data_8APE # _model_server_result.job_id kf5Y6szKUPilZsf74KlfxQ _model_server_result.datetime_utc '2024-11-15 06:00:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ape # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"SA","auth_seq_id":601}' # _entry.id 8APE # _exptl.entry_id 8APE _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 26 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8APE _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8APE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 42-meric _pdbx_struct_assembly.oligomeric_count 42 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 26 QA N N ? 26 SA N N ? 26 UA N N ? 26 YA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 CA C AME 1 e AME 1 1_555 CA N GLN 2 e GLN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 A OG1 THR 213 A1 THR 213 1_555 RA MG MG . A1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc2 QA O2G ATP . A1 ATP 601 1_555 RA MG MG . A1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? metalc ? metalc3 QA O2B ATP . A1 ATP 601 1_555 RA MG MG . A1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc4 B OG1 THR 213 B1 THR 213 1_555 TA MG MG . B1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc5 SA O2G ATP . B1 ATP 601 1_555 TA MG MG . B1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? metalc ? metalc6 SA O2B ATP . B1 ATP 601 1_555 TA MG MG . B1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc7 C OG1 THR 213 C1 THR 213 1_555 VA MG MG . C1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.917 ? metalc ? metalc8 UA O2G ATP . C1 ATP 601 1_555 VA MG MG . C1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.903 ? metalc ? metalc9 UA O2B ATP . C1 ATP 601 1_555 VA MG MG . C1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? metalc ? metalc10 D OG1 THR 190 D1 THR 190 1_555 XA MG MG . D1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc11 WA O3B ADP . D1 ADP 601 1_555 XA MG MG . D1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc12 F OG1 THR 190 F1 THR 190 1_555 ZA MG MG . F1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? metalc ? metalc13 YA O2G ATP . F1 ATP 601 1_555 ZA MG MG . F1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? metalc ? metalc14 YA O2B ATP . F1 ATP 601 1_555 ZA MG MG . F1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8APE _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code QA 26 ATP A1 1 601 1 ATP ATP . RA 27 MG A1 1 602 2 MG MG . SA 26 ATP B1 1 601 3 ATP ATP . TA 27 MG B1 1 602 4 MG MG . UA 26 ATP C1 1 601 5 ATP ATP . VA 27 MG C1 1 602 6 MG MG . WA 28 ADP D1 1 601 1 ADP ADP . XA 27 MG D1 1 602 2 MG MG . YA 26 ATP F1 1 601 7 ATP ATP . ZA 27 MG F1 1 602 8 MG MG . AB 29 UTP H1 1 201 1 UTP UTP . BB 30 CDL L 1 101 12 CDL CDL . CB 30 CDL M 1 201 1 CDL CDL . DB 31 PEE M 1 202 2 PEE PEE . EB 32 PC1 a 1 301 3 PC1 PC1 . FB 30 CDL c 1 201 3 CDL CDL . GB 30 CDL e 1 401 2 CDL CDL . HB 30 CDL e 1 402 5 CDL CDL . IB 30 CDL e 1 403 7 CDL CDL . JB 30 CDL e 1 404 10 CDL CDL . KB 30 CDL e 1 405 11 CDL CDL . LB 33 LMT e 1 406 1 LMT LMT . MB 34 Q7G e 1 407 2 Q7G GD0 . NB 30 CDL f 1 201 9 CDL CDL . OB 31 PEE f 1 202 1 PEE PEE . PB 32 PC1 f 1 203 1 PC1 PC1 . QB 32 PC1 f 1 204 2 PC1 PC1 . RB 32 PC1 i 1 201 4 PC1 PC1 . SB 30 CDL j 1 201 4 CDL CDL . TB 30 CDL j 1 202 6 CDL CDL . UB 33 LMT j 1 203 2 LMT LMT . VB 30 CDL l 1 101 12 CDL CDL . WB 30 CDL m 1 201 1 CDL CDL . XB 31 PEE m 1 202 2 PEE PEE . YB 34 Q7G n 1 201 1 Q7G GD0 . ZB 30 CDL q 1 101 8 CDL CDL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . SA 26 371.153 199.736 262.116 1 92.63 ? PG ATP 601 B1 1 HETATM 2 O O1G ATP . . . SA 26 370.118 199.896 263.176 1 92.63 ? O1G ATP 601 B1 1 HETATM 3 O O2G ATP . . . SA 26 372.551 200.186 262.553 1 92.63 ? O2G ATP 601 B1 1 HETATM 4 O O3G ATP . . . SA 26 371.24 198.313 261.556 1 92.63 ? O3G ATP 601 B1 1 HETATM 5 P PB ATP . . . SA 26 371.462 201.986 260.278 1 92.63 ? PB ATP 601 B1 1 HETATM 6 O O1B ATP . . . SA 26 370.562 203.145 260.441 1 92.63 ? O1B ATP 601 B1 1 HETATM 7 O O2B ATP . . . SA 26 372.847 202.121 260.906 1 92.63 ? O2B ATP 601 B1 1 HETATM 8 O O3B ATP . . . SA 26 370.818 200.646 260.848 1 92.63 ? O3B ATP 601 B1 1 HETATM 9 P PA ATP . . . SA 26 372.975 201.426 257.846 1 92.63 ? PA ATP 601 B1 1 HETATM 10 O O1A ATP . . . SA 26 373.811 200.312 258.338 1 92.63 ? O1A ATP 601 B1 1 HETATM 11 O O2A ATP . . . SA 26 373.674 202.783 257.782 1 92.63 ? O2A ATP 601 B1 1 HETATM 12 O O3A ATP . . . SA 26 371.675 201.614 258.745 1 92.63 ? O3A ATP 601 B1 1 HETATM 13 O O5' ATP . . . SA 26 372.4 201.124 256.37 1 92.63 ? O5' ATP 601 B1 1 HETATM 14 C C5' ATP . . . SA 26 371.415 200.093 256.152 1 92.63 ? C5' ATP 601 B1 1 HETATM 15 C C4' ATP . . . SA 26 371.619 199.495 254.782 1 92.63 ? C4' ATP 601 B1 1 HETATM 16 O O4' ATP . . . SA 26 371.357 200.495 253.771 1 92.63 ? O4' ATP 601 B1 1 HETATM 17 C C3' ATP . . . SA 26 373.029 198.975 254.503 1 92.63 ? C3' ATP 601 B1 1 HETATM 18 O O3' ATP . . . SA 26 372.995 197.812 253.682 1 92.63 ? O3' ATP 601 B1 1 HETATM 19 C C2' ATP . . . SA 26 373.688 200.157 253.791 1 92.63 ? C2' ATP 601 B1 1 HETATM 20 O O2' ATP . . . SA 26 374.735 199.734 252.925 1 92.63 ? O2' ATP 601 B1 1 HETATM 21 C C1' ATP . . . SA 26 372.514 200.707 252.984 1 92.63 ? C1' ATP 601 B1 1 HETATM 22 N N9 ATP . . . SA 26 372.609 202.131 252.682 1 92.63 ? N9 ATP 601 B1 1 HETATM 23 C C8 ATP . . . SA 26 372.726 203.161 253.578 1 92.63 ? C8 ATP 601 B1 1 HETATM 24 N N7 ATP . . . SA 26 372.78 204.348 253.024 1 92.63 ? N7 ATP 601 B1 1 HETATM 25 C C5 ATP . . . SA 26 372.694 204.082 251.666 1 92.63 ? C5 ATP 601 B1 1 HETATM 26 C C6 ATP . . . SA 26 372.695 204.917 250.532 1 92.63 ? C6 ATP 601 B1 1 HETATM 27 N N6 ATP . . . SA 26 372.785 206.249 250.588 1 92.63 ? N6 ATP 601 B1 1 HETATM 28 N N1 ATP . . . SA 26 372.598 204.329 249.32 1 92.63 ? N1 ATP 601 B1 1 HETATM 29 C C2 ATP . . . SA 26 372.505 202.998 249.257 1 92.63 ? C2 ATP 601 B1 1 HETATM 30 N N3 ATP . . . SA 26 372.491 202.111 250.254 1 92.63 ? N3 ATP 601 B1 1 HETATM 31 C C4 ATP . . . SA 26 372.589 202.719 251.44 1 92.63 ? C4 ATP 601 B1 1 HETATM 32 H "H5'1" ATP . . . SA 26 370.403 200.487 256.237 1 92.63 ? "H5'1" ATP 601 B1 1 HETATM 33 H "H5'2" ATP . . . SA 26 371.551 199.356 256.94 1 92.63 ? "H5'2" ATP 601 B1 1 HETATM 34 H H4' ATP . . . SA 26 370.874 198.725 254.59 1 92.63 ? H4' ATP 601 B1 1 HETATM 35 H H3' ATP . . . SA 26 373.557 198.637 255.393 1 92.63 ? H3' ATP 601 B1 1 HETATM 36 H HO3' ATP . . . SA 26 373.914 197.453 253.573 1 92.63 ? HO3' ATP 601 B1 1 HETATM 37 H H2' ATP . . . SA 26 374.065 200.871 254.522 1 92.63 ? H2' ATP 601 B1 1 HETATM 38 H HO2' ATP . . . SA 26 375.253 199.06 253.439 1 92.63 ? HO2' ATP 601 B1 1 HETATM 39 H H1' ATP . . . SA 26 372.381 200.187 252.036 1 92.63 ? H1' ATP 601 B1 1 HETATM 40 H H8 ATP . . . SA 26 372.771 202.995 254.653 1 92.63 ? H8 ATP 601 B1 1 HETATM 41 H HN61 ATP . . . SA 26 372.907 206.73 251.473 1 92.63 ? HN61 ATP 601 B1 1 HETATM 42 H HN62 ATP . . . SA 26 372.731 206.803 249.739 1 92.63 ? HN62 ATP 601 B1 1 HETATM 43 H H2 ATP . . . SA 26 372.434 202.6 248.246 1 92.63 ? H2 ATP 601 B1 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 247 _model_server_stats.query_time_ms 488 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #