data_8APJ # _model_server_result.job_id vluBBtFLmQKUz3_6AW7N9Q _model_server_result.datetime_utc '2024-12-18 18:47:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8apj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"SB","auth_seq_id":601}' # _entry.id 8APJ # _exptl.entry_id 8APJ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 32 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8APJ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8APJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 42-meric _pdbx_struct_assembly.oligomeric_count 42 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 32 QB N N ? 32 SB N N ? 32 UB N N ? 32 WB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 F C AME 1 e AME 1 1_555 F N GLN 2 e GLN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 KA OG1 THR 213 A1 THR 213 1_555 RB MG MG . A1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc2 QB O2G ATP . A1 ATP 601 1_555 RB MG MG . A1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc3 QB O2B ATP . A1 ATP 601 1_555 RB MG MG . A1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc4 LA OG1 THR 213 B1 THR 213 1_555 TB MG MG . B1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? metalc ? metalc5 SB O2G ATP . B1 ATP 601 1_555 TB MG MG . B1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.885 ? metalc ? metalc6 SB O2B ATP . B1 ATP 601 1_555 TB MG MG . B1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc7 MA OG1 THR 213 C1 THR 213 1_555 VB MG MG . C1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc8 UB O2G ATP . C1 ATP 601 1_555 VB MG MG . C1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc9 UB O2B ATP . C1 ATP 601 1_555 VB MG MG . C1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.899 ? metalc ? metalc10 NA OG1 THR 190 D1 THR 190 1_555 XB MG MG . D1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.902 ? metalc ? metalc11 WB O2G ATP . D1 ATP 601 1_555 XB MG MG . D1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? metalc ? metalc12 WB O2B ATP . D1 ATP 601 1_555 XB MG MG . D1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? metalc ? metalc13 OA OG1 THR 190 E1 THR 190 1_555 ZB MG MG . E1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc14 YB O3B ADP . E1 ADP 601 1_555 ZB MG MG . E1 MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8APJ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code QA 26 CDL L 1 101 12 CDL CDL . RA 26 CDL M 1 201 1 CDL CDL . SA 27 PEE M 1 202 2 PEE PEE . TA 26 CDL c 1 201 3 CDL CDL . UA 26 CDL e 1 401 2 CDL CDL . VA 26 CDL e 1 402 5 CDL CDL . WA 26 CDL e 1 403 7 CDL CDL . XA 26 CDL e 1 404 10 CDL CDL . YA 26 CDL e 1 405 11 CDL CDL . ZA 28 LMT e 1 406 1 LMT LMT . AB 29 Q7G e 1 407 2 Q7G GD0 . BB 26 CDL f 1 201 9 CDL CDL . CB 27 PEE f 1 202 1 PEE PEE . DB 30 PC1 f 1 203 2 PC1 PC1 . EB 30 PC1 i 1 201 4 PC1 PC1 . FB 26 CDL j 1 201 4 CDL CDL . GB 26 CDL j 1 202 6 CDL CDL . HB 30 PC1 j 1 203 3 PC1 PC1 . IB 28 LMT j 1 204 2 LMT LMT . JB 26 CDL l 1 101 12 CDL CDL . KB 26 CDL m 1 201 1 CDL CDL . LB 27 PEE m 1 202 2 PEE PEE . MB 29 Q7G n 1 201 1 Q7G GD0 . NB 30 PC1 p 1 201 1 PC1 PC1 . OB 26 CDL q 1 101 8 CDL CDL . PB 31 UTP H1 1 201 1 UTP UTP . QB 32 ATP A1 1 601 5 ATP ATP . RB 33 MG A1 1 602 6 MG MG . SB 32 ATP B1 1 601 1 ATP ATP . TB 33 MG B1 1 602 2 MG MG . UB 32 ATP C1 1 601 3 ATP ATP . VB 33 MG C1 1 602 4 MG MG . WB 32 ATP D1 1 601 7 ATP ATP . XB 33 MG D1 1 602 8 MG MG . YB 34 ADP E1 1 601 1 ADP ADP . ZB 33 MG E1 1 602 2 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . SB 32 370.204 188.259 261.853 1 49.66 ? PG ATP 601 B1 1 HETATM 2 O O1G ATP . . . SB 32 369.307 188.521 263.009 1 49.66 ? O1G ATP 601 B1 1 HETATM 3 O O2G ATP . . . SB 32 371.676 188.559 262.143 1 49.66 ? O2G ATP 601 B1 1 HETATM 4 O O3G ATP . . . SB 32 370.088 186.837 261.298 1 49.66 ? O3G ATP 601 B1 1 HETATM 5 P PB ATP . . . SB 32 370.712 190.238 259.786 1 49.66 ? PB ATP 601 B1 1 HETATM 6 O O1B ATP . . . SB 32 370.082 191.571 259.724 1 49.66 ? O1B ATP 601 B1 1 HETATM 7 O O2B ATP . . . SB 32 372.126 190.187 260.356 1 49.66 ? O2B ATP 601 B1 1 HETATM 8 O O3B ATP . . . SB 32 369.839 189.203 260.621 1 49.66 ? O3B ATP 601 B1 1 HETATM 9 P PA ATP . . . SB 32 371.962 189.052 257.436 1 49.66 ? PA ATP 601 B1 1 HETATM 10 O O1A ATP . . . SB 32 372.671 187.909 258.044 1 49.66 ? O1A ATP 601 B1 1 HETATM 11 O O2A ATP . . . SB 32 372.826 190.276 257.143 1 49.66 ? O2A ATP 601 B1 1 HETATM 12 O O3A ATP . . . SB 32 370.759 189.543 258.355 1 49.66 ? O3A ATP 601 B1 1 HETATM 13 O O5' ATP . . . SB 32 371.248 188.636 256.056 1 49.66 ? O5' ATP 601 B1 1 HETATM 14 C C5' ATP . . . SB 32 370.111 187.75 256.06 1 49.66 ? C5' ATP 601 B1 1 HETATM 15 C C4' ATP . . . SB 32 370.103 186.947 254.785 1 49.66 ? C4' ATP 601 B1 1 HETATM 16 O O4' ATP . . . SB 32 369.888 187.827 253.659 1 49.66 ? O4' ATP 601 B1 1 HETATM 17 C C3' ATP . . . SB 32 371.397 186.194 254.487 1 49.66 ? C3' ATP 601 B1 1 HETATM 18 O O3' ATP . . . SB 32 371.139 184.958 253.83 1 49.66 ? O3' ATP 601 B1 1 HETATM 19 C C2' ATP . . . SB 32 372.151 187.171 253.586 1 49.66 ? C2' ATP 601 B1 1 HETATM 20 O O2' ATP . . . SB 32 373.056 186.495 252.72 1 49.66 ? O2' ATP 601 B1 1 HETATM 21 C C1' ATP . . . SB 32 371.003 187.785 252.788 1 49.66 ? C1' ATP 601 B1 1 HETATM 22 N N9 ATP . . . SB 32 371.264 189.14 252.317 1 49.66 ? N9 ATP 601 B1 1 HETATM 23 C C8 ATP . . . SB 32 371.706 190.201 253.062 1 49.66 ? C8 ATP 601 B1 1 HETATM 24 N N7 ATP . . . SB 32 371.864 191.307 252.377 1 49.66 ? N7 ATP 601 B1 1 HETATM 25 C C5 ATP . . . SB 32 371.5 190.949 251.088 1 49.66 ? C5 ATP 601 B1 1 HETATM 26 C C6 ATP . . . SB 32 371.446 191.671 249.881 1 49.66 ? C6 ATP 601 B1 1 HETATM 27 N N6 ATP . . . SB 32 371.781 192.96 249.77 1 49.66 ? N6 ATP 601 B1 1 HETATM 28 N N1 ATP . . . SB 32 371.036 191.015 248.774 1 49.66 ? N1 ATP 601 B1 1 HETATM 29 C C2 ATP . . . SB 32 370.704 189.725 248.878 1 49.66 ? C2 ATP 601 B1 1 HETATM 30 N N3 ATP . . . SB 32 370.716 188.942 249.958 1 49.66 ? N3 ATP 601 B1 1 HETATM 31 C C4 ATP . . . SB 32 371.126 189.616 251.037 1 49.66 ? C4 ATP 601 B1 1 HETATM 32 H "H5'1" ATP . . . SB 32 369.178 188.304 256.157 1 49.66 ? "H5'1" ATP 601 B1 1 HETATM 33 H "H5'2" ATP . . . SB 32 370.215 187.114 256.937 1 49.66 ? "H5'2" ATP 601 B1 1 HETATM 34 H H4' ATP . . . SB 32 369.245 186.277 254.765 1 49.66 ? H4' ATP 601 B1 1 HETATM 35 H H3' ATP . . . SB 32 371.944 185.895 255.379 1 49.66 ? H3' ATP 601 B1 1 HETATM 36 H HO3' ATP . . . SB 32 371.999 184.539 253.565 1 49.66 ? HO3' ATP 601 B1 1 HETATM 37 H H2' ATP . . . SB 32 372.68 187.903 254.192 1 49.66 ? H2' ATP 601 B1 1 HETATM 38 H HO2' ATP . . . SB 32 373.601 185.908 253.308 1 49.66 ? HO2' ATP 601 B1 1 HETATM 39 H H1' ATP . . . SB 32 370.735 187.19 251.918 1 49.66 ? H1' ATP 601 B1 1 HETATM 40 H H8 ATP . . . SB 32 371.901 190.118 254.129 1 49.66 ? H8 ATP 601 B1 1 HETATM 41 H HN61 ATP . . . SB 32 372.075 193.495 250.58 1 49.66 ? HN61 ATP 601 B1 1 HETATM 42 H HN62 ATP . . . SB 32 371.746 193.423 248.868 1 49.66 ? HN62 ATP 601 B1 1 HETATM 43 H H2 ATP . . . SB 32 370.386 189.267 247.943 1 49.66 ? H2 ATP 601 B1 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 480 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #