data_8APF
#
_model_server_result.job_id            8C6epldfQlAlxvjI7kZuEg 
_model_server_result.datetime_utc      '2024-11-15 07:37:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8apf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"ZA","auth_seq_id":406}' 
#
_entry.id    8APF 
#
_exptl.entry_id    8APF 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              510.615 
_entity.id                          28 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DODECYL-BETA-D-MALTOSIDE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8APF 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8APF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    42-meric 
_pdbx_struct_assembly.oligomeric_count      42 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 28 ZA N N 
? 28 HB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 V C AME 1 e AME 1 1_555 V N GLN 2 e GLN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
metalc ? metalc1 KA OG1 THR 213 A1 THR 213 1_555 RB MG MG . A1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
metalc ? metalc2 QB O2G ATP . A1 ATP 601 1_555 RB MG MG . A1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? 
metalc ? metalc3 QB O2B ATP . A1 ATP 601 1_555 RB MG MG . A1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? 
metalc ? metalc4 LA OG1 THR 213 B1 THR 213 1_555 TB MG MG . B1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? 
metalc ? metalc5 SB O2G ATP . B1 ATP 601 1_555 TB MG MG . B1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.871 ? 
metalc ? metalc6 SB O2B ATP . B1 ATP 601 1_555 TB MG MG . B1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? 
metalc ? metalc7 MA OG1 THR 213 C1 THR 213 1_555 VB MG MG . C1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
metalc ? metalc8 UB O2G ATP . C1 ATP 601 1_555 VB MG MG . C1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? 
metalc ? metalc9 UB O2B ATP . C1 ATP 601 1_555 VB MG MG . C1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? 
metalc ? metalc10 NA OG1 THR 190 D1 THR 190 1_555 XB MG MG . D1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? 
metalc ? metalc11 NA OE2 GLU 215 D1 GLU 215 1_555 XB MG MG . D1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? 
metalc ? metalc12 WB O2G ATP . D1 ATP 601 1_555 XB MG MG . D1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? 
metalc ? metalc13 WB O2B ATP . D1 ATP 601 1_555 XB MG MG . D1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? 
metalc ? metalc14 OA OG1 THR 190 E1 THR 190 1_555 ZB MG MG . E1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? 
metalc ? metalc15 YB O3B ADP . E1 ADP 601 1_555 ZB MG MG . E1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? 
#
_chem_comp.formula           'C24 H46 O11' 
_chem_comp.formula_weight    510.615 
_chem_comp.id                LMT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DODECYL-BETA-D-MALTOSIDE 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     8APF 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
QA 26 CDL L 1 101 12 CDL CDL . 
RA 26 CDL M 1 201 1 CDL CDL . 
SA 27 PEE M 1 202 2 PEE PEE . 
TA 26 CDL c 1 201 3 CDL CDL . 
UA 26 CDL e 1 401 2 CDL CDL . 
VA 26 CDL e 1 402 5 CDL CDL . 
WA 26 CDL e 1 403 7 CDL CDL . 
XA 26 CDL e 1 404 10 CDL CDL . 
YA 26 CDL e 1 405 11 CDL CDL . 
ZA 28 LMT e 1 406 1 LMT LMT . 
AB 29 Q7G e 1 407 2 Q7G GD0 . 
BB 26 CDL f 1 201 9 CDL CDL . 
CB 27 PEE f 1 202 1 PEE PEE . 
DB 30 PC1 f 1 203 2 PC1 PC1 . 
EB 30 PC1 i 1 201 4 PC1 PC1 . 
FB 26 CDL j 1 201 4 CDL CDL . 
GB 30 PC1 j 1 202 3 PC1 PC1 . 
HB 28 LMT j 1 203 2 LMT LMT . 
IB 26 CDL l 1 101 12 CDL CDL . 
JB 27 PEE m 1 201 2 PEE PEE . 
KB 26 CDL m 1 202 1 CDL CDL . 
LB 29 Q7G n 1 201 1 Q7G GD0 . 
MB 30 PC1 p 1 201 1 PC1 PC1 . 
NB 26 CDL q 1 101 6 CDL CDL . 
OB 26 CDL q 1 102 8 CDL CDL . 
PB 31 UTP G1 1 401 1 UTP UTP . 
QB 32 ATP A1 1 601 5 ATP ATP . 
RB 33 MG A1 1 602 6 MG MG . 
SB 32 ATP B1 1 601 1 ATP ATP . 
TB 33 MG B1 1 602 2 MG MG . 
UB 32 ATP C1 1 601 3 ATP ATP . 
VB 33 MG C1 1 602 4 MG MG . 
WB 32 ATP D1 1 601 7 ATP ATP . 
XB 33 MG D1 1 602 8 MG MG . 
YB 34 ADP E1 1 601 1 ADP ADP . 
ZB 33 MG E1 1 602 2 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1B LMT . . . ZA 28 336.256 286.108 190.594 1 79.26 ? C1B LMT 406 e 1 
HETATM 2 C C2B LMT . . . ZA 28 337.061 285.289 189.593 1 79.26 ? C2B LMT 406 e 1 
HETATM 3 C C3B LMT . . . ZA 28 336.755 283.809 189.772 1 79.26 ? C3B LMT 406 e 1 
HETATM 4 C C4B LMT . . . ZA 28 336.968 283.395 191.221 1 79.26 ? C4B LMT 406 e 1 
HETATM 5 C C5B LMT . . . ZA 28 336.161 284.302 192.145 1 79.26 ? C5B LMT 406 e 1 
HETATM 6 C C6B LMT . . . ZA 28 336.412 284.024 193.608 1 79.26 ? C6B LMT 406 e 1 
HETATM 7 O O1B LMT . . . ZA 28 334.891 285.937 190.305 1 79.26 ? O1B LMT 406 e 1 
HETATM 8 O O2B LMT . . . ZA 28 336.739 285.696 188.267 1 79.26 ? O2B LMT 406 e 1 
HETATM 9 O O3B LMT . . . ZA 28 337.59 283.034 188.917 1 79.26 ? O3B LMT 406 e 1 
HETATM 10 O O4' LMT . . . ZA 28 336.549 282.047 191.408 1 79.26 ? O4' LMT 406 e 1 
HETATM 11 O O5B LMT . . . ZA 28 336.524 285.673 191.914 1 79.26 ? O5B LMT 406 e 1 
HETATM 12 O O6B LMT . . . ZA 28 337.772 284.253 193.953 1 79.26 ? O6B LMT 406 e 1 
HETATM 13 C C1' LMT . . . ZA 28 331.641 288.361 189.474 1 79.26 ? C1' LMT 406 e 1 
HETATM 14 C C2' LMT . . . ZA 28 332.968 288.794 188.866 1 79.26 ? C2' LMT 406 e 1 
HETATM 15 C C3' LMT . . . ZA 28 333.955 287.636 188.909 1 79.26 ? C3' LMT 406 e 1 
HETATM 16 C C4' LMT . . . ZA 28 334.065 287.11 190.33 1 79.26 ? C4' LMT 406 e 1 
HETATM 17 C C5' LMT . . . ZA 28 332.69 286.747 190.872 1 79.26 ? C5' LMT 406 e 1 
HETATM 18 C C6' LMT . . . ZA 28 332.713 286.311 192.317 1 79.26 ? C6' LMT 406 e 1 
HETATM 19 O O1' LMT . . . ZA 28 330.788 289.467 189.48 1 79.26 ? O1' LMT 406 e 1 
HETATM 20 O O2' LMT . . . ZA 28 332.77 289.214 187.52 1 79.26 ? O2' LMT 406 e 1 
HETATM 21 O O3' LMT . . . ZA 28 335.23 288.064 188.439 1 79.26 ? O3' LMT 406 e 1 
HETATM 22 O O5' LMT . . . ZA 28 331.833 287.896 190.797 1 79.26 ? O5' LMT 406 e 1 
HETATM 23 O O6' LMT . . . ZA 28 333.244 287.328 193.155 1 79.26 ? O6' LMT 406 e 1 
HETATM 24 C C1 LMT . . . ZA 28 329.486 289.187 189.994 1 79.26 ? C1 LMT 406 e 1 
HETATM 25 C C2 LMT . . . ZA 28 328.461 289.538 188.945 1 79.26 ? C2 LMT 406 e 1 
HETATM 26 C C3 LMT . . . ZA 28 327.047 289.167 189.353 1 79.26 ? C3 LMT 406 e 1 
HETATM 27 C C4 LMT . . . ZA 28 325.998 289.486 188.303 1 79.26 ? C4 LMT 406 e 1 
HETATM 28 C C5 LMT . . . ZA 28 324.601 289.017 188.67 1 79.26 ? C5 LMT 406 e 1 
HETATM 29 C C6 LMT . . . ZA 28 323.562 289.296 187.6 1 79.26 ? C6 LMT 406 e 1 
HETATM 30 C C7 LMT . . . ZA 28 322.171 288.798 187.951 1 79.26 ? C7 LMT 406 e 1 
HETATM 31 C C8 LMT . . . ZA 28 321.106 289.168 186.932 1 79.26 ? C8 LMT 406 e 1 
HETATM 32 C C9 LMT . . . ZA 28 321.302 288.531 185.566 1 79.26 ? C9 LMT 406 e 1 
HETATM 33 C C10 LMT . . . ZA 28 320.23 288.904 184.559 1 79.26 ? C10 LMT 406 e 1 
HETATM 34 C C11 LMT . . . ZA 28 320.381 288.221 183.214 1 79.26 ? C11 LMT 406 e 1 
HETATM 35 C C12 LMT . . . ZA 28 319.32 288.637 182.228 1 79.26 ? C12 LMT 406 e 1 
HETATM 36 H H1B LMT . . . ZA 28 336.586 287.145 190.633 1 79.26 ? H1B LMT 406 e 1 
HETATM 37 H H2B LMT . . . ZA 28 338.122 285.472 189.751 1 79.26 ? H2B LMT 406 e 1 
HETATM 38 H H3B LMT . . . ZA 28 335.717 283.619 189.504 1 79.26 ? H3B LMT 406 e 1 
HETATM 39 H H4B LMT . . . ZA 28 338.025 283.475 191.468 1 79.26 ? H4B LMT 406 e 1 
HETATM 40 H H5B LMT . . . ZA 28 335.101 284.15 191.95 1 79.26 ? H5B LMT 406 e 1 
HETATM 41 H "H6'2" LMT . . . ZA 28 335.857 284.719 194.237 1 79.26 ? "H6'2" LMT 406 e 1 
HETATM 42 H "H6'1" LMT . . . ZA 28 336.097 283.021 193.89 1 79.26 ? "H6'1" LMT 406 e 1 
HETATM 43 H H1' LMT . . . ZA 28 331.193 287.572 188.871 1 79.26 ? H1' LMT 406 e 1 
HETATM 44 H H2' LMT . . . ZA 28 333.381 289.621 189.443 1 79.26 ? H2' LMT 406 e 1 
HETATM 45 H H3' LMT . . . ZA 28 333.603 286.835 188.26 1 79.26 ? H3' LMT 406 e 1 
HETATM 46 H H4' LMT . . . ZA 28 334.505 287.876 190.968 1 79.26 ? H4' LMT 406 e 1 
HETATM 47 H H5' LMT . . . ZA 28 332.263 285.943 190.274 1 79.26 ? H5' LMT 406 e 1 
HETATM 48 H H6D LMT . . . ZA 28 331.7 286.156 192.686 1 79.26 ? H6D LMT 406 e 1 
HETATM 49 H H6E LMT . . . ZA 28 333.244 285.369 192.45 1 79.26 ? H6E LMT 406 e 1 
HETATM 50 H H12 LMT . . . ZA 28 329.294 289.76 190.9 1 79.26 ? H12 LMT 406 e 1 
HETATM 51 H H11 LMT . . . ZA 28 329.412 288.137 190.273 1 79.26 ? H11 LMT 406 e 1 
HETATM 52 H H22 LMT . . . ZA 28 328.714 289.059 188.001 1 79.26 ? H22 LMT 406 e 1 
HETATM 53 H H21 LMT . . . ZA 28 328.513 290.603 188.724 1 79.26 ? H21 LMT 406 e 1 
HETATM 54 H H32 LMT . . . ZA 28 326.791 289.671 190.284 1 79.26 ? H32 LMT 406 e 1 
HETATM 55 H H31 LMT . . . ZA 28 327.004 288.107 189.599 1 79.26 ? H31 LMT 406 e 1 
HETATM 56 H H42 LMT . . . ZA 28 326.291 289.05 187.35 1 79.26 ? H42 LMT 406 e 1 
HETATM 57 H H41 LMT . . . ZA 28 325.984 290.559 188.117 1 79.26 ? H41 LMT 406 e 1 
HETATM 58 H H52 LMT . . . ZA 28 324.293 289.482 189.605 1 79.26 ? H52 LMT 406 e 1 
HETATM 59 H H51 LMT . . . ZA 28 324.62 287.952 188.892 1 79.26 ? H51 LMT 406 e 1 
HETATM 60 H H62 LMT . . . ZA 28 323.887 288.85 186.661 1 79.26 ? H62 LMT 406 e 1 
HETATM 61 H H61 LMT . . . ZA 28 323.527 290.364 187.393 1 79.26 ? H61 LMT 406 e 1 
HETATM 62 H H72 LMT . . . ZA 28 321.886 289.178 188.931 1 79.26 ? H72 LMT 406 e 1 
HETATM 63 H H71 LMT . . . ZA 28 322.193 287.717 188.078 1 79.26 ? H71 LMT 406 e 1 
HETATM 64 H H82 LMT . . . ZA 28 321.064 290.25 186.825 1 79.26 ? H82 LMT 406 e 1 
HETATM 65 H H81 LMT . . . ZA 28 320.124 288.899 187.319 1 79.26 ? H81 LMT 406 e 1 
HETATM 66 H H92 LMT . . . ZA 28 321.344 287.447 185.67 1 79.26 ? H92 LMT 406 e 1 
HETATM 67 H H91 LMT . . . ZA 28 322.279 288.801 185.169 1 79.26 ? H91 LMT 406 e 1 
HETATM 68 H H102 LMT . . . ZA 28 320.226 289.984 184.416 1 79.26 ? H102 LMT 406 e 1 
HETATM 69 H H101 LMT . . . ZA 28 319.247 288.683 184.971 1 79.26 ? H101 LMT 406 e 1 
HETATM 70 H H112 LMT . . . ZA 28 320.36 287.139 183.341 1 79.26 ? H112 LMT 406 e 1 
HETATM 71 H H111 LMT . . . ZA 28 321.368 288.427 182.801 1 79.26 ? H111 LMT 406 e 1 
HETATM 72 H H123 LMT . . . ZA 28 319.406 288.095 181.287 1 79.26 ? H123 LMT 406 e 1 
HETATM 73 H H122 LMT . . . ZA 28 319.377 289.697 181.983 1 79.26 ? H122 LMT 406 e 1 
HETATM 74 H H121 LMT . . . ZA 28 318.315 288.46 182.607 1 79.26 ? H121 LMT 406 e 1 
#
_model_server_stats.io_time_ms              41 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    495 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           74 
#