . I 7 HOH A 76 2176 157 HOH HOH . I 7 HOH A 77 2177 58 HOH HOH . I 7 HOH A 78 2178 183 HOH HOH . I 7 HOH A 79 2179 65 HOH HOH . I 7 HOH A 80 2180 189 HOH HOH . I 7 HOH A 81 2181 48 HOH HOH . I 7 HOH A 82 2182 162 HOH HOH . I 7 HOH A 83 2183 175 HOH HOH . I 7 HOH A 84 2184 42 HOH HOH . I 7 HOH A 85 2185 170 HOH HOH . I 7 HOH A 86 2186 93 HOH HOH . I 7 HOH A 87 2187 23 HOH HOH . I 7 HOH A 88 2188 124 HOH HOH . I 7 HOH A 89 2189 94 HOH HOH . I 7 HOH A 90 2190 53 HOH HOH . I 7 HOH A 91 2191 88 HOH HOH . I 7 HOH A 92 2192 82 HOH HOH . I 7 HOH A 93 2193 74 HOH HOH . I 7 HOH A 94 2194 67 HOH HOH . I 7 HOH A 95 2195 113 HOH HOH . I 7 HOH A 96 2196 164 HOH HOH . I 7 HOH A 97 2197 98 HOH HOH . I 7 HOH A 98 2198 14 HOH HOH . I 7 HOH A 99 2199 87 HOH HOH . I 7 HOH A 100 2200 96 HOH HOH . I 7 HOH A 101 2201 19 HOH HOH . I 7 HOH A 102 2202 165 HOH HOH . I 7 HOH A 103 2203 3 HOH HOH . I 7 HOH A 104 2204 43 HOH HOH . I 7 HOH A 105 2205 137 HOH HOH . I 7 HOH A 106 2206 15 HOH HOH . I 7 HOH A 107 2207 136 HOH HOH . I 7 HOH A 108 2208 128 HOH HOH . I 7 HOH A 109 2209 102 HOH HOH . I 7 HOH A 110 2210 155 HOH HOH . I 7 HOH A 111 2211 138 HOH HOH . I 7 HOH A 112 2212 45 HOH HOH . I 7 HOH A 113 2213 38 HOH HOH . I 7 HOH A 114 2214 163 HOH HOH . I 7 HOH A 115 2215 2 HOH HOH . I 7 HOH A 116 2216 81 HOH HOH . I 7 HOH A 117 2217 27 HOH HOH . I 7 HOH A 118 2218 158 HOH HOH . I 7 HOH A 119 2219 184 HOH HOH . I 7 HOH A 120 2220 117 HOH HOH . I 7 HOH A 121 2221 122 HOH HOH . I 7 HOH A 122 2222 31 HOH HOH . I 7 HOH A 123 2223 171 HOH HOH . I 7 HOH A 124 2224 68 HOH HOH . I 7 HOH A 125 2225 41 HOH HOH . I 7 HOH A 126 2226 25 HOH HOH . I 7 HOH A 127 2227 20 HOH HOH . I 7 HOH A 128 2228 55 HOH HOH . I 7 HOH A 129 2229 78 HOH HOH . I 7 HOH A 130 2230 145 HOH HOH . I 7 HOH A 131 2231 40 HOH HOH . I 7 HOH A 132 2232 116 HOH HOH . I 7 HOH A 133 2233 8 HOH HOH . I 7 HOH A 134 2234 99 HOH HOH . I 7 HOH A 135 2235 125 HOH HOH . I 7 HOH A 136 2236 142 HOH HOH . I 7 HOH A 137 2237 91 HOH HOH . I 7 HOH A 138 2238 46 HOH HOH . I 7 HOH A 139 2239 109 HOH HOH . I 7 HOH A 140 2240 13 HOH HOH . I 7 HOH A 141 2241 123 HOH HOH . I 7 HOH A 142 2242 69 HOH HOH . I 7 HOH A 143 2243 181 HOH HOH . I 7 HOH A 144 2244 100 HOH HOH . I 7 HOH A 145 2245 103 HOH HOH . I 7 HOH A 146 2246 10 HOH HOH . I 7 HOH A 147 2247 160 HOH HOH . I 7 HOH A 148 2248 16 HOH HOH . I 7 HOH A 149 2249 115 HOH HOH . I 7 HOH A 150 2250 64 HOH HOH . I 7 HOH A 151 2251 56 HOH HOH . I 7 HOH A 152 2252 49 HOH HOH . I 7 HOH A 153 2253 179 HOH HOH . I 7 HOH A 154 2254 5 HOH HOH . I 7 HOH A 155 2255 80 HOH HOH . I 7 HOH A 156 2256 147 HOH HOH . I 7 HOH A 157 2257 112 HOH HOH . I 7 HOH A 158 2258 154 HOH HOH . I 7 HOH A 159 2259 188 HOH HOH . I 7 HOH A 160 2260 185 HOH HOH . I 7 HOH A 161 2261 186 HOH HOH . I 7 HOH A 162 2262 118 HOH HOH . I 7 HOH A 163 2263 33 HOH HOH . I 7 HOH A 164 2264 4 HOH HOH . I 7 HOH A 165 2265 187 HOH HOH . I 7 HOH A 166 2266 35 HOH HOH . I 7 HOH A 167 2267 110 HOH HOH . I 7 HOH A 168 2268 34 HOH HOH . I 7 HOH A 169 2269 168 HOH HOH . J 7 HOH B 1 701 51 HOH HOH . J 7 HOH B 2 702 178 HOH HOH . J 7 HOH B 3 703 66 HOH HOH . J 7 HOH B 4 704 60 HOH HOH . J 7 HOH B 5 705 134 HOH HOH . J 7 HOH B 6 706 111 HOH HOH . J 7 HOH B 7 707 79 HOH HOH . J 7 HOH B 8 708 36 HOH HOH . J 7 HOH B 9 709 52 HOH HOH . J 7 HOH B 10 710 169 HOH HOH . J 7 HOH B 11 711 153 HOH HOH . J 7 HOH B 12 712 121 HOH HOH . J 7 HOH B 13 713 101 HOH HOH . J 7 HOH B 14 714 119 HOH HOH . J 7 HOH B 15 715 30 HOH HOH . J 7 HOH B 16 716 167 HOH HOH . J 7 HOH B 17 717 174 HOH HOH . J 7 HOH B 18 718 106 HOH HOH . J 7 HOH B 19 719 176 HOH HOH . J 7 HOH B 20 720 83 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 4 3.858 -23.67 -49.961 1 51.89 ? C1 EDO 2002 A 1 HETATM 2 O O1 EDO . . . D 4 4.385 -24.952 -49.66 1 51.89 ? O1 EDO 2002 A 1 HETATM 3 C C2 EDO . . . D 4 4.909 -22.826 -50.641 1 51.86 ? C2 EDO 2002 A 1 HETATM 4 O O2 EDO . . . D 4 4.417 -22.331 -51.876 1 51.83 ? O2 EDO 2002 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #