data_8APY # _model_server_result.job_id qY9TUL8RI9zrNfVcOF3e8A _model_server_result.datetime_utc '2024-10-19 03:45:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8apy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 8APY # _exptl.entry_id 8APY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8APY _cell.length_a 45.19 _cell.length_b 71.09 _cell.length_c 133.03 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8APY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 22 _struct_conn.ptnr1_auth_asym_id C _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 23 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 96 _struct_conn.ptnr2_auth_asym_id C _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 97 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.051 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 237 n n C10 C9 OLC doub 238 n n C10 C11 OLC sing 239 n n C9 C8 OLC sing 240 n n C17 C16 OLC sing 241 z n C11 C12 OLC sing 242 n n C8 C7 OLC sing 243 n n C24 C22 OLC sing 244 n n C24 O25 OLC sing 245 n n C16 C15 OLC sing 246 n n C12 C13 OLC sing 247 n n C7 C6 OLC sing 248 n n C15 C14 OLC sing 249 n n C13 C14 OLC sing 250 n n C6 C5 OLC sing 251 n n C5 C4 OLC sing 252 n n C4 C3 OLC sing 253 n n C3 C2 OLC sing 254 n n C2 C1 OLC sing 255 n n C21 C22 OLC sing 256 n n C21 O20 OLC sing 257 n n C1 O19 OLC doub 258 n n C1 O20 OLC sing 259 n n C22 O23 OLC sing 260 n n C18 H18 OLC sing 261 n n C18 H18A OLC sing 262 n n C18 H18B OLC sing 263 n n C10 H10 OLC sing 264 n n C9 H9 OLC sing 265 n n C17 H17 OLC sing 266 n n C17 H17A OLC sing 267 n n C11 H11 OLC sing 268 n n C11 H11A OLC sing 269 n n C8 H8 OLC sing 270 n n C8 H8A OLC sing 271 n n C24 H24 OLC sing 272 n n C24 H24A OLC sing 273 n n C16 H16 OLC sing 274 n n C16 H16A OLC sing 275 n n C12 H12 OLC sing 276 n n C12 H12A OLC sing 277 n n C7 H7 OLC sing 278 n n C7 H7A OLC sing 279 n n C15 H15 OLC sing 280 n n C15 H15A OLC sing 281 n n C13 H13 OLC sing 282 n n C13 H13A OLC sing 283 n n C6 H6 OLC sing 284 n n C6 H6A OLC sing 285 n n C14 H14 OLC sing 286 n n C14 H14A OLC sing 287 n n C5 H5 OLC sing 288 n n C5 H5A OLC sing 289 n n C4 H4 OLC sing 290 n n C4 H4A OLC sing 291 n n C3 H3 OLC sing 292 n n C3 H3A OLC sing 293 n n C2 H2 OLC sing 294 n n C2 H2A OLC sing 295 n n C21 H21 OLC sing 296 n n C21 H21A OLC sing 297 n n C22 H22 OLC sing 298 n n O25 HO25 OLC sing 299 n n O23 HO23 OLC sing 300 n n # _atom_sites.entry_id 8APY _atom_sites.fract_transf_matrix[1][1] 0.022129 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014067 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007517 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 OLC A 1 301 301 OLC OLC . D 4 HOH A 1 401 7 HOH HOH . D 4 HOH A 2 402 6 HOH HOH . D 4 HOH A 3 403 5 HOH HOH . D 4 HOH A 4 404 2 HOH HOH . D 4 HOH A 5 405 1 HOH HOH . D 4 HOH A 6 406 11 HOH HOH . E 4 HOH C 1 201 12 HOH HOH . E 4 HOH C 2 202 17 HOH HOH . E 4 HOH C 3 203 16 HOH HOH . E 4 HOH C 4 204 3 HOH HOH . E 4 HOH C 5 205 13 HOH HOH . E 4 HOH C 6 206 4 HOH HOH . E 4 HOH C 7 207 10 HOH HOH . E 4 HOH C 8 208 9 HOH HOH . E 4 HOH C 9 209 8 HOH HOH . E 4 HOH C 10 210 15 HOH HOH . E 4 HOH C 11 211 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . C 3 23.061 -20.976 -33.464 1 56 ? C18 OLC 301 A 1 HETATM 2 C C10 OLC . . . C 3 24.316 -18.096 -25.324 1 85.51 ? C10 OLC 301 A 1 HETATM 3 C C9 OLC . . . C 3 24.623 -18.359 -24.051 1 80.16 ? C9 OLC 301 A 1 HETATM 4 C C17 OLC . . . C 3 22.513 -19.699 -32.796 1 56.24 ? C17 OLC 301 A 1 HETATM 5 C C11 OLC . . . C 3 25.273 -17.491 -26.282 1 72.27 ? C11 OLC 301 A 1 HETATM 6 C C8 OLC . . . C 3 25.965 -18.092 -23.459 1 76.32 ? C8 OLC 301 A 1 HETATM 7 C C24 OLC . . . C 3 29.605 -20.818 -24.641 1 95.81 ? C24 OLC 301 A 1 HETATM 8 C C16 OLC . . . C 3 23.606 -18.928 -32.031 1 51.37 ? C16 OLC 301 A 1 HETATM 9 C C12 OLC . . . C 3 24.759 -17.595 -27.72 1 75.23 ? C12 OLC 301 A 1 HETATM 10 C C7 OLC . . . C 3 25.839 -17.109 -22.279 1 94.52 ? C7 OLC 301 A 1 HETATM 11 C C15 OLC . . . C 3 23.809 -19.529 -30.617 1 78.18 ? C15 OLC 301 A 1 HETATM 12 C C13 OLC . . . C 3 24.848 -19.014 -28.311 1 80.42 ? C13 OLC 301 A 1 HETATM 13 C C6 OLC . . . C 3 26.07 -17.769 -20.904 1 94.6 ? C6 OLC 301 A 1 HETATM 14 C C14 OLC . . . C 3 24.989 -18.88 -29.852 1 58.5 ? C14 OLC 301 A 1 HETATM 15 C C5 OLC . . . C 3 24.774 -18.358 -20.334 1 79.46 ? C5 OLC 301 A 1 HETATM 16 C C4 OLC . . . C 3 24.801 -19.891 -20.35 1 84.31 ? C4 OLC 301 A 1 HETATM 17 C C3 OLC . . . C 3 26.035 -20.438 -19.587 1 99.58 ? C3 OLC 301 A 1 HETATM 18 C C2 OLC . . . C 3 27.044 -21.045 -20.581 1 103.45 ? C2 OLC 301 A 1 HETATM 19 C C21 OLC . . . C 3 29.107 -21.689 -22.348 1 97.99 ? C21 OLC 301 A 1 HETATM 20 C C1 OLC . . . C 3 28.445 -21.217 -20.02 1 107.26 ? C1 OLC 301 A 1 HETATM 21 C C22 OLC . . . C 3 29.71 -20.456 -23.119 1 100.79 ? C22 OLC 301 A 1 HETATM 22 O O19 OLC . . . C 3 28.774 -21.118 -18.853 1 112.52 ? O19 OLC 301 A 1 HETATM 23 O O25 OLC . . . C 3 29.992 -19.683 -25.38 1 89.06 ? O25 OLC 301 A 1 HETATM 24 O O23 OLC . . . C 3 29.064 -19.265 -22.813 1 97.28 ? O23 OLC 301 A 1 HETATM 25 O O20 OLC . . . C 3 29.424 -21.531 -20.965 1 104.16 ? O20 OLC 301 A 1 HETATM 26 H H18 OLC . . . C 3 23.499 -21.663 -32.742 1 67.24 ? H18 OLC 301 A 1 HETATM 27 H H18A OLC . . . C 3 22.285 -21.531 -33.99 1 67.24 ? H18A OLC 301 A 1 HETATM 28 H H18B OLC . . . C 3 23.836 -20.757 -34.196 1 67.24 ? H18B OLC 301 A 1 HETATM 29 H H10 OLC . . . C 3 23.327 -18.321 -25.72 1 102.65 ? H10 OLC 301 A 1 HETATM 30 H H9 OLC . . . C 3 23.885 -18.791 -23.377 1 96.23 ? H9 OLC 301 A 1 HETATM 31 H H17 OLC . . . C 3 22.062 -19.056 -33.551 1 67.52 ? H17 OLC 301 A 1 HETATM 32 H H17A OLC . . . C 3 21.698 -19.96 -32.122 1 67.52 ? H17A OLC 301 A 1 HETATM 33 H H11 OLC . . . C 3 26.242 -17.977 -26.182 1 86.76 ? H11 OLC 301 A 1 HETATM 34 H H11A OLC . . . C 3 25.45 -16.451 -26.01 1 86.76 ? H11A OLC 301 A 1 HETATM 35 H H8 OLC . . . C 3 26.418 -19.031 -23.144 1 91.62 ? H8 OLC 301 A 1 HETATM 36 H H8A OLC . . . C 3 26.631 -17.702 -24.228 1 91.62 ? H8A OLC 301 A 1 HETATM 37 H H24 OLC . . . C 3 30.24 -21.676 -24.855 1 115 ? H24 OLC 301 A 1 HETATM 38 H H24A OLC . . . C 3 28.586 -21.124 -24.873 1 115 ? H24A OLC 301 A 1 HETATM 39 H H16 OLC . . . C 3 24.541 -18.95 -32.589 1 61.69 ? H16 OLC 301 A 1 HETATM 40 H H16A OLC . . . C 3 23.341 -17.874 -31.959 1 61.69 ? H16A OLC 301 A 1 HETATM 41 H H12 OLC . . . C 3 25.316 -16.903 -28.35 1 90.31 ? H12 OLC 301 A 1 HETATM 42 H H12A OLC . . . C 3 23.727 -17.25 -27.756 1 90.31 ? H12A OLC 301 A 1 HETATM 43 H H7 OLC . . . C 3 24.854 -16.646 -22.304 1 113.47 ? H7 OLC 301 A 1 HETATM 44 H H7A OLC . . . C 3 26.545 -16.292 -22.418 1 113.47 ? H7A OLC 301 A 1 HETATM 45 H H15 OLC . . . C 3 22.894 -19.418 -30.037 1 93.85 ? H15 OLC 301 A 1 HETATM 46 H H15A OLC . . . C 3 23.97 -20.603 -30.694 1 93.85 ? H15A OLC 301 A 1 HETATM 47 H H13 OLC . . . C 3 25.69 -19.559 -27.888 1 96.54 ? H13 OLC 301 A 1 HETATM 48 H H13A OLC . . . C 3 23.967 -19.599 -28.05 1 96.54 ? H13A OLC 301 A 1 HETATM 49 H H6 OLC . . . C 3 26.827 -18.548 -20.986 1 113.55 ? H6 OLC 301 A 1 HETATM 50 H H6A OLC . . . C 3 26.486 -17.043 -20.207 1 113.55 ? H6A OLC 301 A 1 HETATM 51 H H14 OLC . . . C 3 25.069 -17.829 -30.124 1 70.23 ? H14 OLC 301 A 1 HETATM 52 H H14A OLC . . . C 3 25.927 -19.331 -30.175 1 70.23 ? H14A OLC 301 A 1 HETATM 53 H H5 OLC . . . C 3 24.617 -17.999 -19.318 1 95.39 ? H5 OLC 301 A 1 HETATM 54 H H5A OLC . . . C 3 23.919 -17.994 -20.901 1 95.39 ? H5A OLC 301 A 1 HETATM 55 H H4 OLC . . . C 3 24.804 -20.254 -21.377 1 101.21 ? H4 OLC 301 A 1 HETATM 56 H H4A OLC . . . C 3 23.885 -20.285 -19.911 1 101.21 ? H4A OLC 301 A 1 HETATM 57 H H3 OLC . . . C 3 26.51 -19.647 -19.009 1 119.54 ? H3 OLC 301 A 1 HETATM 58 H H3A OLC . . . C 3 25.735 -21.186 -18.855 1 119.54 ? H3A OLC 301 A 1 HETATM 59 H H2 OLC . . . C 3 27.115 -20.429 -21.477 1 124.18 ? H2 OLC 301 A 1 HETATM 60 H H2A OLC . . . C 3 26.7 -22.019 -20.927 1 124.18 ? H2A OLC 301 A 1 HETATM 61 H H21 OLC . . . C 3 28.027 -21.742 -22.48 1 117.63 ? H21 OLC 301 A 1 HETATM 62 H H21A OLC . . . C 3 29.521 -22.624 -22.722 1 117.63 ? H21A OLC 301 A 1 HETATM 63 H H22 OLC . . . C 3 30.731 -20.242 -22.807 1 120.98 ? H22 OLC 301 A 1 HETATM 64 H HO25 OLC . . . C 3 29.608 -18.892 -24.917 1 106.9 ? HO25 OLC 301 A 1 HETATM 65 H HO23 OLC . . . C 3 28.476 -19.018 -23.574 1 116.77 ? HO23 OLC 301 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 65 #