data_8AMY # _model_server_result.job_id JY4rAYajyE7MHnH8TNADsg _model_server_result.datetime_utc '2024-11-21 19:03:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8amy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 8AMY # _exptl.entry_id 8AMY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.237 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8AMY _cell.length_a 52.86 _cell.length_b 52.86 _cell.length_c 137.43 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AMY _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall 'I 4bw 2bw' _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? -1 0 0 0 1 0 0 0 -1 26.435 0 103.0725 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 10 A CYS 10 1_555 A SG CYS 51 A CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf2 A SG CYS 18 A CYS 18 1_555 A SG CYS 34 A CYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 A SG CYS 22 A CYS 22 1_555 A SG CYS 30 A CYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? disulf ? disulf4 A SG CYS 57 A CYS 57 1_555 A SG CYS 89 A CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 A SG CYS 61 A CYS 61 1_555 A SG CYS 71 A CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc1 A OE1 GLU 14 A GLU 14 1_555 G ZN ZN . A ZN 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc2 A OE2 GLU 14 A GLU 14 1_555 G ZN ZN . A ZN 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? metalc ? metalc3 A OE1 GLU 14 A GLU 14 1_555 G ZN ZN . A ZN 506 10_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc4 A OE2 GLU 14 A GLU 14 1_555 G ZN ZN . A ZN 506 10_655 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? metalc ? metalc5 A NE2 HIS 42 A HIS 42 1_555 G ZN ZN . A ZN 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc6 A NE2 HIS 42 A HIS 42 1_555 G ZN ZN . A ZN 506 10_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc7 A OG1 THR 52 A THR 52 1_555 H NA NA . A NA 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.051 ? metalc ? metalc8 H NA NA . A NA 507 1_555 I O HOH . A HOH 637 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc9 H NA NA . A NA 507 1_555 I O HOH . A HOH 637 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.077 ? metalc ? metalc10 H NA NA . A NA 507 1_555 I O HOH . A HOH 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc11 H NA NA . A NA 507 1_555 I O HOH . A HOH 644 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? # _chem_comp.formula 'C6 H13 N O4 S' _chem_comp.formula_weight 195.237 _chem_comp.id MES _chem_comp.mon_nstd_flag . _chem_comp.name '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 MES sing 222 n n O1 C6 MES sing 223 n n C2 C3 MES sing 224 n n C2 H21 MES sing 225 n n C2 H22 MES sing 226 n n C3 N4 MES sing 227 n n C3 H31 MES sing 228 n n C3 H32 MES sing 229 n n N4 C5 MES sing 230 n n N4 C7 MES sing 231 n n N4 HN4 MES sing 232 n n C5 C6 MES sing 233 n n C5 H51 MES sing 234 n n C5 H52 MES sing 235 n n C6 H61 MES sing 236 n n C6 H62 MES sing 237 n n C7 C8 MES sing 238 n n C7 H71 MES sing 239 n n C7 H72 MES sing 240 n n C8 S MES sing 241 n n C8 H81 MES sing 242 n n C8 H82 MES sing 243 n n S O1S MES doub 244 n n S O2S MES doub 245 n n S O3S MES sing 246 n n # _atom_sites.entry_id 8AMY _atom_sites.fract_transf_matrix[1][1] 0.018918 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018918 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007276 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MES A 1 501 501 MES MES . C 3 P4G A 1 502 502 P4G P4G . D 4 BCT A 1 503 503 BCT BCT . E 5 SO4 A 1 504 1 SO4 SO4 . F 5 SO4 A 1 505 2 SO4 SO4 . G 6 ZN A 1 506 1 ZN ZN . H 7 NA A 1 507 1 NA NA . I 8 HOH A 1 601 6 HOH HOH . I 8 HOH A 2 602 94 HOH HOH . I 8 HOH A 3 603 26 HOH HOH . I 8 HOH A 4 604 100 HOH HOH . I 8 HOH A 5 605 47 HOH HOH . I 8 HOH A 6 606 34 HOH HOH . I 8 HOH A 7 607 10 HOH HOH . I 8 HOH A 8 608 2 HOH HOH . I 8 HOH A 9 609 37 HOH HOH . I 8 HOH A 10 610 27 HOH HOH . I 8 HOH A 11 611 57 HOH HOH . I 8 HOH A 12 612 19 HOH HOH . I 8 HOH A 13 613 22 HOH HOH . I 8 HOH A 14 614 38 HOH HOH . I 8 HOH A 15 615 24 HOH HOH . I 8 HOH A 16 616 31 HOH HOH . I 8 HOH A 17 617 87 HOH HOH . I 8 HOH A 18 618 76 HOH HOH . I 8 HOH A 19 619 7 HOH HOH . I 8 HOH A 20 620 71 HOH HOH . I 8 HOH A 21 621 67 HOH HOH . I 8 HOH A 22 622 1 HOH HOH . I 8 HOH A 23 623 66 HOH HOH . I 8 HOH A 24 624 21 HOH HOH . I 8 HOH A 25 625 8 HOH HOH . I 8 HOH A 26 626 5 HOH HOH . I 8 HOH A 27 627 46 HOH HOH . I 8 HOH A 28 628 40 HOH HOH . I 8 HOH A 29 629 25 HOH HOH . I 8 HOH A 30 630 17 HOH HOH . I 8 HOH A 31 631 11 HOH HOH . I 8 HOH A 32 632 15 HOH HOH . I 8 HOH A 33 633 12 HOH HOH . I 8 HOH A 34 634 70 HOH HOH . I 8 HOH A 35 635 81 HOH HOH . I 8 HOH A 36 636 16 HOH HOH . I 8 HOH A 37 637 65 HOH HOH . I 8 HOH A 38 638 33 HOH HOH . I 8 HOH A 39 639 9 HOH HOH . I 8 HOH A 40 640 13 HOH HOH . I 8 HOH A 41 641 74 HOH HOH . I 8 HOH A 42 642 69 HOH HOH . I 8 HOH A 43 643 97 HOH HOH . I 8 HOH A 44 644 3 HOH HOH . I 8 HOH A 45 645 72 HOH HOH . I 8 HOH A 46 646 92 HOH HOH . I 8 HOH A 47 647 52 HOH HOH . I 8 HOH A 48 648 96 HOH HOH . I 8 HOH A 49 649 58 HOH HOH . I 8 HOH A 50 650 75 HOH HOH . I 8 HOH A 51 651 36 HOH HOH . I 8 HOH A 52 652 86 HOH HOH . I 8 HOH A 53 653 60 HOH HOH . I 8 HOH A 54 654 18 HOH HOH . I 8 HOH A 55 655 39 HOH HOH . I 8 HOH A 56 656 44 HOH HOH . I 8 HOH A 57 657 91 HOH HOH . I 8 HOH A 58 658 41 HOH HOH . I 8 HOH A 59 659 82 HOH HOH . I 8 HOH A 60 660 83 HOH HOH . I 8 HOH A 61 661 88 HOH HOH . I 8 HOH A 62 662 95 HOH HOH . I 8 HOH A 63 663 59 HOH HOH . I 8 HOH A 64 664 90 HOH HOH . I 8 HOH A 65 665 48 HOH HOH . I 8 HOH A 66 666 102 HOH HOH . I 8 HOH A 67 667 98 HOH HOH . I 8 HOH A 68 668 23 HOH HOH . I 8 HOH A 69 669 80 HOH HOH . I 8 HOH A 70 670 62 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MES . . . B 2 26.914 1.933 49.636 1 45.95 ? O1 MES 501 A 1 HETATM 2 C C2 MES . . . B 2 25.583 1.607 49.186 1 31.77 ? C2 MES 501 A 1 HETATM 3 C C3 MES . . . B 2 25.435 1.368 47.681 1 49.3 ? C3 MES 501 A 1 HETATM 4 N N4 MES . . . B 2 26.331 2.059 46.723 1 63.37 ? N4 MES 501 A 1 HETATM 5 C C5 MES . . . B 2 27.701 2.198 47.188 1 42.92 ? C5 MES 501 A 1 HETATM 6 C C6 MES . . . B 2 27.783 2.583 48.684 1 42.1 ? C6 MES 501 A 1 HETATM 7 C C7 MES . . . B 2 26.223 1.529 45.312 1 38.28 ? C7 MES 501 A 1 HETATM 8 C C8 MES . . . B 2 25.551 2.322 44.141 1 74.59 ? C8 MES 501 A 1 HETATM 9 S S MES . . . B 2 24.118 1.699 43.429 1 119.25 ? S MES 501 A 1 HETATM 10 O O1S MES . . . B 2 23.344 2.822 42.815 1 86.89 ? O1S MES 501 A 1 HETATM 11 O O2S MES . . . B 2 23.183 0.902 44.273 1 59.95 ? O2S MES 501 A 1 HETATM 12 O O3S MES . . . B 2 24.451 0.78 42.337 1 67.61 ? O3S MES 501 A 1 HETATM 13 H H21 MES . . . B 2 24.915 2.423 49.47 1 38.1 ? H21 MES 501 A 1 HETATM 14 H H22 MES . . . B 2 25.255 0.707 49.71 1 38.1 ? H22 MES 501 A 1 HETATM 15 H H31 MES . . . B 2 24.411 1.637 47.413 1 59.14 ? H31 MES 501 A 1 HETATM 16 H H32 MES . . . B 2 25.554 0.295 47.514 1 59.14 ? H32 MES 501 A 1 HETATM 17 H HN4 MES . . . B 2 25.982 3.005 46.681 1 76.02 ? HN4 MES 501 A 1 HETATM 18 H H51 MES . . . B 2 28.204 2.964 46.595 1 51.48 ? H51 MES 501 A 1 HETATM 19 H H52 MES . . . B 2 28.228 1.254 47.033 1 51.48 ? H52 MES 501 A 1 HETATM 20 H H61 MES . . . B 2 28.81 2.402 49.008 1 50.5 ? H61 MES 501 A 1 HETATM 21 H H62 MES . . . B 2 27.594 3.656 48.752 1 50.5 ? H62 MES 501 A 1 HETATM 22 H H71 MES . . . B 2 25.687 0.58 45.384 1 45.91 ? H71 MES 501 A 1 HETATM 23 H H72 MES . . . B 2 27.243 1.314 44.988 1 45.91 ? H72 MES 501 A 1 HETATM 24 H H81 MES . . . B 2 26.293 2.422 43.347 1 89.49 ? H81 MES 501 A 1 HETATM 25 H H82 MES . . . B 2 25.322 3.322 44.515 1 89.49 ? H82 MES 501 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 25 #