data_8AP9
#
_model_server_result.job_id            GaqYsW5WC6yPKYWAeXE8Nw 
_model_server_result.datetime_utc      '2024-11-27 11:15:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ap9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":201}' 
#
_entry.id    8AP9 
#
_exptl.entry_id    8AP9 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              484.141 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "URIDINE 5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8AP9 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8AP9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tridecameric 
_pdbx_struct_assembly.oligomeric_count      13 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             N 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C9 H15 N2 O15 P3' 
_chem_comp.formula_weight    484.141 
_chem_comp.id                UTP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "URIDINE 5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A UTP doub 356 n n 
PA O2A UTP sing 357 n n 
PA O3A UTP sing 358 n n 
PA O5' UTP sing 359 n n 
O2A H2A UTP sing 360 n n 
O3A PB UTP sing 361 n n 
O5' C5' UTP sing 362 n n 
PB O1B UTP sing 363 n n 
PB O2B UTP doub 364 n n 
PB O3B UTP sing 365 n n 
O1B H1B UTP sing 366 n n 
O3B PG UTP sing 367 n n 
PG O1G UTP sing 368 n n 
PG O2G UTP doub 369 n n 
PG O3G UTP sing 370 n n 
O1G H1G UTP sing 371 n n 
O3G H3G UTP sing 372 n n 
C5' C4' UTP sing 373 n n 
C5' "H5'1" UTP sing 374 n n 
C5' "H5'2" UTP sing 375 n n 
C4' O4' UTP sing 376 n n 
C4' C3' UTP sing 377 n n 
C4' H4' UTP sing 378 n n 
O4' C1' UTP sing 379 n n 
C1' C2' UTP sing 380 n n 
C1' N1 UTP sing 381 n n 
C1' H1' UTP sing 382 n n 
C2' O2' UTP sing 383 n n 
C2' C3' UTP sing 384 n n 
C2' H2' UTP sing 385 n n 
O2' HA UTP sing 386 n n 
C3' O3' UTP sing 387 n n 
C3' H3' UTP sing 388 n n 
O3' HB UTP sing 389 n n 
N1 C6 UTP sing 390 n y 
N1 C2 UTP sing 391 n y 
C6 C5 UTP doub 392 n y 
C6 H6 UTP sing 393 n n 
C2 O2 UTP doub 394 n n 
C2 N3 UTP sing 395 n y 
N3 C4 UTP sing 396 n y 
N3 H3 UTP sing 397 n n 
C4 O4 UTP doub 398 n n 
C4 C5 UTP sing 399 n y 
C5 H5 UTP sing 400 n n 
#
_atom_sites.entry_id                     8AP9 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          N 
_pdbx_nonpoly_scheme.entity_id        5 
_pdbx_nonpoly_scheme.mon_id           UTP 
_pdbx_nonpoly_scheme.pdb_strand_id    H 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      201 
_pdbx_nonpoly_scheme.auth_seq_num     1 
_pdbx_nonpoly_scheme.pdb_mon_id       UTP 
_pdbx_nonpoly_scheme.auth_mon_id      UTP 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA UTP . . . N 5 306.824 212.901 198.197 1 58.25 ? PA UTP 201 H 1 
HETATM 2 O O1A UTP . . . N 5 305.839 213.327 197.183 1 58.25 ? O1A UTP 201 H 1 
HETATM 3 O O2A UTP . . . N 5 308.245 213.41 197.969 1 58.25 ? O2A UTP 201 H 1 
HETATM 4 O O3A UTP . . . N 5 306.909 211.315 198.289 1 58.25 ? O3A UTP 201 H 1 
HETATM 5 O O5' UTP . . . N 5 306.393 213.383 199.665 1 58.25 ? O5' UTP 201 H 1 
HETATM 6 P PB UTP . . . N 5 305.84 210.152 198.088 1 58.25 ? PB UTP 201 H 1 
HETATM 7 O O1B UTP . . . N 5 306.591 208.829 198.183 1 58.25 ? O1B UTP 201 H 1 
HETATM 8 O O2B UTP . . . N 5 305.03 210.353 196.871 1 58.25 ? O2B UTP 201 H 1 
HETATM 9 O O3B UTP . . . N 5 304.96 210.284 199.407 1 58.25 ? O3B UTP 201 H 1 
HETATM 10 P PG UTP . . . N 5 304.496 209.222 200.504 1 58.25 ? PG UTP 201 H 1 
HETATM 11 O O1G UTP . . . N 5 303.762 210.053 201.558 1 58.25 ? O1G UTP 201 H 1 
HETATM 12 O O2G UTP . . . N 5 303.654 208.156 199.896 1 58.25 ? O2G UTP 201 H 1 
HETATM 13 O O3G UTP . . . N 5 305.802 208.698 201.107 1 58.25 ? O3G UTP 201 H 1 
HETATM 14 C C5' UTP . . . N 5 305.679 214.601 199.961 1 58.25 ? C5' UTP 201 H 1 
HETATM 15 C C4' UTP . . . N 5 305.128 214.508 201.362 1 58.25 ? C4' UTP 201 H 1 
HETATM 16 O O4' UTP . . . N 5 304.3 215.661 201.639 1 58.25 ? O4' UTP 201 H 1 
HETATM 17 C C1' UTP . . . N 5 303.062 215.233 202.169 1 58.25 ? C1' UTP 201 H 1 
HETATM 18 C C2' UTP . . . N 5 302.841 213.832 201.611 1 58.25 ? C2' UTP 201 H 1 
HETATM 19 O O2' UTP . . . N 5 301.961 213.089 202.449 1 58.25 ? O2' UTP 201 H 1 
HETATM 20 C C3' UTP . . . N 5 304.266 213.274 201.641 1 58.25 ? C3' UTP 201 H 1 
HETATM 21 O O3' UTP . . . N 5 304.582 212.708 202.909 1 58.25 ? O3' UTP 201 H 1 
HETATM 22 N N1 UTP . . . N 5 302.023 216.196 201.773 1 58.25 ? N1 UTP 201 H 1 
HETATM 23 C C6 UTP . . . N 5 302.131 216.915 200.603 1 58.25 ? C6 UTP 201 H 1 
HETATM 24 C C2 UTP . . . N 5 300.941 216.354 202.615 1 58.25 ? C2 UTP 201 H 1 
HETATM 25 O O2 UTP . . . N 5 300.814 215.728 203.657 1 58.25 ? O2 UTP 201 H 1 
HETATM 26 N N3 UTP . . . N 5 300.008 217.271 202.197 1 58.25 ? N3 UTP 201 H 1 
HETATM 27 C C4 UTP . . . N 5 300.048 218.027 201.044 1 58.25 ? C4 UTP 201 H 1 
HETATM 28 O O4 UTP . . . N 5 299.13 218.823 200.8 1 58.25 ? O4 UTP 201 H 1 
HETATM 29 C C5 UTP . . . N 5 301.198 217.805 200.219 1 58.25 ? C5 UTP 201 H 1 
HETATM 30 H "H5'1" UTP . . . N 5 306.34 215.462 199.884 1 58.25 ? "H5'1" UTP 201 H 1 
HETATM 31 H "H5'2" UTP . . . N 5 304.916 214.699 199.191 1 58.25 ? "H5'2" UTP 201 H 1 
HETATM 32 H H4' UTP . . . N 5 305.94 214.594 202.08 1 58.25 ? H4' UTP 201 H 1 
HETATM 33 H H1' UTP . . . N 5 303.158 215.251 203.253 1 58.25 ? H1' UTP 201 H 1 
HETATM 34 H H2' UTP . . . N 5 302.387 213.769 200.624 1 58.25 ? H2' UTP 201 H 1 
HETATM 35 H HA UTP . . . N 5 301.136 212.859 201.948 1 58.25 ? HA UTP 201 H 1 
HETATM 36 H H3' UTP . . . N 5 304.384 212.517 200.869 1 58.25 ? H3' UTP 201 H 1 
HETATM 37 H HB UTP . . . N 5 303.827 212.939 203.51 1 58.25 ? HB UTP 201 H 1 
HETATM 38 H H6 UTP . . . N 5 303.012 216.734 199.992 1 58.25 ? H6 UTP 201 H 1 
HETATM 39 H H3 UTP . . . N 5 299.207 217.399 202.807 1 58.25 ? H3 UTP 201 H 1 
HETATM 40 H H5 UTP . . . N 5 301.279 218.371 199.293 1 58.25 ? H5 UTP 201 H 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           40 
#