data_8AOP
#
_model_server_result.job_id            kzyCN8vcycGRGaP5dra1jw 
_model_server_result.datetime_utc      '2024-10-19 03:41:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8aop 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":202}' 
#
_entry.id    8AOP 
#
_exptl.entry_id    8AOP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              250.317 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (3S)-3-[(3-aminophenyl)sulfanylmethyl]piperidine-2,6-dione 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8AOP 
_cell.length_a            56.79 
_cell.length_b            59.194 
_cell.length_c            87.861 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8AOP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,K 1 1 
B,G,H,I,L 2 1 
C,J,M 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 24 A CYS 24 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc2 A SG CYS 27 A CYS 27 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc3 A SG CYS 90 A CYS 90 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc4 A SG CYS 93 A CYS 93 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc5 B SG CYS 24 B CYS 24 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? 
metalc ? metalc6 B SG CYS 27 B CYS 27 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? 
metalc ? metalc7 B SG CYS 90 B CYS 90 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? 
metalc ? metalc8 B SG CYS 93 B CYS 93 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? 
metalc ? metalc9 C SG CYS 24 C CYS 24 1_555 J ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? 
metalc ? metalc10 C SG CYS 27 C CYS 27 1_555 J ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc11 C SG CYS 90 C CYS 90 1_555 J ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? 
metalc ? metalc12 C SG CYS 93 C CYS 93 1_555 J ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? 
#
_chem_comp.formula           'C12 H14 N2 O2 S' 
_chem_comp.formula_weight    250.317 
_chem_comp.id                MW6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (3S)-3-[(3-aminophenyl)sulfanylmethyl]piperidine-2,6-dione 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N2 C11 MW6 sing 237 n n 
C11 C12 MW6 doub 238 n y 
C11 C10 MW6 sing 239 n y 
C12 C7 MW6 sing 240 n y 
C10 C9 MW6 doub 241 n y 
C7 S1 MW6 sing 242 n n 
C7 C8 MW6 doub 243 n y 
S1 C6 MW6 sing 244 n n 
C9 C8 MW6 sing 245 n y 
O1 C3 MW6 doub 246 n n 
C3 N1 MW6 sing 247 n n 
C3 C2 MW6 sing 248 n n 
N1 C4 MW6 sing 249 n n 
C6 C2 MW6 sing 250 n n 
C4 O2 MW6 doub 251 n n 
C4 C5 MW6 sing 252 n n 
C2 C1 MW6 sing 253 n n 
C1 C5 MW6 sing 254 n n 
N1 H4 MW6 sing 255 n n 
C5 H6 MW6 sing 256 n n 
C5 H5 MW6 sing 257 n n 
C6 H8 MW6 sing 258 n n 
C6 H7 MW6 sing 259 n n 
C8 H9 MW6 sing 260 n n 
C10 H11 MW6 sing 261 n n 
C1 H2 MW6 sing 262 n n 
C1 H1 MW6 sing 263 n n 
C2 H3 MW6 sing 264 n n 
C9 H10 MW6 sing 265 n n 
C12 H12 MW6 sing 266 n n 
N2 H13 MW6 sing 267 n n 
N2 H14 MW6 sing 268 n n 
#
_atom_sites.entry_id                     8AOP 
_atom_sites.fract_transf_matrix[1][1]    0.017609 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016894 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011382 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 ZN A 1 201 201 ZN ZN . 
E 3 MW6 A 1 202 202 MW6 MW6 . 
F 4 PO4 A 1 203 203 PO4 PO4 . 
G 2 ZN B 1 201 201 ZN ZN . 
H 3 MW6 B 1 202 202 MW6 MW6 . 
I 4 PO4 B 1 203 203 PO4 PO4 . 
J 2 ZN C 1 201 201 ZN ZN . 
K 5 HOH A 1 301 301 HOH HOH . 
K 5 HOH A 2 302 302 HOH HOH . 
K 5 HOH A 3 303 303 HOH HOH . 
K 5 HOH A 4 304 304 HOH HOH . 
K 5 HOH A 5 305 305 HOH HOH . 
K 5 HOH A 6 306 306 HOH HOH . 
K 5 HOH A 7 307 307 HOH HOH . 
K 5 HOH A 8 308 308 HOH HOH . 
K 5 HOH A 9 309 309 HOH HOH . 
K 5 HOH A 10 310 310 HOH HOH . 
K 5 HOH A 11 311 311 HOH HOH . 
K 5 HOH A 12 312 312 HOH HOH . 
K 5 HOH A 13 313 313 HOH HOH . 
K 5 HOH A 14 314 314 HOH HOH . 
K 5 HOH A 15 315 315 HOH HOH . 
K 5 HOH A 16 316 316 HOH HOH . 
K 5 HOH A 17 317 317 HOH HOH . 
K 5 HOH A 18 318 318 HOH HOH . 
K 5 HOH A 19 319 319 HOH HOH . 
K 5 HOH A 20 320 320 HOH HOH . 
K 5 HOH A 21 321 321 HOH HOH . 
K 5 HOH A 22 322 322 HOH HOH . 
K 5 HOH A 23 323 323 HOH HOH . 
K 5 HOH A 24 324 324 HOH HOH . 
K 5 HOH A 25 325 325 HOH HOH . 
K 5 HOH A 26 326 326 HOH HOH . 
K 5 HOH A 27 327 327 HOH HOH . 
L 5 HOH B 1 301 301 HOH HOH . 
L 5 HOH B 2 302 302 HOH HOH . 
L 5 HOH B 3 303 303 HOH HOH . 
L 5 HOH B 4 304 304 HOH HOH . 
L 5 HOH B 5 305 305 HOH HOH . 
L 5 HOH B 6 306 306 HOH HOH . 
L 5 HOH B 7 307 307 HOH HOH . 
L 5 HOH B 8 308 308 HOH HOH . 
L 5 HOH B 9 309 309 HOH HOH . 
L 5 HOH B 10 310 310 HOH HOH . 
L 5 HOH B 11 311 311 HOH HOH . 
L 5 HOH B 12 312 312 HOH HOH . 
L 5 HOH B 13 313 313 HOH HOH . 
L 5 HOH B 14 314 314 HOH HOH . 
L 5 HOH B 15 315 315 HOH HOH . 
L 5 HOH B 16 316 316 HOH HOH . 
L 5 HOH B 17 317 317 HOH HOH . 
L 5 HOH B 18 318 318 HOH HOH . 
L 5 HOH B 19 319 319 HOH HOH . 
L 5 HOH B 20 320 320 HOH HOH . 
L 5 HOH B 21 321 321 HOH HOH . 
L 5 HOH B 22 322 322 HOH HOH . 
L 5 HOH B 23 323 323 HOH HOH . 
L 5 HOH B 24 324 324 HOH HOH . 
L 5 HOH B 25 325 325 HOH HOH . 
L 5 HOH B 26 326 326 HOH HOH . 
L 5 HOH B 27 327 327 HOH HOH . 
L 5 HOH B 28 328 328 HOH HOH . 
L 5 HOH B 29 329 329 HOH HOH . 
M 5 HOH C 1 301 301 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 MW6 . . . E 3 23.835 15.709 -7.982 1 46.45 0 N1 MW6 202 A 1 
HETATM 2 C C4 MW6 . . . E 3 22.679 16.144 -7.364 1 45.1 0 C4 MW6 202 A 1 
HETATM 3 C C5 MW6 . . . E 3 22.75 17.457 -6.652 1 45.73 0 C5 MW6 202 A 1 
HETATM 4 C C6 MW6 . . . E 3 26.286 18.558 -7.713 1 55.51 0 C6 MW6 202 A 1 
HETATM 5 C C7 MW6 . . . E 3 28.041 19.47 -9.627 1 69.56 0 C7 MW6 202 A 1 
HETATM 6 C C8 MW6 . . . E 3 28.823 19.684 -8.489 1 71.02 0 C8 MW6 202 A 1 
HETATM 7 C C10 MW6 . . . E 3 30.723 20.177 -9.875 1 77.29 0 C10 MW6 202 A 1 
HETATM 8 C C1 MW6 . . . E 3 23.819 18.383 -7.199 1 48.32 0 C1 MW6 202 A 1 
HETATM 9 C C2 MW6 . . . E 3 25.155 17.662 -7.235 1 50.09 0 C2 MW6 202 A 1 
HETATM 10 C C3 MW6 . . . E 3 25.053 16.363 -7.997 1 48.67 0 C3 MW6 202 A 1 
HETATM 11 S S1 MW6 . . . E 3 26.344 19 -9.471 1 66.16 0 S1 MW6 202 A 1 
HETATM 12 O O1 MW6 . . . E 3 26.005 15.881 -8.57 1 49.29 0 O1 MW6 202 A 1 
HETATM 13 O O2 MW6 . . . E 3 21.67 15.465 -7.36 1 42.31 0 O2 MW6 202 A 1 
HETATM 14 C C9 MW6 . . . E 3 30.156 20.035 -8.619 1 73.89 0 C9 MW6 202 A 1 
HETATM 15 C C11 MW6 . . . E 3 29.965 19.967 -11.03 1 78.61 0 C11 MW6 202 A 1 
HETATM 16 C C12 MW6 . . . E 3 28.617 19.61 -10.895 1 74.74 0 C12 MW6 202 A 1 
HETATM 17 N N2 MW6 . . . E 3 30.535 20.116 -12.27 1 83.84 0 N2 MW6 202 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           41 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           338 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           17 
#