data_8APJ # _model_server_result.job_id l4_E-3FsiNnyrX56wsK3yw _model_server_result.datetime_utc '2024-12-18 18:41:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8apj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"ZA","auth_seq_id":406}' # _entry.id 8APJ # _exptl.entry_id 8APJ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 510.615 _entity.id 28 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8APJ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8APJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 42-meric _pdbx_struct_assembly.oligomeric_count 42 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 28 ZA N N ? 28 IB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 F C AME 1 e AME 1 1_555 F N GLN 2 e GLN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 KA OG1 THR 213 A1 THR 213 1_555 RB MG MG . A1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc2 QB O2G ATP . A1 ATP 601 1_555 RB MG MG . A1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc3 QB O2B ATP . A1 ATP 601 1_555 RB MG MG . A1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc4 LA OG1 THR 213 B1 THR 213 1_555 TB MG MG . B1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? metalc ? metalc5 SB O2G ATP . B1 ATP 601 1_555 TB MG MG . B1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.885 ? metalc ? metalc6 SB O2B ATP . B1 ATP 601 1_555 TB MG MG . B1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc7 MA OG1 THR 213 C1 THR 213 1_555 VB MG MG . C1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc8 UB O2G ATP . C1 ATP 601 1_555 VB MG MG . C1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc9 UB O2B ATP . C1 ATP 601 1_555 VB MG MG . C1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.899 ? metalc ? metalc10 NA OG1 THR 190 D1 THR 190 1_555 XB MG MG . D1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.902 ? metalc ? metalc11 WB O2G ATP . D1 ATP 601 1_555 XB MG MG . D1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? metalc ? metalc12 WB O2B ATP . D1 ATP 601 1_555 XB MG MG . D1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? metalc ? metalc13 OA OG1 THR 190 E1 THR 190 1_555 ZB MG MG . E1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc14 YB O3B ADP . E1 ADP 601 1_555 ZB MG MG . E1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8APJ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code QA 26 CDL L 1 101 12 CDL CDL . RA 26 CDL M 1 201 1 CDL CDL . SA 27 PEE M 1 202 2 PEE PEE . TA 26 CDL c 1 201 3 CDL CDL . UA 26 CDL e 1 401 2 CDL CDL . VA 26 CDL e 1 402 5 CDL CDL . WA 26 CDL e 1 403 7 CDL CDL . XA 26 CDL e 1 404 10 CDL CDL . YA 26 CDL e 1 405 11 CDL CDL . ZA 28 LMT e 1 406 1 LMT LMT . AB 29 Q7G e 1 407 2 Q7G GD0 . BB 26 CDL f 1 201 9 CDL CDL . CB 27 PEE f 1 202 1 PEE PEE . DB 30 PC1 f 1 203 2 PC1 PC1 . EB 30 PC1 i 1 201 4 PC1 PC1 . FB 26 CDL j 1 201 4 CDL CDL . GB 26 CDL j 1 202 6 CDL CDL . HB 30 PC1 j 1 203 3 PC1 PC1 . IB 28 LMT j 1 204 2 LMT LMT . JB 26 CDL l 1 101 12 CDL CDL . KB 26 CDL m 1 201 1 CDL CDL . LB 27 PEE m 1 202 2 PEE PEE . MB 29 Q7G n 1 201 1 Q7G GD0 . NB 30 PC1 p 1 201 1 PC1 PC1 . OB 26 CDL q 1 101 8 CDL CDL . PB 31 UTP H1 1 201 1 UTP UTP . QB 32 ATP A1 1 601 5 ATP ATP . RB 33 MG A1 1 602 6 MG MG . SB 32 ATP B1 1 601 1 ATP ATP . TB 33 MG B1 1 602 2 MG MG . UB 32 ATP C1 1 601 3 ATP ATP . VB 33 MG C1 1 602 4 MG MG . WB 32 ATP D1 1 601 7 ATP ATP . XB 33 MG D1 1 602 8 MG MG . YB 34 ADP E1 1 601 1 ADP ADP . ZB 33 MG E1 1 602 2 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B LMT . . . ZA 28 336.264 286.101 190.588 1 50.04 ? C1B LMT 406 e 1 HETATM 2 C C2B LMT . . . ZA 28 337.065 285.273 189.591 1 50.04 ? C2B LMT 406 e 1 HETATM 3 C C3B LMT . . . ZA 28 336.741 283.796 189.767 1 50.04 ? C3B LMT 406 e 1 HETATM 4 C C4B LMT . . . ZA 28 336.942 283.38 191.217 1 50.04 ? C4B LMT 406 e 1 HETATM 5 C C5B LMT . . . ZA 28 336.138 284.294 192.135 1 50.04 ? C5B LMT 406 e 1 HETATM 6 C C6B LMT . . . ZA 28 336.372 284.01 193.601 1 50.04 ? C6B LMT 406 e 1 HETATM 7 O O1B LMT . . . ZA 28 334.9 285.951 190.287 1 50.04 ? O1B LMT 406 e 1 HETATM 8 O O2B LMT . . . ZA 28 336.758 285.684 188.263 1 50.04 ? O2B LMT 406 e 1 HETATM 9 O O3B LMT . . . ZA 28 337.57 283.012 188.915 1 50.04 ? O3B LMT 406 e 1 HETATM 10 O O4' LMT . . . ZA 28 336.512 282.035 191.401 1 50.04 ? O4' LMT 406 e 1 HETATM 11 O O5B LMT . . . ZA 28 336.516 285.661 191.91 1 50.04 ? O5B LMT 406 e 1 HETATM 12 O O6B LMT . . . ZA 28 337.732 284.216 193.959 1 50.04 ? O6B LMT 406 e 1 HETATM 13 C C1' LMT . . . ZA 28 331.676 288.393 189.435 1 50.04 ? C1' LMT 406 e 1 HETATM 14 C C2' LMT . . . ZA 28 333.008 288.825 188.836 1 50.04 ? C2' LMT 406 e 1 HETATM 15 C C3' LMT . . . ZA 28 333.994 287.666 188.888 1 50.04 ? C3' LMT 406 e 1 HETATM 16 C C4' LMT . . . ZA 28 334.092 287.136 190.31 1 50.04 ? C4' LMT 406 e 1 HETATM 17 C C5' LMT . . . ZA 28 332.712 286.787 190.848 1 50.04 ? C5' LMT 406 e 1 HETATM 18 C C6' LMT . . . ZA 28 332.727 286.362 192.297 1 50.04 ? C6' LMT 406 e 1 HETATM 19 O O1' LMT . . . ZA 28 330.82 289.495 189.424 1 50.04 ? O1' LMT 406 e 1 HETATM 20 O O2' LMT . . . ZA 28 332.819 289.241 187.487 1 50.04 ? O2' LMT 406 e 1 HETATM 21 O O3' LMT . . . ZA 28 335.273 288.093 188.431 1 50.04 ? O3' LMT 406 e 1 HETATM 22 O O5' LMT . . . ZA 28 331.86 287.94 190.763 1 50.04 ? O5' LMT 406 e 1 HETATM 23 O O6' LMT . . . ZA 28 333.207 287.403 193.137 1 50.04 ? O6' LMT 406 e 1 HETATM 24 C C1 LMT . . . ZA 28 329.522 289.219 189.952 1 50.04 ? C1 LMT 406 e 1 HETATM 25 C C2 LMT . . . ZA 28 328.492 289.52 188.895 1 50.04 ? C2 LMT 406 e 1 HETATM 26 C C3 LMT . . . ZA 28 327.084 289.138 189.312 1 50.04 ? C3 LMT 406 e 1 HETATM 27 C C4 LMT . . . ZA 28 326.026 289.485 188.283 1 50.04 ? C4 LMT 406 e 1 HETATM 28 C C5 LMT . . . ZA 28 324.621 289.059 188.67 1 50.04 ? C5 LMT 406 e 1 HETATM 29 C C6 LMT . . . ZA 28 323.582 289.363 187.607 1 50.04 ? C6 LMT 406 e 1 HETATM 30 C C7 LMT . . . ZA 28 322.187 288.881 187.95 1 50.04 ? C7 LMT 406 e 1 HETATM 31 C C8 LMT . . . ZA 28 321.138 289.258 186.92 1 50.04 ? C8 LMT 406 e 1 HETATM 32 C C9 LMT . . . ZA 28 321.341 288.609 185.563 1 50.04 ? C9 LMT 406 e 1 HETATM 33 C C10 LMT . . . ZA 28 320.277 288.972 184.545 1 50.04 ? C10 LMT 406 e 1 HETATM 34 C C11 LMT . . . ZA 28 320.439 288.273 183.209 1 50.04 ? C11 LMT 406 e 1 HETATM 35 C C12 LMT . . . ZA 28 319.377 288.662 182.211 1 50.04 ? C12 LMT 406 e 1 HETATM 36 H H1B LMT . . . ZA 28 336.606 287.133 190.63 1 50.04 ? H1B LMT 406 e 1 HETATM 37 H H2B LMT . . . ZA 28 338.127 285.443 189.757 1 50.04 ? H2B LMT 406 e 1 HETATM 38 H H3B LMT . . . ZA 28 335.702 283.62 189.497 1 50.04 ? H3B LMT 406 e 1 HETATM 39 H H4B LMT . . . ZA 28 337.999 283.451 191.469 1 50.04 ? H4B LMT 406 e 1 HETATM 40 H H5B LMT . . . ZA 28 335.079 284.154 191.929 1 50.04 ? H5B LMT 406 e 1 HETATM 41 H "H6'2" LMT . . . ZA 28 335.821 284.711 194.227 1 50.04 ? "H6'2" LMT 406 e 1 HETATM 42 H "H6'1" LMT . . . ZA 28 336.039 283.011 193.877 1 50.04 ? "H6'1" LMT 406 e 1 HETATM 43 H H1' LMT . . . ZA 28 331.238 287.597 188.836 1 50.04 ? H1' LMT 406 e 1 HETATM 44 H H2' LMT . . . ZA 28 333.415 289.651 189.414 1 50.04 ? H2' LMT 406 e 1 HETATM 45 H H3' LMT . . . ZA 28 333.646 286.867 188.236 1 50.04 ? H3' LMT 406 e 1 HETATM 46 H H4' LMT . . . ZA 28 334.539 287.893 190.95 1 50.04 ? H4' LMT 406 e 1 HETATM 47 H H5' LMT . . . ZA 28 332.283 285.982 190.255 1 50.04 ? H5' LMT 406 e 1 HETATM 48 H H6D LMT . . . ZA 28 331.715 286.171 192.65 1 50.04 ? H6D LMT 406 e 1 HETATM 49 H H6E LMT . . . ZA 28 333.292 285.442 192.443 1 50.04 ? H6E LMT 406 e 1 HETATM 50 H H12 LMT . . . ZA 28 329.328 289.822 190.837 1 50.04 ? H12 LMT 406 e 1 HETATM 51 H H11 LMT . . . ZA 28 329.462 288.179 190.266 1 50.04 ? H11 LMT 406 e 1 HETATM 52 H H22 LMT . . . ZA 28 328.752 289.015 187.967 1 50.04 ? H22 LMT 406 e 1 HETATM 53 H H21 LMT . . . ZA 28 328.527 290.578 188.639 1 50.04 ? H21 LMT 406 e 1 HETATM 54 H H32 LMT . . . ZA 28 326.838 289.614 190.26 1 50.04 ? H32 LMT 406 e 1 HETATM 55 H H31 LMT . . . ZA 28 327.045 288.071 189.526 1 50.04 ? H31 LMT 406 e 1 HETATM 56 H H42 LMT . . . ZA 28 326.293 289.04 187.326 1 50.04 ? H42 LMT 406 e 1 HETATM 57 H H41 LMT . . . ZA 28 326.041 290.558 188.096 1 50.04 ? H41 LMT 406 e 1 HETATM 58 H H52 LMT . . . ZA 28 324.336 289.54 189.604 1 50.04 ? H52 LMT 406 e 1 HETATM 59 H H51 LMT . . . ZA 28 324.61 287.995 188.902 1 50.04 ? H51 LMT 406 e 1 HETATM 60 H H62 LMT . . . ZA 28 323.899 288.928 186.662 1 50.04 ? H62 LMT 406 e 1 HETATM 61 H H61 LMT . . . ZA 28 323.557 290.433 187.415 1 50.04 ? H61 LMT 406 e 1 HETATM 62 H H72 LMT . . . ZA 28 321.899 289.268 188.925 1 50.04 ? H72 LMT 406 e 1 HETATM 63 H H71 LMT . . . ZA 28 322.198 287.8 188.081 1 50.04 ? H71 LMT 406 e 1 HETATM 64 H H82 LMT . . . ZA 28 321.117 290.339 186.804 1 50.04 ? H82 LMT 406 e 1 HETATM 65 H H81 LMT . . . ZA 28 320.147 289.01 187.297 1 50.04 ? H81 LMT 406 e 1 HETATM 66 H H92 LMT . . . ZA 28 321.387 287.527 185.677 1 50.04 ? H92 LMT 406 e 1 HETATM 67 H H91 LMT . . . ZA 28 322.318 288.881 185.169 1 50.04 ? H91 LMT 406 e 1 HETATM 68 H H102 LMT . . . ZA 28 320.276 290.05 184.391 1 50.04 ? H102 LMT 406 e 1 HETATM 69 H H101 LMT . . . ZA 28 319.292 288.757 184.954 1 50.04 ? H101 LMT 406 e 1 HETATM 70 H H112 LMT . . . ZA 28 320.43 287.193 183.35 1 50.04 ? H112 LMT 406 e 1 HETATM 71 H H111 LMT . . . ZA 28 321.424 288.485 182.797 1 50.04 ? H111 LMT 406 e 1 HETATM 72 H H123 LMT . . . ZA 28 319.475 288.105 181.28 1 50.04 ? H123 LMT 406 e 1 HETATM 73 H H122 LMT . . . ZA 28 319.424 289.718 181.95 1 50.04 ? H122 LMT 406 e 1 HETATM 74 H H121 LMT . . . ZA 28 318.372 288.477 182.586 1 50.04 ? H121 LMT 406 e 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 528 _model_server_stats.query_time_ms 348 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 74 #