data_8AMP
#
_model_server_result.job_id            vD7cJUHspLMrOom01uL5TQ 
_model_server_result.datetime_utc      '2025-03-06 03:34:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8amp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":101}' 
#
_entry.id    8AMP 
#
_exptl.entry_id    8AMP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              295.795 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FE3-S4 CLUSTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8AMP 
_cell.length_a            46.959 
_cell.length_b            46.959 
_cell.length_c            162.674 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8AMP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    'R 3 2"' 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 12 A CYS 12 1_555 B FE4 F3S . A F3S 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? 
metalc ? metalc2 A SG CYS 18 A CYS 18 1_555 B FE3 F3S . A F3S 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc3 A NE2 HIS 51 A HIS 51 1_555 C FE FE . A FE 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
metalc ? metalc4 A NE2 HIS 51 A HIS 51 1_555 C FE FE . A FE 102 2_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc5 A SG CYS 56 A CYS 56 1_555 B FE1 F3S . A F3S 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? 
metalc ? metalc6 C FE FE . A FE 102 1_555 D O HOH . A HOH 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? 
metalc ? metalc7 C FE FE . A FE 102 1_555 D O HOH . A HOH 205 2_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? 
#
_chem_comp.formula           'Fe3 S4' 
_chem_comp.formula_weight    295.795 
_chem_comp.id                F3S 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FE3-S4 CLUSTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE1 S1 F3S sing 67 n n 
FE1 S2 F3S sing 68 n n 
FE1 S3 F3S sing 69 n n 
FE3 S1 F3S sing 70 n n 
FE3 S3 F3S sing 71 n n 
FE3 S4 F3S sing 72 n n 
FE4 S2 F3S sing 73 n n 
FE4 S3 F3S sing 74 n n 
FE4 S4 F3S sing 75 n n 
#
_atom_sites.entry_id                     8AMP 
_atom_sites.fract_transf_matrix[1][1]    0.021295 
_atom_sites.fract_transf_matrix[1][2]    0.012295 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02459 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006147 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 F3S A 1 101 101 F3S F3S . 
C 3 FE A 1 102 201 FE FE . 
D 4 HOH A 1 201 205 HOH HOH . 
D 4 HOH A 2 202 204 HOH HOH . 
D 4 HOH A 3 203 203 HOH HOH . 
D 4 HOH A 4 204 206 HOH HOH . 
D 4 HOH A 5 205 202 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE1 F3S . . . B 2 -7.384 -13.222 -7.222 1 55.18 ? FE1 F3S 101 A 1 
HETATM 2 FE FE3 F3S . . . B 2 -7.007 -14.326 -9.588 1 50.88 ? FE3 F3S 101 A 1 
HETATM 3 FE FE4 F3S . . . B 2 -4.991 -13.448 -8.256 1 56.66 ? FE4 F3S 101 A 1 
HETATM 4 S S1 F3S . . . B 2 -8.354 -15.113 -7.963 1 47.92 ? S1 F3S 101 A 1 
HETATM 5 S S2 F3S . . . B 2 -5.517 -13.811 -6.096 1 59.74 ? S2 F3S 101 A 1 
HETATM 6 S S3 F3S . . . B 2 -6.648 -12.161 -9.071 1 54.88 ? S3 F3S 101 A 1 
HETATM 7 S S4 F3S . . . B 2 -5.013 -15.372 -9.43 1 58.74 ? S4 F3S 101 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           7 
#