data_8AM1 # _model_server_result.job_id T6pAh34LU6iRFRMeuRXKgg _model_server_result.datetime_utc '2024-11-22 20:05:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8am1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":610}' # _entry.id 8AM1 # _exptl.entry_id 8AM1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 35.453 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHLORIDE ION' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8AM1 _cell.length_a 154.91 _cell.length_b 154.91 _cell.length_c 134.97 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AM1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall 'I 4 2' _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 M N N ? 6 N N N ? 6 O N N ? 6 P N N ? 6 Q N N ? 6 R N N ? 6 S N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 621 NAG 2 n B NAG 2 B 2 NAG A 623 NAG 2 n B FUC 3 B 3 FUC A 622 FUC 2 n C NAG 1 C 1 NAG A 641 NAG 2 n C NAG 2 C 2 NAG A 643 NAG 2 n C FUC 3 C 3 FUC A 642 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 65 A CYS 65 1_555 A SG CYS 92 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 252 A CYS 252 1_555 A SG CYS 263 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf3 A SG CYS 400 A CYS 400 1_555 A SG CYS 519 A CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? covale ? covale1 A ND2 ASN 57 A ASN 57 1_555 D C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? covale ? covale2 A ND2 ASN 106 A ASN 106 1_555 E C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale3 A ND2 ASN 241 A ASN 241 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale4 A ND2 ASN 256 A ASN 256 1_555 F C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale5 A ND2 ASN 341 A ASN 341 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale6 A ND2 ASN 485 A ASN 485 1_555 G C1 NAG . A NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale7 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale8 B O6 NAG . B NAG 1 1_555 B C1 FUC . B FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale9 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale10 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? metalc ? metalc1 W ZN ZN . A ZN 620 1_555 X O07 LWL . A LWL 621 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc2 W ZN ZN . A ZN 620 1_555 X N09 LWL . A LWL 621 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? metalc ? metalc3 W ZN ZN . A ZN 620 1_555 X N16 LWL . A LWL 621 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc4 W ZN ZN . A ZN 620 1_555 Y O07 LWL . A LWL 622 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.955 ? metalc ? metalc5 W ZN ZN . A ZN 620 1_555 Y O07 LWL . A LWL 622 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.965 ? metalc ? metalc6 W ZN ZN . A ZN 620 1_555 Y N09 LWL . A LWL 622 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.488 ? metalc ? metalc7 W ZN ZN . A ZN 620 1_555 Y N09 LWL . A LWL 622 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.532 ? # _chem_comp.formula 'Cl -1' _chem_comp.formula_weight 35.453 _chem_comp.id CL _chem_comp.mon_nstd_flag . _chem_comp.name 'CHLORIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8AM1 _atom_sites.fract_transf_matrix[1][1] 0.006455 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006455 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007409 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 NAG A 1 601 601 NAG NAG . E 3 NAG A 1 602 611 NAG NAG . F 3 NAG A 1 603 631 NAG NAG . G 3 NAG A 1 604 651 NAG NAG . H 4 NH4 A 1 605 701 NH4 NH4 . I 5 GOL A 1 606 702 GOL GOL . J 5 GOL A 1 607 703 GOL GOL . K 5 GOL A 1 608 704 GOL GOL . L 5 GOL A 1 609 705 GOL GOL . M 6 CL A 1 610 710 CL CL . N 6 CL A 1 611 711 CL CL . O 6 CL A 1 612 712 CL CL . P 6 CL A 1 613 713 CL CL . Q 6 CL A 1 614 714 CL CL . R 6 CL A 1 615 715 CL CL . S 6 CL A 1 616 716 CL CL . T 7 SO4 A 1 617 720 SO4 SO4 . U 7 SO4 A 1 618 721 SO4 SO4 . V 8 ZN A 1 619 730 ZN ZN . W 8 ZN A 1 620 801 ZN ZN . X 9 LWL A 1 621 802 LWL GIR . Y 9 LWL A 1 622 803 LWL GIR . Z 10 HOH A 1 701 94 HOH HOH . Z 10 HOH A 2 702 33 HOH HOH . Z 10 HOH A 3 703 54 HOH HOH . Z 10 HOH A 4 704 40 HOH HOH . Z 10 HOH A 5 705 52 HOH HOH . Z 10 HOH A 6 706 53 HOH HOH . Z 10 HOH A 7 707 1 HOH HOH . Z 10 HOH A 8 708 82 HOH HOH . Z 10 HOH A 9 709 85 HOH HOH . Z 10 HOH A 10 710 8 HOH HOH . Z 10 HOH A 11 711 25 HOH HOH . Z 10 HOH A 12 712 7 HOH HOH . Z 10 HOH A 13 713 65 HOH HOH . Z 10 HOH A 14 714 36 HOH HOH . Z 10 HOH A 15 715 20 HOH HOH . Z 10 HOH A 16 716 84 HOH HOH . Z 10 HOH A 17 717 42 HOH HOH . Z 10 HOH A 18 718 9 HOH HOH . Z 10 HOH A 19 719 64 HOH HOH . Z 10 HOH A 20 720 17 HOH HOH . Z 10 HOH A 21 721 61 HOH HOH . Z 10 HOH A 22 722 10 HOH HOH . Z 10 HOH A 23 723 60 HOH HOH . Z 10 HOH A 24 724 31 HOH HOH . Z 10 HOH A 25 725 77 HOH HOH . Z 10 HOH A 26 726 35 HOH HOH . Z 10 HOH A 27 727 30 HOH HOH . Z 10 HOH A 28 728 51 HOH HOH . Z 10 HOH A 29 729 16 HOH HOH . Z 10 HOH A 30 730 49 HOH HOH . Z 10 HOH A 31 731 24 HOH HOH . Z 10 HOH A 32 732 18 HOH HOH . Z 10 HOH A 33 733 48 HOH HOH . Z 10 HOH A 34 734 19 HOH HOH . Z 10 HOH A 35 735 23 HOH HOH . Z 10 HOH A 36 736 13 HOH HOH . Z 10 HOH A 37 737 28 HOH HOH . Z 10 HOH A 38 738 12 HOH HOH . Z 10 HOH A 39 739 5 HOH HOH . Z 10 HOH A 40 740 22 HOH HOH . Z 10 HOH A 41 741 11 HOH HOH . Z 10 HOH A 42 742 45 HOH HOH . Z 10 HOH A 43 743 37 HOH HOH . Z 10 HOH A 44 744 59 HOH HOH . Z 10 HOH A 45 745 62 HOH HOH . Z 10 HOH A 46 746 66 HOH HOH . Z 10 HOH A 47 747 46 HOH HOH . Z 10 HOH A 48 748 43 HOH HOH . Z 10 HOH A 49 749 50 HOH HOH . Z 10 HOH A 50 750 90 HOH HOH . Z 10 HOH A 51 751 67 HOH HOH . Z 10 HOH A 52 752 21 HOH HOH . Z 10 HOH A 53 753 39 HOH HOH . Z 10 HOH A 54 754 2 HOH HOH . Z 10 HOH A 55 755 91 HOH HOH . Z 10 HOH A 56 756 32 HOH HOH . Z 10 HOH A 57 757 80 HOH HOH . Z 10 HOH A 58 758 72 HOH HOH . Z 10 HOH A 59 759 3 HOH HOH . Z 10 HOH A 60 760 47 HOH HOH . Z 10 HOH A 61 761 14 HOH HOH . Z 10 HOH A 62 762 74 HOH HOH . Z 10 HOH A 63 763 73 HOH HOH . Z 10 HOH A 64 764 81 HOH HOH . Z 10 HOH A 65 765 38 HOH HOH . Z 10 HOH A 66 766 26 HOH HOH . Z 10 HOH A 67 767 15 HOH HOH . Z 10 HOH A 68 768 41 HOH HOH . Z 10 HOH A 69 769 27 HOH HOH . Z 10 HOH A 70 770 34 HOH HOH . Z 10 HOH A 71 771 71 HOH HOH . Z 10 HOH A 72 772 79 HOH HOH . Z 10 HOH A 73 773 58 HOH HOH . Z 10 HOH A 74 774 57 HOH HOH . Z 10 HOH A 75 775 92 HOH HOH . Z 10 HOH A 76 776 63 HOH HOH . Z 10 HOH A 77 777 68 HOH HOH . Z 10 HOH A 78 778 93 HOH HOH . Z 10 HOH A 79 779 44 HOH HOH . Z 10 HOH A 80 780 55 HOH HOH . Z 10 HOH A 81 781 83 HOH HOH . Z 10 HOH A 82 782 56 HOH HOH . Z 10 HOH A 83 783 89 HOH HOH . Z 10 HOH A 84 784 88 HOH HOH . Z 10 HOH A 85 785 78 HOH HOH . Z 10 HOH A 86 786 4 HOH HOH . Z 10 HOH A 87 787 29 HOH HOH . Z 10 HOH A 88 788 6 HOH HOH . Z 10 HOH A 89 789 95 HOH HOH . Z 10 HOH A 90 790 70 HOH HOH . Z 10 HOH A 91 791 69 HOH HOH . Z 10 HOH A 92 792 87 HOH HOH . Z 10 HOH A 93 793 86 HOH HOH . Z 10 HOH A 94 794 75 HOH HOH . Z 10 HOH A 95 795 76 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CL _atom_site.label_atom_id CL _atom_site.label_comp_id CL _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id M _atom_site.label_entity_id 6 _atom_site.Cartn_x -8.245 _atom_site.Cartn_y -54.065 _atom_site.Cartn_z 2.049 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 102.53 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CL _atom_site.auth_comp_id CL _atom_site.auth_seq_id 610 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #