data_8APF # _model_server_result.job_id N-DvLqr-eTkU1BL6qGMe7A _model_server_result.datetime_utc '2024-11-15 07:38:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8apf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"HB","auth_seq_id":203}' # _entry.id 8APF # _exptl.entry_id 8APF _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 510.615 _entity.id 28 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8APF _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8APF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 42-meric _pdbx_struct_assembly.oligomeric_count 42 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 28 ZA N N ? 28 HB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 V C AME 1 e AME 1 1_555 V N GLN 2 e GLN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 KA OG1 THR 213 A1 THR 213 1_555 RB MG MG . A1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc2 QB O2G ATP . A1 ATP 601 1_555 RB MG MG . A1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? metalc ? metalc3 QB O2B ATP . A1 ATP 601 1_555 RB MG MG . A1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc4 LA OG1 THR 213 B1 THR 213 1_555 TB MG MG . B1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? metalc ? metalc5 SB O2G ATP . B1 ATP 601 1_555 TB MG MG . B1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.871 ? metalc ? metalc6 SB O2B ATP . B1 ATP 601 1_555 TB MG MG . B1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? metalc ? metalc7 MA OG1 THR 213 C1 THR 213 1_555 VB MG MG . C1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc8 UB O2G ATP . C1 ATP 601 1_555 VB MG MG . C1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? metalc ? metalc9 UB O2B ATP . C1 ATP 601 1_555 VB MG MG . C1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? metalc ? metalc10 NA OG1 THR 190 D1 THR 190 1_555 XB MG MG . D1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc11 NA OE2 GLU 215 D1 GLU 215 1_555 XB MG MG . D1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? metalc ? metalc12 WB O2G ATP . D1 ATP 601 1_555 XB MG MG . D1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc13 WB O2B ATP . D1 ATP 601 1_555 XB MG MG . D1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc14 OA OG1 THR 190 E1 THR 190 1_555 ZB MG MG . E1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? metalc ? metalc15 YB O3B ADP . E1 ADP 601 1_555 ZB MG MG . E1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8APF _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code QA 26 CDL L 1 101 12 CDL CDL . RA 26 CDL M 1 201 1 CDL CDL . SA 27 PEE M 1 202 2 PEE PEE . TA 26 CDL c 1 201 3 CDL CDL . UA 26 CDL e 1 401 2 CDL CDL . VA 26 CDL e 1 402 5 CDL CDL . WA 26 CDL e 1 403 7 CDL CDL . XA 26 CDL e 1 404 10 CDL CDL . YA 26 CDL e 1 405 11 CDL CDL . ZA 28 LMT e 1 406 1 LMT LMT . AB 29 Q7G e 1 407 2 Q7G GD0 . BB 26 CDL f 1 201 9 CDL CDL . CB 27 PEE f 1 202 1 PEE PEE . DB 30 PC1 f 1 203 2 PC1 PC1 . EB 30 PC1 i 1 201 4 PC1 PC1 . FB 26 CDL j 1 201 4 CDL CDL . GB 30 PC1 j 1 202 3 PC1 PC1 . HB 28 LMT j 1 203 2 LMT LMT . IB 26 CDL l 1 101 12 CDL CDL . JB 27 PEE m 1 201 2 PEE PEE . KB 26 CDL m 1 202 1 CDL CDL . LB 29 Q7G n 1 201 1 Q7G GD0 . MB 30 PC1 p 1 201 1 PC1 PC1 . NB 26 CDL q 1 101 6 CDL CDL . OB 26 CDL q 1 102 8 CDL CDL . PB 31 UTP G1 1 401 1 UTP UTP . QB 32 ATP A1 1 601 5 ATP ATP . RB 33 MG A1 1 602 6 MG MG . SB 32 ATP B1 1 601 1 ATP ATP . TB 33 MG B1 1 602 2 MG MG . UB 32 ATP C1 1 601 3 ATP ATP . VB 33 MG C1 1 602 4 MG MG . WB 32 ATP D1 1 601 7 ATP ATP . XB 33 MG D1 1 602 8 MG MG . YB 34 ADP E1 1 601 1 ADP ADP . ZB 33 MG E1 1 602 2 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B LMT . . . HB 28 312.247 274.352 150.953 1 75.6 ? C1B LMT 203 j 1 HETATM 2 C C2B LMT . . . HB 28 310.738 274.231 151.12 1 75.6 ? C2B LMT 203 j 1 HETATM 3 C C3B LMT . . . HB 28 310.418 273.26 152.247 1 75.6 ? C3B LMT 203 j 1 HETATM 4 C C4B LMT . . . HB 28 311.122 271.931 152.019 1 75.6 ? C4B LMT 203 j 1 HETATM 5 C C5B LMT . . . HB 28 312.617 272.162 151.817 1 75.6 ? C5B LMT 203 j 1 HETATM 6 C C6B LMT . . . HB 28 313.366 270.897 151.47 1 75.6 ? C6B LMT 203 j 1 HETATM 7 O O1B LMT . . . HB 28 312.776 274.918 152.127 1 75.6 ? O1B LMT 203 j 1 HETATM 8 O O2B LMT . . . HB 28 310.179 275.509 151.404 1 75.6 ? O2B LMT 203 j 1 HETATM 9 O O3B LMT . . . HB 28 309.011 273.056 152.326 1 75.6 ? O3B LMT 203 j 1 HETATM 10 O O4' LMT . . . HB 28 310.931 271.08 153.144 1 75.6 ? O4' LMT 203 j 1 HETATM 11 O O5B LMT . . . HB 28 312.822 273.078 150.73 1 75.6 ? O5B LMT 203 j 1 HETATM 12 O O6B LMT . . . HB 28 313.206 269.909 152.478 1 75.6 ? O6B LMT 203 j 1 HETATM 13 C C1' LMT . . . HB 28 315.604 277.744 153.24 1 75.6 ? C1' LMT 203 j 1 HETATM 14 C C2' LMT . . . HB 28 314.309 278.286 152.647 1 75.6 ? C2' LMT 203 j 1 HETATM 15 C C3' LMT . . . HB 28 313.237 277.205 152.665 1 75.6 ? C3' LMT 203 j 1 HETATM 16 C C4' LMT . . . HB 28 313.759 275.954 151.978 1 75.6 ? C4' LMT 203 j 1 HETATM 17 C C5' LMT . . . HB 28 315.068 275.509 152.614 1 75.6 ? C5' LMT 203 j 1 HETATM 18 C C6' LMT . . . HB 28 315.697 274.323 151.923 1 75.6 ? C6' LMT 203 j 1 HETATM 19 O O1' LMT . . . HB 28 316.584 278.734 153.112 1 75.6 ? O1' LMT 203 j 1 HETATM 20 O O2' LMT . . . HB 28 313.871 279.417 153.391 1 75.6 ? O2' LMT 203 j 1 HETATM 21 O O3' LMT . . . HB 28 312.062 277.675 152.011 1 75.6 ? O3' LMT 203 j 1 HETATM 22 O O5' LMT . . . HB 28 316.017 276.585 152.54 1 75.6 ? O5' LMT 203 j 1 HETATM 23 O O6' LMT . . . HB 28 316.94 273.975 152.519 1 75.6 ? O6' LMT 203 j 1 HETATM 24 C C1 LMT . . . HB 28 316.674 279.627 154.225 1 75.6 ? C1 LMT 203 j 1 HETATM 25 C C2 LMT . . . HB 28 318.052 279.5 154.827 1 75.6 ? C2 LMT 203 j 1 HETATM 26 C C3 LMT . . . HB 28 318.34 280.507 155.931 1 75.6 ? C3 LMT 203 j 1 HETATM 27 C C4 LMT . . . HB 28 318.215 281.956 155.492 1 75.6 ? C4 LMT 203 j 1 HETATM 28 C C5 LMT . . . HB 28 319.116 282.917 156.252 1 75.6 ? C5 LMT 203 j 1 HETATM 29 C C6 LMT . . . HB 28 318.811 283.039 157.736 1 75.6 ? C6 LMT 203 j 1 HETATM 30 C C7 LMT . . . HB 28 317.458 283.661 158.044 1 75.6 ? C7 LMT 203 j 1 HETATM 31 C C8 LMT . . . HB 28 317.351 284.239 159.448 1 75.6 ? C8 LMT 203 j 1 HETATM 32 C C9 LMT . . . HB 28 317.636 283.242 160.559 1 75.6 ? C9 LMT 203 j 1 HETATM 33 C C10 LMT . . . HB 28 317.61 283.851 161.95 1 75.6 ? C10 LMT 203 j 1 HETATM 34 C C11 LMT . . . HB 28 317.975 282.879 163.058 1 75.6 ? C11 LMT 203 j 1 HETATM 35 C C12 LMT . . . HB 28 317.996 283.523 164.424 1 75.6 ? C12 LMT 203 j 1 HETATM 36 H H1B LMT . . . HB 28 312.509 274.87 150.032 1 75.6 ? H1B LMT 203 j 1 HETATM 37 H H2B LMT . . . HB 28 310.302 273.875 150.187 1 75.6 ? H2B LMT 203 j 1 HETATM 38 H H3B LMT . . . HB 28 310.759 273.678 153.193 1 75.6 ? H3B LMT 203 j 1 HETATM 39 H H4B LMT . . . HB 28 310.708 271.448 151.134 1 75.6 ? H4B LMT 203 j 1 HETATM 40 H H5B LMT . . . HB 28 313.039 272.563 152.738 1 75.6 ? H5B LMT 203 j 1 HETATM 41 H "H6'2" LMT . . . HB 28 312.953 270.435 150.575 1 75.6 ? "H6'2" LMT 203 j 1 HETATM 42 H "H6'1" LMT . . . HB 28 314.418 271.091 151.27 1 75.6 ? "H6'1" LMT 203 j 1 HETATM 43 H H1' LMT . . . HB 28 315.463 277.493 154.29 1 75.6 ? H1' LMT 203 j 1 HETATM 44 H H2' LMT . . . HB 28 314.48 278.582 151.613 1 75.6 ? H2' LMT 203 j 1 HETATM 45 H H3' LMT . . . HB 28 312.981 276.964 153.696 1 75.6 ? H3' LMT 203 j 1 HETATM 46 H H4' LMT . . . HB 28 313.939 276.174 150.928 1 75.6 ? H4' LMT 203 j 1 HETATM 47 H H5' LMT . . . HB 28 314.898 275.253 153.659 1 75.6 ? H5' LMT 203 j 1 HETATM 48 H H6D LMT . . . HB 28 315.949 274.567 150.892 1 75.6 ? H6D LMT 203 j 1 HETATM 49 H H6E LMT . . . HB 28 315.023 273.468 151.89 1 75.6 ? H6E LMT 203 j 1 HETATM 50 H H12 LMT . . . HB 28 315.92 279.416 154.981 1 75.6 ? H12 LMT 203 j 1 HETATM 51 H H11 LMT . . . HB 28 316.489 280.645 153.889 1 75.6 ? H11 LMT 203 j 1 HETATM 52 H H22 LMT . . . HB 28 318.805 279.589 154.045 1 75.6 ? H22 LMT 203 j 1 HETATM 53 H H21 LMT . . . HB 28 318.191 278.49 155.209 1 75.6 ? H21 LMT 203 j 1 HETATM 54 H H32 LMT . . . HB 28 319.339 280.336 156.33 1 75.6 ? H32 LMT 203 j 1 HETATM 55 H H31 LMT . . . HB 28 317.677 280.324 156.775 1 75.6 ? H31 LMT 203 j 1 HETATM 56 H H42 LMT . . . HB 28 318.419 282.032 154.425 1 75.6 ? H42 LMT 203 j 1 HETATM 57 H H41 LMT . . . HB 28 317.178 282.276 155.59 1 75.6 ? H41 LMT 203 j 1 HETATM 58 H H52 LMT . . . HB 28 319.062 283.903 155.792 1 75.6 ? H52 LMT 203 j 1 HETATM 59 H H51 LMT . . . HB 28 320.155 282.619 156.119 1 75.6 ? H51 LMT 203 j 1 HETATM 60 H H62 LMT . . . HB 28 319.597 283.614 158.223 1 75.6 ? H62 LMT 203 j 1 HETATM 61 H H61 LMT . . . HB 28 318.872 282.056 158.201 1 75.6 ? H61 LMT 203 j 1 HETATM 62 H H72 LMT . . . HB 28 317.241 284.437 157.313 1 75.6 ? H72 LMT 203 j 1 HETATM 63 H H71 LMT . . . HB 28 316.673 282.921 157.894 1 75.6 ? H71 LMT 203 j 1 HETATM 64 H H82 LMT . . . HB 28 318.026 285.089 159.542 1 75.6 ? H82 LMT 203 j 1 HETATM 65 H H81 LMT . . . HB 28 316.36 284.668 159.589 1 75.6 ? H81 LMT 203 j 1 HETATM 66 H H92 LMT . . . HB 28 318.6 282.766 160.392 1 75.6 ? H92 LMT 203 j 1 HETATM 67 H H91 LMT . . . HB 28 316.919 282.423 160.506 1 75.6 ? H91 LMT 203 j 1 HETATM 68 H H102 LMT . . . HB 28 316.623 284.269 162.146 1 75.6 ? H102 LMT 203 j 1 HETATM 69 H H101 LMT . . . HB 28 318.278 284.711 161.986 1 75.6 ? H101 LMT 203 j 1 HETATM 70 H H112 LMT . . . HB 28 318.943 282.427 162.851 1 75.6 ? H112 LMT 203 j 1 HETATM 71 H H111 LMT . . . HB 28 317.278 282.042 163.059 1 75.6 ? H111 LMT 203 j 1 HETATM 72 H H123 LMT . . . HB 28 318.263 282.809 165.202 1 75.6 ? H123 LMT 203 j 1 HETATM 73 H H122 LMT . . . HB 28 317.027 283.938 164.701 1 75.6 ? H122 LMT 203 j 1 HETATM 74 H H121 LMT . . . HB 28 318.713 284.34 164.486 1 75.6 ? H121 LMT 203 j 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 48 _model_server_stats.create_model_time_ms 1366 _model_server_stats.query_time_ms 718 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 74 #