data_8APA # _model_server_result.job_id aeiZX4JGJ-gHIEzYEqlUuw _model_server_result.datetime_utc '2024-12-18 20:04:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8apa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"SB","auth_seq_id":203}' # _entry.id 8APA # _exptl.entry_id 8APA _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 510.615 _entity.id 32 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8APA _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8APA _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 42-meric _pdbx_struct_assembly.oligomeric_count 42 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 32 JB N N ? 32 SB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 CA C AME 1 e AME 1 1_555 CA N GLN 2 e GLN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? metalc ? metalc1 A OG1 THR 213 A1 THR 213 1_555 RA MG MG . A1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc2 QA O2G ATP . A1 ATP 601 1_555 RA MG MG . A1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? metalc ? metalc3 QA O2B ATP . A1 ATP 601 1_555 RA MG MG . A1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc4 B OG1 THR 213 B1 THR 213 1_555 TA MG MG . B1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc5 SA O2G ATP . B1 ATP 601 1_555 TA MG MG . B1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? metalc ? metalc6 SA O2B ATP . B1 ATP 601 1_555 TA MG MG . B1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? metalc ? metalc7 C OG1 THR 213 C1 THR 213 1_555 VA MG MG . C1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? metalc ? metalc8 UA O2G ATP . C1 ATP 601 1_555 VA MG MG . C1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? metalc ? metalc9 UA O2B ATP . C1 ATP 601 1_555 VA MG MG . C1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.937 ? metalc ? metalc10 D OG1 THR 190 D1 THR 190 1_555 XA MG MG . D1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? metalc ? metalc11 WA O3B ADP . D1 ADP 601 1_555 XA MG MG . D1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.904 ? metalc ? metalc12 F OG1 THR 190 F1 THR 190 1_555 ZA MG MG . F1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? metalc ? metalc13 YA O2G ATP . F1 ATP 601 1_555 ZA MG MG . F1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.895 ? metalc ? metalc14 YA O2B ATP . F1 ATP 601 1_555 ZA MG MG . F1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8APA _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code QA 26 ATP A1 1 601 1 ATP ATP . RA 27 MG A1 1 602 2 MG MG . SA 26 ATP B1 1 601 3 ATP ATP . TA 27 MG B1 1 602 4 MG MG . UA 26 ATP C1 1 601 5 ATP ATP . VA 27 MG C1 1 602 6 MG MG . WA 28 ADP D1 1 601 1 ADP ADP . XA 27 MG D1 1 602 2 MG MG . YA 26 ATP F1 1 601 7 ATP ATP . ZA 27 MG F1 1 602 8 MG MG . AB 29 UTP H1 1 201 1 UTP UTP . BB 30 CDL L 1 101 12 CDL CDL . CB 31 PEE M 1 201 2 PEE PEE . DB 30 CDL c 1 201 3 CDL CDL . EB 30 CDL e 1 401 2 CDL CDL . FB 30 CDL e 1 402 5 CDL CDL . GB 30 CDL e 1 403 7 CDL CDL . HB 30 CDL e 1 404 10 CDL CDL . IB 30 CDL e 1 405 11 CDL CDL . JB 32 LMT e 1 406 1 LMT LMT . KB 33 Q7G e 1 407 2 Q7G GD0 . LB 30 CDL f 1 201 9 CDL CDL . MB 31 PEE f 1 202 1 PEE PEE . NB 34 PC1 f 1 203 1 PC1 PC1 . OB 34 PC1 f 1 204 2 PC1 PC1 . PB 34 PC1 i 1 201 4 PC1 PC1 . QB 30 CDL j 1 201 4 CDL CDL . RB 34 PC1 j 1 202 3 PC1 PC1 . SB 32 LMT j 1 203 2 LMT LMT . TB 30 CDL l 1 101 12 CDL CDL . UB 30 CDL m 1 201 1 CDL CDL . VB 31 PEE m 1 202 2 PEE PEE . WB 33 Q7G n 1 201 1 Q7G GD0 . XB 30 CDL p 1 201 1 CDL CDL . YB 30 CDL q 1 101 6 CDL CDL . ZB 30 CDL q 1 102 8 CDL CDL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B LMT . . . SB 32 312.203 274.387 150.983 1 38.1 ? C1B LMT 203 j 1 HETATM 2 C C2B LMT . . . SB 32 310.695 274.262 151.155 1 38.1 ? C2B LMT 203 j 1 HETATM 3 C C3B LMT . . . SB 32 310.371 273.227 152.224 1 38.1 ? C3B LMT 203 j 1 HETATM 4 C C4B LMT . . . SB 32 311.075 271.914 151.92 1 38.1 ? C4B LMT 203 j 1 HETATM 5 C C5B LMT . . . SB 32 312.571 272.163 151.76 1 38.1 ? C5B LMT 203 j 1 HETATM 6 C C6B LMT . . . SB 32 313.338 270.919 151.379 1 38.1 ? C6B LMT 203 j 1 HETATM 7 O O1B LMT . . . SB 32 312.743 274.925 152.166 1 38.1 ? O1B LMT 203 j 1 HETATM 8 O O2B LMT . . . SB 32 310.147 275.524 151.521 1 38.1 ? O2B LMT 203 j 1 HETATM 9 O O3B LMT . . . SB 32 308.964 273.02 152.288 1 38.1 ? O3B LMT 203 j 1 HETATM 10 O O4' LMT . . . SB 32 310.865 270.986 152.98 1 38.1 ? O4' LMT 203 j 1 HETATM 11 O O5B LMT . . . SB 32 312.784 273.124 150.714 1 38.1 ? O5B LMT 203 j 1 HETATM 12 O O6B LMT . . . SB 32 313.185 269.898 152.355 1 38.1 ? O6B LMT 203 j 1 HETATM 13 C C1' LMT . . . SB 32 315.597 277.751 153.242 1 38.1 ? C1' LMT 203 j 1 HETATM 14 C C2' LMT . . . SB 32 314.31 278.289 152.629 1 38.1 ? C2' LMT 203 j 1 HETATM 15 C C3' LMT . . . SB 32 313.225 277.222 152.671 1 38.1 ? C3' LMT 203 j 1 HETATM 16 C C4' LMT . . . SB 32 313.739 275.949 152.023 1 38.1 ? C4' LMT 203 j 1 HETATM 17 C C5' LMT . . . SB 32 315.029 275.503 152.695 1 38.1 ? C5' LMT 203 j 1 HETATM 18 C C6' LMT . . . SB 32 315.644 274.279 152.061 1 38.1 ? C6' LMT 203 j 1 HETATM 19 O O1' LMT . . . SB 32 316.592 278.72 153.075 1 38.1 ? O1' LMT 203 j 1 HETATM 20 O O2' LMT . . . SB 32 313.879 279.442 153.344 1 38.1 ? O2' LMT 203 j 1 HETATM 21 O O3' LMT . . . SB 32 312.06 277.685 151.997 1 38.1 ? O3' LMT 203 j 1 HETATM 22 O O5' LMT . . . SB 32 315.997 276.558 152.591 1 38.1 ? O5' LMT 203 j 1 HETATM 23 O O6' LMT . . . SB 32 316.821 273.875 152.746 1 38.1 ? O6' LMT 203 j 1 HETATM 24 C C1 LMT . . . SB 32 316.689 279.657 154.15 1 38.1 ? C1 LMT 203 j 1 HETATM 25 C C2 LMT . . . SB 32 318.045 279.513 154.794 1 38.1 ? C2 LMT 203 j 1 HETATM 26 C C3 LMT . . . SB 32 318.3 280.509 155.911 1 38.1 ? C3 LMT 203 j 1 HETATM 27 C C4 LMT . . . SB 32 318.158 281.96 155.483 1 38.1 ? C4 LMT 203 j 1 HETATM 28 C C5 LMT . . . SB 32 319.079 282.919 156.222 1 38.1 ? C5 LMT 203 j 1 HETATM 29 C C6 LMT . . . SB 32 318.791 283.061 157.709 1 38.1 ? C6 LMT 203 j 1 HETATM 30 C C7 LMT . . . SB 32 317.471 283.743 158.024 1 38.1 ? C7 LMT 203 j 1 HETATM 31 C C8 LMT . . . SB 32 317.401 284.333 159.424 1 38.1 ? C8 LMT 203 j 1 HETATM 32 C C9 LMT . . . SB 32 317.647 283.33 160.536 1 38.1 ? C9 LMT 203 j 1 HETATM 33 C C10 LMT . . . SB 32 317.625 283.937 161.926 1 38.1 ? C10 LMT 203 j 1 HETATM 34 C C11 LMT . . . SB 32 318.079 282.986 163.016 1 38.1 ? C11 LMT 203 j 1 HETATM 35 C C12 LMT . . . SB 32 318.178 283.642 164.367 1 38.1 ? C12 LMT 203 j 1 HETATM 36 H H1B LMT . . . SB 32 312.454 274.934 150.077 1 38.1 ? H1B LMT 203 j 1 HETATM 37 H H2B LMT . . . SB 32 310.249 273.967 150.208 1 38.1 ? H2B LMT 203 j 1 HETATM 38 H H3B LMT . . . SB 32 310.717 273.588 153.19 1 38.1 ? H3B LMT 203 j 1 HETATM 39 H H4B LMT . . . SB 32 310.679 271.496 150.997 1 38.1 ? H4B LMT 203 j 1 HETATM 40 H H5B LMT . . . SB 32 312.969 272.534 152.702 1 38.1 ? H5B LMT 203 j 1 HETATM 41 H "H6'2" LMT . . . SB 32 312.936 270.479 150.467 1 38.1 ? "H6'2" LMT 203 j 1 HETATM 42 H "H6'1" LMT . . . SB 32 314.388 271.134 151.191 1 38.1 ? "H6'1" LMT 203 j 1 HETATM 43 H H1' LMT . . . SB 32 315.451 277.544 154.3 1 38.1 ? H1' LMT 203 j 1 HETATM 44 H H2' LMT . . . SB 32 314.485 278.558 151.59 1 38.1 ? H2' LMT 203 j 1 HETATM 45 H H3' LMT . . . SB 32 312.964 277.012 153.706 1 38.1 ? H3' LMT 203 j 1 HETATM 46 H H4' LMT . . . SB 32 313.949 276.146 150.975 1 38.1 ? H4' LMT 203 j 1 HETATM 47 H H5' LMT . . . SB 32 314.839 275.294 153.746 1 38.1 ? H5' LMT 203 j 1 HETATM 48 H H6D LMT . . . SB 32 315.979 274.501 151.049 1 38.1 ? H6D LMT 203 j 1 HETATM 49 H H6E LMT . . . SB 32 314.93 273.462 151.985 1 38.1 ? H6E LMT 203 j 1 HETATM 50 H H12 LMT . . . SB 32 315.91 279.506 154.894 1 38.1 ? H12 LMT 203 j 1 HETATM 51 H H11 LMT . . . SB 32 316.548 280.666 153.765 1 38.1 ? H11 LMT 203 j 1 HETATM 52 H H22 LMT . . . SB 32 318.823 279.604 154.038 1 38.1 ? H22 LMT 203 j 1 HETATM 53 H H21 LMT . . . SB 32 318.166 278.499 155.172 1 38.1 ? H21 LMT 203 j 1 HETATM 54 H H32 LMT . . . SB 32 319.293 280.345 156.327 1 38.1 ? H32 LMT 203 j 1 HETATM 55 H H31 LMT . . . SB 32 317.623 280.306 156.739 1 38.1 ? H31 LMT 203 j 1 HETATM 56 H H42 LMT . . . SB 32 318.331 282.04 154.411 1 38.1 ? H42 LMT 203 j 1 HETATM 57 H H41 LMT . . . SB 32 317.125 282.277 155.611 1 38.1 ? H41 LMT 203 j 1 HETATM 58 H H52 LMT . . . SB 32 319.031 283.9 155.752 1 38.1 ? H52 LMT 203 j 1 HETATM 59 H H51 LMT . . . SB 32 320.112 282.606 156.082 1 38.1 ? H51 LMT 203 j 1 HETATM 60 H H62 LMT . . . SB 32 319.605 283.603 158.188 1 38.1 ? H62 LMT 203 j 1 HETATM 61 H H61 LMT . . . SB 32 318.815 282.079 158.178 1 38.1 ? H61 LMT 203 j 1 HETATM 62 H H72 LMT . . . SB 32 317.28 284.524 157.289 1 38.1 ? H72 LMT 203 j 1 HETATM 63 H H71 LMT . . . SB 32 316.653 283.039 157.885 1 38.1 ? H71 LMT 203 j 1 HETATM 64 H H82 LMT . . . SB 32 318.117 285.148 159.508 1 38.1 ? H82 LMT 203 j 1 HETATM 65 H H81 LMT . . . SB 32 316.434 284.812 159.571 1 38.1 ? H81 LMT 203 j 1 HETATM 66 H H92 LMT . . . SB 32 318.599 282.826 160.378 1 38.1 ? H92 LMT 203 j 1 HETATM 67 H H91 LMT . . . SB 32 316.906 282.535 160.476 1 38.1 ? H91 LMT 203 j 1 HETATM 68 H H102 LMT . . . SB 32 316.62 284.29 162.149 1 38.1 ? H102 LMT 203 j 1 HETATM 69 H H101 LMT . . . SB 32 318.237 284.837 161.945 1 38.1 ? H101 LMT 203 j 1 HETATM 70 H H112 LMT . . . SB 32 319.04 282.549 162.752 1 38.1 ? H112 LMT 203 j 1 HETATM 71 H H111 LMT . . . SB 32 317.4 282.138 163.072 1 38.1 ? H111 LMT 203 j 1 HETATM 72 H H123 LMT . . . SB 32 318.515 282.941 165.13 1 38.1 ? H123 LMT 203 j 1 HETATM 73 H H122 LMT . . . SB 32 317.224 284.041 164.705 1 38.1 ? H122 LMT 203 j 1 HETATM 74 H H121 LMT . . . SB 32 318.882 284.472 164.371 1 38.1 ? H121 LMT 203 j 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 444 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 74 #