data_8AQ2 # _model_server_result.job_id wj-_XWM-bCgfeb85l53BcQ _model_server_result.datetime_utc '2024-11-08 11:45:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8aq2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":612}' # _entry.id 8AQ2 # _exptl.entry_id 8AQ2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 243.452 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-tridecylmethanethioamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8AQ2 _cell.length_a 78.06 _cell.length_b 116.23 _cell.length_c 73.22 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AQ2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 L N N ? 3 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 133 A CYS 113 1_555 M C01 QGT . A QGT 612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.474 ? covale ? covale2 A SG CYS 402 A CYS 382 1_555 L C01 QGT . A QGT 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 ? # _chem_comp.formula 'C14 H29 N S' _chem_comp.formula_weight 243.452 _chem_comp.id QGT _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-tridecylmethanethioamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Tetradecyl-1-isothiocyanate (reacted form);TITC (reacted form)' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 S02 QGT doub 371 n n C01 N03 QGT sing 372 n n N03 C04 QGT sing 373 n n C04 C05 QGT sing 374 n n C05 C06 QGT sing 375 n n C06 C07 QGT sing 376 n n C07 C08 QGT sing 377 n n C08 C09 QGT sing 378 n n C09 C10 QGT sing 379 n n C10 C11 QGT sing 380 n n C11 C12 QGT sing 381 n n C12 C13 QGT sing 382 n n C13 C14 QGT sing 383 n n C14 C15 QGT sing 384 n n C15 C16 QGT sing 385 n n C10 H1 QGT sing 386 n n C10 H2 QGT sing 387 n n C12 H3 QGT sing 388 n n C12 H4 QGT sing 389 n n C11 H5 QGT sing 390 n n C11 H6 QGT sing 391 n n C01 H7 QGT sing 392 n n C04 H8 QGT sing 393 n n C04 H9 QGT sing 394 n n C05 H10 QGT sing 395 n n C05 H11 QGT sing 396 n n C06 H12 QGT sing 397 n n C06 H13 QGT sing 398 n n C07 H14 QGT sing 399 n n C07 H15 QGT sing 400 n n C08 H16 QGT sing 401 n n C08 H17 QGT sing 402 n n C09 H18 QGT sing 403 n n C09 H19 QGT sing 404 n n C13 H20 QGT sing 405 n n C13 H21 QGT sing 406 n n C14 H22 QGT sing 407 n n C14 H23 QGT sing 408 n n C15 H24 QGT sing 409 n n C15 H25 QGT sing 410 n n C16 H26 QGT sing 411 n n C16 H27 QGT sing 412 n n C16 H28 QGT sing 413 n n N03 H29 QGT sing 414 n n # _atom_sites.entry_id 8AQ2 _atom_sites.fract_transf_matrix[1][1] 0.012811 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008604 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013657 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OLC A 1 601 601 OLC OLC . C 2 OLC A 1 602 602 OLC OLC . D 2 OLC A 1 603 603 OLC OLC . E 2 OLC A 1 604 604 OLC OLC . F 2 OLC A 1 605 605 OLC OLC . G 2 OLC A 1 606 606 OLC OLC . H 2 OLC A 1 607 607 OLC OLC . I 2 OLC A 1 608 608 OLC OLC . J 2 OLC A 1 609 609 OLC OLC . K 2 OLC A 1 610 610 OLC OLC . L 3 QGT A 1 611 611 QGT QGT . M 3 QGT A 1 612 612 QGT QGT . N 4 FLC A 1 613 613 FLC FLC . O 5 GOL A 1 614 614 GOL GOL . P 5 GOL A 1 615 615 GOL GOL . Q 5 GOL A 1 616 616 GOL GOL . R 5 GOL A 1 617 617 GOL GOL . S 5 GOL A 1 618 618 GOL GOL . T 5 GOL A 1 619 619 GOL GOL . U 5 GOL A 1 620 620 GOL GOL . V 6 HOH A 1 701 701 HOH HOH . V 6 HOH A 2 702 702 HOH HOH . V 6 HOH A 3 703 703 HOH HOH . V 6 HOH A 4 704 704 HOH HOH . V 6 HOH A 5 705 705 HOH HOH . V 6 HOH A 6 706 706 HOH HOH . V 6 HOH A 7 707 707 HOH HOH . V 6 HOH A 8 708 708 HOH HOH . V 6 HOH A 9 709 709 HOH HOH . V 6 HOH A 10 710 710 HOH HOH . V 6 HOH A 11 711 711 HOH HOH . V 6 HOH A 12 712 712 HOH HOH . V 6 HOH A 13 713 713 HOH HOH . V 6 HOH A 14 714 714 HOH HOH . V 6 HOH A 15 715 715 HOH HOH . V 6 HOH A 16 716 716 HOH HOH . V 6 HOH A 17 717 717 HOH HOH . V 6 HOH A 18 718 718 HOH HOH . V 6 HOH A 19 719 719 HOH HOH . V 6 HOH A 20 720 720 HOH HOH . V 6 HOH A 21 721 721 HOH HOH . V 6 HOH A 22 722 722 HOH HOH . V 6 HOH A 23 723 723 HOH HOH . V 6 HOH A 24 724 724 HOH HOH . V 6 HOH A 25 725 725 HOH HOH . V 6 HOH A 26 726 726 HOH HOH . V 6 HOH A 27 727 727 HOH HOH . V 6 HOH A 28 728 728 HOH HOH . V 6 HOH A 29 729 729 HOH HOH . V 6 HOH A 30 730 730 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 QGT . . . M 3 -19.909 23.9 9.789 1 107.98 ? C01 QGT 612 A 1 HETATM 2 C C04 QGT . . . M 3 -21.357 24.766 7.916 1 101.21 ? C04 QGT 612 A 1 HETATM 3 C C05 QGT . . . M 3 -21.313 23.574 6.964 1 95.26 ? C05 QGT 612 A 1 HETATM 4 C C06 QGT . . . M 3 -21.84 23.939 5.579 1 89.73 ? C06 QGT 612 A 1 HETATM 5 C C07 QGT . . . M 3 -22.252 22.706 4.78 1 87.05 ? C07 QGT 612 A 1 HETATM 6 C C08 QGT . . . M 3 -21.236 22.352 3.698 1 84.52 ? C08 QGT 612 A 1 HETATM 7 N N03 QGT . . . M 3 -20.138 24.841 8.707 1 104.96 ? N03 QGT 612 A 1 HETATM 8 S S02 QGT . . . M 3 -20.896 23.834 11.036 1 111.19 ? S02 QGT 612 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #