data_8APV # _model_server_result.job_id 0CDpe3sVas4Uvh24CBe32g _model_server_result.datetime_utc '2024-10-12 15:22:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8apv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 8APV # _exptl.entry_id 8APV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 280.324 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[[4-(aminomethyl)phenyl]methyl]pyrrolo[2,3-b]pyridine-5-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8APV _cell.length_a 94.63 _cell.length_b 94.63 _cell.length_c 178.015 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8APV _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H16 N4 O' _chem_comp.formula_weight 280.324 _chem_comp.id NLL _chem_comp.mon_nstd_flag . _chem_comp.name 1-[[4-(aminomethyl)phenyl]methyl]pyrrolo[2,3-b]pyridine-5-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C1 NLL sing 257 n n C1 C2 NLL sing 258 n n C2 C16 NLL doub 259 n y C2 C3 NLL sing 260 n y C16 C15 NLL sing 261 n y C3 C4 NLL doub 262 n y C15 C5 NLL doub 263 n y C4 C5 NLL sing 264 n y C5 C6 NLL sing 265 n n C7 C8 NLL doub 266 n y C7 N2 NLL sing 267 n y C8 C9 NLL sing 268 n y C6 N2 NLL sing 269 n n N2 C10 NLL sing 270 n y C9 C10 NLL doub 271 n y C9 C13 NLL sing 272 n y C10 N3 NLL sing 273 n y C13 C12 NLL doub 274 n y N3 C11 NLL doub 275 n y C12 C11 NLL sing 276 n y C12 C14 NLL sing 277 n n O1 C14 NLL doub 278 n n C14 N4 NLL sing 279 n n N1 H1 NLL sing 280 n n N1 H2 NLL sing 281 n n C3 H5 NLL sing 282 n n C4 H6 NLL sing 283 n n C6 H7 NLL sing 284 n n C6 H8 NLL sing 285 n n C7 H9 NLL sing 286 n n C13 H12 NLL sing 287 n n C15 H15 NLL sing 288 n n C16 H16 NLL sing 289 n n C1 H3 NLL sing 290 n n C1 H4 NLL sing 291 n n C8 H10 NLL sing 292 n n C11 H11 NLL sing 293 n n N4 H14 NLL sing 294 n n N4 H13 NLL sing 295 n n # _atom_sites.entry_id 8APV _atom_sites.fract_transf_matrix[1][1] 0.010567 _atom_sites.fract_transf_matrix[1][2] 0.006101 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012202 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005618 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NLL A 1 301 301 NLL 027 . C 3 CIT A 1 302 401 CIT CIT . D 4 HOH A 1 401 150 HOH HOH . D 4 HOH A 2 402 156 HOH HOH . D 4 HOH A 3 403 154 HOH HOH . D 4 HOH A 4 404 40 HOH HOH . D 4 HOH A 5 405 130 HOH HOH . D 4 HOH A 6 406 136 HOH HOH . D 4 HOH A 7 407 157 HOH HOH . D 4 HOH A 8 408 133 HOH HOH . D 4 HOH A 9 409 134 HOH HOH . D 4 HOH A 10 410 141 HOH HOH . D 4 HOH A 11 411 10 HOH HOH . D 4 HOH A 12 412 125 HOH HOH . D 4 HOH A 13 413 22 HOH HOH . D 4 HOH A 14 414 144 HOH HOH . D 4 HOH A 15 415 1 HOH HOH . D 4 HOH A 16 416 4 HOH HOH . D 4 HOH A 17 417 138 HOH HOH . D 4 HOH A 18 418 11 HOH HOH . D 4 HOH A 19 419 153 HOH HOH . D 4 HOH A 20 420 145 HOH HOH . D 4 HOH A 21 421 131 HOH HOH . D 4 HOH A 22 422 147 HOH HOH . D 4 HOH A 23 423 27 HOH HOH . D 4 HOH A 24 424 41 HOH HOH . D 4 HOH A 25 425 20 HOH HOH . D 4 HOH A 26 426 6 HOH HOH . D 4 HOH A 27 427 88 HOH HOH . D 4 HOH A 28 428 117 HOH HOH . D 4 HOH A 29 429 57 HOH HOH . D 4 HOH A 30 430 23 HOH HOH . D 4 HOH A 31 431 7 HOH HOH . D 4 HOH A 32 432 42 HOH HOH . D 4 HOH A 33 433 139 HOH HOH . D 4 HOH A 34 434 143 HOH HOH . D 4 HOH A 35 435 122 HOH HOH . D 4 HOH A 36 436 25 HOH HOH . D 4 HOH A 37 437 152 HOH HOH . D 4 HOH A 38 438 121 HOH HOH . D 4 HOH A 39 439 36 HOH HOH . D 4 HOH A 40 440 135 HOH HOH . D 4 HOH A 41 441 5 HOH HOH . D 4 HOH A 42 442 158 HOH HOH . D 4 HOH A 43 443 63 HOH HOH . D 4 HOH A 44 444 155 HOH HOH . D 4 HOH A 45 445 28 HOH HOH . D 4 HOH A 46 446 44 HOH HOH . D 4 HOH A 47 447 29 HOH HOH . D 4 HOH A 48 448 37 HOH HOH . D 4 HOH A 49 449 132 HOH HOH . D 4 HOH A 50 450 16 HOH HOH . D 4 HOH A 51 451 21 HOH HOH . D 4 HOH A 52 452 140 HOH HOH . D 4 HOH A 53 453 123 HOH HOH . D 4 HOH A 54 454 8 HOH HOH . D 4 HOH A 55 455 38 HOH HOH . D 4 HOH A 56 456 127 HOH HOH . D 4 HOH A 57 457 54 HOH HOH . D 4 HOH A 58 458 3 HOH HOH . D 4 HOH A 59 459 19 HOH HOH . D 4 HOH A 60 460 14 HOH HOH . D 4 HOH A 61 461 33 HOH HOH . D 4 HOH A 62 462 137 HOH HOH . D 4 HOH A 63 463 64 HOH HOH . D 4 HOH A 64 464 51 HOH HOH . D 4 HOH A 65 465 9 HOH HOH . D 4 HOH A 66 466 15 HOH HOH . D 4 HOH A 67 467 65 HOH HOH . D 4 HOH A 68 468 124 HOH HOH . D 4 HOH A 69 469 56 HOH HOH . D 4 HOH A 70 470 53 HOH HOH . D 4 HOH A 71 471 146 HOH HOH . D 4 HOH A 72 472 151 HOH HOH . D 4 HOH A 73 473 67 HOH HOH . D 4 HOH A 74 474 110 HOH HOH . D 4 HOH A 75 475 108 HOH HOH . D 4 HOH A 76 476 43 HOH HOH . D 4 HOH A 77 477 142 HOH HOH . D 4 HOH A 78 478 48 HOH HOH . D 4 HOH A 79 479 30 HOH HOH . D 4 HOH A 80 480 76 HOH HOH . D 4 HOH A 81 481 2 HOH HOH . D 4 HOH A 82 482 24 HOH HOH . D 4 HOH A 83 483 32 HOH HOH . D 4 HOH A 84 484 149 HOH HOH . D 4 HOH A 85 485 45 HOH HOH . D 4 HOH A 86 486 78 HOH HOH . D 4 HOH A 87 487 148 HOH HOH . D 4 HOH A 88 488 126 HOH HOH . D 4 HOH A 89 489 120 HOH HOH . D 4 HOH A 90 490 129 HOH HOH . D 4 HOH A 91 491 128 HOH HOH . D 4 HOH A 92 492 119 HOH HOH . D 4 HOH A 93 493 66 HOH HOH . D 4 HOH A 94 494 118 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 NLL . . . B 2 -15.641 45.668 -14.553 1 35.95 0 N1 NLL 301 A 1 HETATM 2 N N2 NLL . . . B 2 -17.899 40.532 -9.945 1 21.9 0 N2 NLL 301 A 1 HETATM 3 C C3 NLL . . . B 2 -15.042 43.941 -11.908 1 27.18 0 C3 NLL 301 A 1 HETATM 4 C C4 NLL . . . B 2 -15.142 42.747 -11.19 1 26.76 0 C4 NLL 301 A 1 HETATM 5 C C5 NLL . . . B 2 -16.372 42.133 -11.015 1 22.81 0 C5 NLL 301 A 1 HETATM 6 C C6 NLL . . . B 2 -16.503 40.863 -10.22 1 22.87 0 C6 NLL 301 A 1 HETATM 7 C C7 NLL . . . B 2 -18.603 39.607 -10.678 1 22.77 0 C7 NLL 301 A 1 HETATM 8 C C9 NLL . . . B 2 -20.017 40.419 -9.137 1 20.77 0 C9 NLL 301 A 1 HETATM 9 C C13 NLL . . . B 2 -21.048 40.745 -8.268 1 19 0 C13 NLL 301 A 1 HETATM 10 C C14 NLL . . . B 2 -21.971 42.033 -6.441 1 18.69 0 C14 NLL 301 A 1 HETATM 11 C C15 NLL . . . B 2 -17.49 42.726 -11.583 1 24.42 0 C15 NLL 301 A 1 HETATM 12 C C16 NLL . . . B 2 -17.402 43.92 -12.281 1 24.21 0 C16 NLL 301 A 1 HETATM 13 C C1 NLL . . . B 2 -16.115 45.866 -13.182 1 30.78 0 C1 NLL 301 A 1 HETATM 14 C C2 NLL . . . B 2 -16.181 44.555 -12.435 1 29.13 0 C2 NLL 301 A 1 HETATM 15 C C8 NLL . . . B 2 -19.878 39.522 -10.232 1 22.84 0 C8 NLL 301 A 1 HETATM 16 C C10 NLL . . . B 2 -18.766 41.042 -8.961 1 21.15 0 C10 NLL 301 A 1 HETATM 17 N N3 NLL . . . B 2 -18.495 41.945 -8.007 1 18.86 0 N3 NLL 301 A 1 HETATM 18 C C11 NLL . . . B 2 -19.522 42.279 -7.237 1 19.93 0 C11 NLL 301 A 1 HETATM 19 C C12 NLL . . . B 2 -20.815 41.719 -7.329 1 18.12 0 C12 NLL 301 A 1 HETATM 20 N N4 NLL . . . B 2 -21.943 43.154 -5.723 1 18.4 0 N4 NLL 301 A 1 HETATM 21 O O1 NLL . . . B 2 -22.954 41.282 -6.469 1 16.22 0 O1 NLL 301 A 1 HETATM 22 H H1 NLL . . . B 2 -15.487 46.559 -14.891 1 34.27 0 H1 NLL 301 A 1 HETATM 23 H H2 NLL . . . B 2 -14.778 45.245 -14.462 1 34.24 0 H2 NLL 301 A 1 HETATM 24 H H5 NLL . . . B 2 -14.205 44.363 -11.993 1 27.31 0 H5 NLL 301 A 1 HETATM 25 H H6 NLL . . . B 2 -14.37 42.363 -10.812 1 25.87 0 H6 NLL 301 A 1 HETATM 26 H H7 NLL . . . B 2 -16.027 40.962 -9.373 1 22.6 0 H7 NLL 301 A 1 HETATM 27 H H8 NLL . . . B 2 -16.091 40.128 -10.717 1 22.62 0 H8 NLL 301 A 1 HETATM 28 H H9 NLL . . . B 2 -18.248 39.129 -11.392 1 22.29 0 H9 NLL 301 A 1 HETATM 29 H H12 NLL . . . B 2 -21.903 40.36 -8.368 1 19.38 0 H12 NLL 301 A 1 HETATM 30 H H15 NLL . . . B 2 -18.335 42.33 -11.461 1 24.18 0 H15 NLL 301 A 1 HETATM 31 H H16 NLL . . . B 2 -18.181 44.315 -12.633 1 25.39 0 H16 NLL 301 A 1 HETATM 32 H H3 NLL . . . B 2 -17 46.295 -13.227 1 31.48 0 H3 NLL 301 A 1 HETATM 33 H H4 NLL . . . B 2 -15.497 46.493 -12.74 1 31.51 0 H4 NLL 301 A 1 HETATM 34 H H10 NLL . . . B 2 -20.545 38.953 -10.574 1 22.07 0 H10 NLL 301 A 1 HETATM 35 H H11 NLL . . . B 2 -19.371 42.918 -6.56 1 19.44 0 H11 NLL 301 A 1 HETATM 36 H H14 NLL . . . B 2 -21.183 43.674 -5.735 0 30 0 H14 NLL 301 A 1 HETATM 37 H H13 NLL . . . B 2 -22.605 43.401 -5.213 0 30 0 H13 NLL 301 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 37 #