data_8APV # _model_server_result.job_id lEoo0p_5pah9wGm5z9O1BQ _model_server_result.datetime_utc '2024-10-12 15:27:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8apv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 8APV # _exptl.entry_id 8APV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8APV _cell.length_a 94.63 _cell.length_b 94.63 _cell.length_c 178.015 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8APV _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 8APV _atom_sites.fract_transf_matrix[1][1] 0.010567 _atom_sites.fract_transf_matrix[1][2] 0.006101 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012202 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005618 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NLL A 1 301 301 NLL 027 . C 3 CIT A 1 302 401 CIT CIT . D 4 HOH A 1 401 150 HOH HOH . D 4 HOH A 2 402 156 HOH HOH . D 4 HOH A 3 403 154 HOH HOH . D 4 HOH A 4 404 40 HOH HOH . D 4 HOH A 5 405 130 HOH HOH . D 4 HOH A 6 406 136 HOH HOH . D 4 HOH A 7 407 157 HOH HOH . D 4 HOH A 8 408 133 HOH HOH . D 4 HOH A 9 409 134 HOH HOH . D 4 HOH A 10 410 141 HOH HOH . D 4 HOH A 11 411 10 HOH HOH . D 4 HOH A 12 412 125 HOH HOH . D 4 HOH A 13 413 22 HOH HOH . D 4 HOH A 14 414 144 HOH HOH . D 4 HOH A 15 415 1 HOH HOH . D 4 HOH A 16 416 4 HOH HOH . D 4 HOH A 17 417 138 HOH HOH . D 4 HOH A 18 418 11 HOH HOH . D 4 HOH A 19 419 153 HOH HOH . D 4 HOH A 20 420 145 HOH HOH . D 4 HOH A 21 421 131 HOH HOH . D 4 HOH A 22 422 147 HOH HOH . D 4 HOH A 23 423 27 HOH HOH . D 4 HOH A 24 424 41 HOH HOH . D 4 HOH A 25 425 20 HOH HOH . D 4 HOH A 26 426 6 HOH HOH . D 4 HOH A 27 427 88 HOH HOH . D 4 HOH A 28 428 117 HOH HOH . D 4 HOH A 29 429 57 HOH HOH . D 4 HOH A 30 430 23 HOH HOH . D 4 HOH A 31 431 7 HOH HOH . D 4 HOH A 32 432 42 HOH HOH . D 4 HOH A 33 433 139 HOH HOH . D 4 HOH A 34 434 143 HOH HOH . D 4 HOH A 35 435 122 HOH HOH . D 4 HOH A 36 436 25 HOH HOH . D 4 HOH A 37 437 152 HOH HOH . D 4 HOH A 38 438 121 HOH HOH . D 4 HOH A 39 439 36 HOH HOH . D 4 HOH A 40 440 135 HOH HOH . D 4 HOH A 41 441 5 HOH HOH . D 4 HOH A 42 442 158 HOH HOH . D 4 HOH A 43 443 63 HOH HOH . D 4 HOH A 44 444 155 HOH HOH . D 4 HOH A 45 445 28 HOH HOH . D 4 HOH A 46 446 44 HOH HOH . D 4 HOH A 47 447 29 HOH HOH . D 4 HOH A 48 448 37 HOH HOH . D 4 HOH A 49 449 132 HOH HOH . D 4 HOH A 50 450 16 HOH HOH . D 4 HOH A 51 451 21 HOH HOH . D 4 HOH A 52 452 140 HOH HOH . D 4 HOH A 53 453 123 HOH HOH . D 4 HOH A 54 454 8 HOH HOH . D 4 HOH A 55 455 38 HOH HOH . D 4 HOH A 56 456 127 HOH HOH . D 4 HOH A 57 457 54 HOH HOH . D 4 HOH A 58 458 3 HOH HOH . D 4 HOH A 59 459 19 HOH HOH . D 4 HOH A 60 460 14 HOH HOH . D 4 HOH A 61 461 33 HOH HOH . D 4 HOH A 62 462 137 HOH HOH . D 4 HOH A 63 463 64 HOH HOH . D 4 HOH A 64 464 51 HOH HOH . D 4 HOH A 65 465 9 HOH HOH . D 4 HOH A 66 466 15 HOH HOH . D 4 HOH A 67 467 65 HOH HOH . D 4 HOH A 68 468 124 HOH HOH . D 4 HOH A 69 469 56 HOH HOH . D 4 HOH A 70 470 53 HOH HOH . D 4 HOH A 71 471 146 HOH HOH . D 4 HOH A 72 472 151 HOH HOH . D 4 HOH A 73 473 67 HOH HOH . D 4 HOH A 74 474 110 HOH HOH . D 4 HOH A 75 475 108 HOH HOH . D 4 HOH A 76 476 43 HOH HOH . D 4 HOH A 77 477 142 HOH HOH . D 4 HOH A 78 478 48 HOH HOH . D 4 HOH A 79 479 30 HOH HOH . D 4 HOH A 80 480 76 HOH HOH . D 4 HOH A 81 481 2 HOH HOH . D 4 HOH A 82 482 24 HOH HOH . D 4 HOH A 83 483 32 HOH HOH . D 4 HOH A 84 484 149 HOH HOH . D 4 HOH A 85 485 45 HOH HOH . D 4 HOH A 86 486 78 HOH HOH . D 4 HOH A 87 487 148 HOH HOH . D 4 HOH A 88 488 126 HOH HOH . D 4 HOH A 89 489 120 HOH HOH . D 4 HOH A 90 490 129 HOH HOH . D 4 HOH A 91 491 128 HOH HOH . D 4 HOH A 92 492 119 HOH HOH . D 4 HOH A 93 493 66 HOH HOH . D 4 HOH A 94 494 118 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . C 3 -56.422 47.21 11.756 1 44.63 0 C1 CIT 302 A 1 HETATM 2 O O1 CIT . . . C 3 -56.287 47.437 10.527 1 46.4 0 O1 CIT 302 A 1 HETATM 3 O O2 CIT . . . C 3 -57.505 47.229 12.364 1 38.47 0 O2 CIT 302 A 1 HETATM 4 C C2 CIT . . . C 3 -55.175 46.891 12.551 1 45.29 0 C2 CIT 302 A 1 HETATM 5 C C3 CIT . . . C 3 -54.084 47.962 12.445 1 48.58 0 C3 CIT 302 A 1 HETATM 6 O O7 CIT . . . C 3 -53.641 47.912 11.094 1 41.22 0 O7 CIT 302 A 1 HETATM 7 C C4 CIT . . . C 3 -54.714 49.34 12.761 1 56.05 0 C4 CIT 302 A 1 HETATM 8 C C5 CIT . . . C 3 -53.823 50.583 12.655 1 55.7 0 C5 CIT 302 A 1 HETATM 9 O O3 CIT . . . C 3 -52.668 50.454 12.158 1 49.87 0 O3 CIT 302 A 1 HETATM 10 O O4 CIT . . . C 3 -54.287 51.696 13.068 1 52.2 0 O4 CIT 302 A 1 HETATM 11 C C6 CIT . . . C 3 -52.941 47.619 13.464 1 43.4 0 C6 CIT 302 A 1 HETATM 12 O O5 CIT . . . C 3 -52.223 46.664 13.158 1 41.46 0 O5 CIT 302 A 1 HETATM 13 O O6 CIT . . . C 3 -52.854 48.272 14.553 1 39.36 0 O6 CIT 302 A 1 HETATM 14 H H21 CIT . . . C 3 -54.813 46.038 12.237 1 45.87 0 H21 CIT 302 A 1 HETATM 15 H H22 CIT . . . C 3 -55.423 46.784 13.493 1 45.86 0 H22 CIT 302 A 1 HETATM 16 H HO7 CIT . . . C 3 -52.773 47.783 11.129 0 30 0 HO7 CIT 302 A 1 HETATM 17 H H41 CIT . . . C 3 -55.073 49.307 13.671 1 54.07 0 H41 CIT 302 A 1 HETATM 18 H H42 CIT . . . C 3 -55.474 49.472 12.159 1 54.07 0 H42 CIT 302 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 18 #