data_8AQ2 # _model_server_result.job_id bWqrW3qV6f6yl-1KfAlqCA _model_server_result.datetime_utc '2024-11-08 12:03:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8aq2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":619}' # _entry.id 8AQ2 # _exptl.entry_id 8AQ2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8AQ2 _cell.length_a 78.06 _cell.length_b 116.23 _cell.length_c 73.22 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AQ2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 O N N ? 5 P N N ? 5 Q N N ? 5 R N N ? 5 S N N ? 5 T N N ? 5 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 133 A CYS 113 1_555 M C01 QGT . A QGT 612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.474 ? covale ? covale2 A SG CYS 402 A CYS 382 1_555 L C01 QGT . A QGT 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 146 n n C1 C2 GOL sing 147 n n C1 H11 GOL sing 148 n n C1 H12 GOL sing 149 n n O1 HO1 GOL sing 150 n n C2 O2 GOL sing 151 n n C2 C3 GOL sing 152 n n C2 H2 GOL sing 153 n n O2 HO2 GOL sing 154 n n C3 O3 GOL sing 155 n n C3 H31 GOL sing 156 n n C3 H32 GOL sing 157 n n O3 HO3 GOL sing 158 n n # _atom_sites.entry_id 8AQ2 _atom_sites.fract_transf_matrix[1][1] 0.012811 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008604 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013657 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OLC A 1 601 601 OLC OLC . C 2 OLC A 1 602 602 OLC OLC . D 2 OLC A 1 603 603 OLC OLC . E 2 OLC A 1 604 604 OLC OLC . F 2 OLC A 1 605 605 OLC OLC . G 2 OLC A 1 606 606 OLC OLC . H 2 OLC A 1 607 607 OLC OLC . I 2 OLC A 1 608 608 OLC OLC . J 2 OLC A 1 609 609 OLC OLC . K 2 OLC A 1 610 610 OLC OLC . L 3 QGT A 1 611 611 QGT QGT . M 3 QGT A 1 612 612 QGT QGT . N 4 FLC A 1 613 613 FLC FLC . O 5 GOL A 1 614 614 GOL GOL . P 5 GOL A 1 615 615 GOL GOL . Q 5 GOL A 1 616 616 GOL GOL . R 5 GOL A 1 617 617 GOL GOL . S 5 GOL A 1 618 618 GOL GOL . T 5 GOL A 1 619 619 GOL GOL . U 5 GOL A 1 620 620 GOL GOL . V 6 HOH A 1 701 701 HOH HOH . V 6 HOH A 2 702 702 HOH HOH . V 6 HOH A 3 703 703 HOH HOH . V 6 HOH A 4 704 704 HOH HOH . V 6 HOH A 5 705 705 HOH HOH . V 6 HOH A 6 706 706 HOH HOH . V 6 HOH A 7 707 707 HOH HOH . V 6 HOH A 8 708 708 HOH HOH . V 6 HOH A 9 709 709 HOH HOH . V 6 HOH A 10 710 710 HOH HOH . V 6 HOH A 11 711 711 HOH HOH . V 6 HOH A 12 712 712 HOH HOH . V 6 HOH A 13 713 713 HOH HOH . V 6 HOH A 14 714 714 HOH HOH . V 6 HOH A 15 715 715 HOH HOH . V 6 HOH A 16 716 716 HOH HOH . V 6 HOH A 17 717 717 HOH HOH . V 6 HOH A 18 718 718 HOH HOH . V 6 HOH A 19 719 719 HOH HOH . V 6 HOH A 20 720 720 HOH HOH . V 6 HOH A 21 721 721 HOH HOH . V 6 HOH A 22 722 722 HOH HOH . V 6 HOH A 23 723 723 HOH HOH . V 6 HOH A 24 724 724 HOH HOH . V 6 HOH A 25 725 725 HOH HOH . V 6 HOH A 26 726 726 HOH HOH . V 6 HOH A 27 727 727 HOH HOH . V 6 HOH A 28 728 728 HOH HOH . V 6 HOH A 29 729 729 HOH HOH . V 6 HOH A 30 730 730 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . T 5 7.595 11.528 13.887 1 106.15 ? C1 GOL 619 A 1 HETATM 2 O O1 GOL . . . T 5 7.687 10.465 14.81 1 105.07 ? O1 GOL 619 A 1 HETATM 3 C C2 GOL . . . T 5 8.3 11.15 12.602 1 106.29 ? C2 GOL 619 A 1 HETATM 4 O O2 GOL . . . T 5 7.659 10.035 12.026 1 106.53 ? O2 GOL 619 A 1 HETATM 5 C C3 GOL . . . T 5 8.263 12.319 11.64 1 104.93 ? C3 GOL 619 A 1 HETATM 6 O O3 GOL . . . T 5 8.993 12.018 10.471 1 107.06 ? O3 GOL 619 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 234 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #