data_8AQ3 # _model_server_result.job_id y7gtzaCxiyHVDthheDZvpw _model_server_result.datetime_utc '2024-11-27 02:56:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8aq3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 8AQ3 # _exptl.entry_id 8AQ3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 717.996 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8AQ3 _cell.length_a 160.994 _cell.length_b 160.994 _cell.length_c 91.282 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AQ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 U N N # _chem_comp.formula 'C39 H76 N O8 P' _chem_comp.formula_weight 717.996 _chem_comp.id 6OU _chem_comp.mon_nstd_flag . _chem_comp.name '[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C48 C47 6OU sing 1 n n C48 C49 6OU sing 2 n n C47 C46 6OU sing 3 n n C41 C40 6OU doub 4 z n C41 C42 6OU sing 5 n n C40 C39 6OU sing 6 n n C27 C28 6OU sing 7 n n C27 O26 6OU sing 8 n n C28 N29 6OU sing 9 n n C01 C02 6OU sing 10 n n C42 C43 6OU sing 11 n n C02 C03 6OU sing 12 n n C45 C46 6OU sing 13 n n C45 C44 6OU sing 14 n n C39 C38 6OU sing 15 n n C33 C34 6OU sing 16 n n C33 C31 6OU sing 17 n n C44 C43 6OU sing 18 n n O26 P23 6OU sing 19 n n O24 P23 6OU doub 20 n n C35 C34 6OU sing 21 n n C35 C36 6OU sing 22 n n C38 C37 6OU sing 23 n n C36 C37 6OU sing 24 n n C31 O30 6OU sing 25 n n C31 O32 6OU doub 26 n n O22 P23 6OU sing 27 n n O22 C21 6OU sing 28 n n O30 C20 6OU sing 29 n n P23 O25 6OU sing 30 n n C03 C04 6OU sing 31 n n C04 C05 6OU sing 32 n n C19 C20 6OU sing 33 n n C19 O18 6OU sing 34 n n C21 C20 6OU sing 35 n n C15 C14 6OU sing 36 n n C15 C16 6OU sing 37 n n O18 C16 6OU sing 38 n n C14 C13 6OU sing 39 n n C05 C06 6OU sing 40 n n C16 O17 6OU doub 41 n n C06 C07 6OU sing 42 n n C11 C10 6OU sing 43 n n C11 C12 6OU sing 44 n n C13 C12 6OU sing 45 n n C10 C09 6OU sing 46 n n C07 C08 6OU sing 47 n n C09 C08 6OU sing 48 n n C01 H1 6OU sing 49 n n C01 H2 6OU sing 50 n n C01 H3 6OU sing 51 n n C02 H4 6OU sing 52 n n C02 H5 6OU sing 53 n n C03 H6 6OU sing 54 n n C03 H7 6OU sing 55 n n C04 H8 6OU sing 56 n n C04 H9 6OU sing 57 n n C05 H10 6OU sing 58 n n C05 H11 6OU sing 59 n n C06 H12 6OU sing 60 n n C06 H13 6OU sing 61 n n C07 H14 6OU sing 62 n n C07 H15 6OU sing 63 n n C08 H16 6OU sing 64 n n C08 H17 6OU sing 65 n n C09 H18 6OU sing 66 n n C09 H19 6OU sing 67 n n C10 H20 6OU sing 68 n n C10 H21 6OU sing 69 n n C11 H22 6OU sing 70 n n C11 H23 6OU sing 71 n n C12 H24 6OU sing 72 n n C12 H25 6OU sing 73 n n C13 H26 6OU sing 74 n n C13 H27 6OU sing 75 n n C14 H28 6OU sing 76 n n C14 H29 6OU sing 77 n n C15 H30 6OU sing 78 n n C15 H31 6OU sing 79 n n C19 H32 6OU sing 80 n n C19 H33 6OU sing 81 n n C20 H34 6OU sing 82 n n C21 H35 6OU sing 83 n n C21 H36 6OU sing 84 n n O25 H37 6OU sing 85 n n C27 H38 6OU sing 86 n n C27 H39 6OU sing 87 n n C28 H40 6OU sing 88 n n C28 H41 6OU sing 89 n n N29 H42 6OU sing 90 n n N29 H43 6OU sing 91 n n C33 H45 6OU sing 92 n n C33 H46 6OU sing 93 n n C34 H47 6OU sing 94 n n C34 H48 6OU sing 95 n n C35 H49 6OU sing 96 n n C35 H50 6OU sing 97 n n C36 H51 6OU sing 98 n n C36 H52 6OU sing 99 n n C37 H53 6OU sing 100 n n C37 H54 6OU sing 101 n n C38 H55 6OU sing 102 n n C38 H56 6OU sing 103 n n C39 H57 6OU sing 104 n n C39 H58 6OU sing 105 n n C40 H59 6OU sing 106 n n C41 H60 6OU sing 107 n n C42 H61 6OU sing 108 n n C42 H62 6OU sing 109 n n C43 H63 6OU sing 110 n n C43 H64 6OU sing 111 n n C44 H65 6OU sing 112 n n C44 H66 6OU sing 113 n n C45 H67 6OU sing 114 n n C45 H68 6OU sing 115 n n C46 H69 6OU sing 116 n n C46 H70 6OU sing 117 n n C47 H71 6OU sing 118 n n C47 H72 6OU sing 119 n n C48 H73 6OU sing 120 n n C48 H74 6OU sing 121 n n C49 H75 6OU sing 122 n n C49 H76 6OU sing 123 n n C49 H77 6OU sing 124 n n # _atom_sites.entry_id 8AQ3 _atom_sites.fract_transf_matrix[1][1] 0.006211 _atom_sites.fract_transf_matrix[1][2] 0.003586 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007172 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010955 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6OU A 1 601 601 6OU 6OU . C 2 6OU A 1 602 602 6OU 6OU . D 3 PG5 A 1 603 603 PG5 PG5 . E 3 PG5 A 1 604 604 PG5 PG5 . F 3 PG5 A 1 605 605 PG5 PG5 . G 3 PG5 A 1 606 606 PG5 PG5 . H 4 PG6 A 1 607 607 PG6 PG6 . I 5 TRS A 1 608 608 TRS TRS . J 6 ACT A 1 609 609 ACT ACT . K 7 GOL A 1 610 610 GOL GOL . L 7 GOL A 1 611 611 GOL GOL . M 8 LMT A 1 612 612 LMT LMT . N 8 LMT A 1 613 613 LMT LMT . O 7 GOL A 1 614 614 GOL GOL . P 7 GOL A 1 615 615 GOL GOL . Q 7 GOL A 1 616 616 GOL GOL . R 8 LMT A 1 617 617 LMT LMT . S 8 LMT A 1 618 618 LMT LMT . T 8 LMT A 1 619 619 LMT LMT . U 2 6OU A 1 620 620 6OU 6OU . V 9 CL A 1 621 621 CL CL . W 9 CL A 1 622 622 CL CL . X 9 CL A 1 623 623 CL CL . Y 10 HOH A 1 701 701 HOH HOH . Y 10 HOH A 2 702 702 HOH HOH . Y 10 HOH A 3 703 703 HOH HOH . Y 10 HOH A 4 704 704 HOH HOH . Y 10 HOH A 5 705 705 HOH HOH . Y 10 HOH A 6 706 706 HOH HOH . Y 10 HOH A 7 707 707 HOH HOH . Y 10 HOH A 8 708 708 HOH HOH . Y 10 HOH A 9 709 709 HOH HOH . Y 10 HOH A 10 710 710 HOH HOH . Y 10 HOH A 11 711 711 HOH HOH . Y 10 HOH A 12 712 712 HOH HOH . Y 10 HOH A 13 713 713 HOH HOH . Y 10 HOH A 14 714 714 HOH HOH . Y 10 HOH A 15 715 715 HOH HOH . Y 10 HOH A 16 716 716 HOH HOH . Y 10 HOH A 17 717 717 HOH HOH . Y 10 HOH A 18 718 718 HOH HOH . Y 10 HOH A 19 719 719 HOH HOH . Y 10 HOH A 20 720 720 HOH HOH . Y 10 HOH A 21 721 721 HOH HOH . Y 10 HOH A 22 722 722 HOH HOH . Y 10 HOH A 23 723 723 HOH HOH . Y 10 HOH A 24 724 724 HOH HOH . Y 10 HOH A 25 725 725 HOH HOH . Y 10 HOH A 26 726 726 HOH HOH . Y 10 HOH A 27 727 727 HOH HOH . Y 10 HOH A 28 728 728 HOH HOH . Y 10 HOH A 29 729 729 HOH HOH . Y 10 HOH A 30 730 730 HOH HOH . Y 10 HOH A 31 731 731 HOH HOH . Y 10 HOH A 32 732 732 HOH HOH . Y 10 HOH A 33 733 733 HOH HOH . Y 10 HOH A 34 734 734 HOH HOH . Y 10 HOH A 35 735 735 HOH HOH . Y 10 HOH A 36 736 736 HOH HOH . Y 10 HOH A 37 737 737 HOH HOH . Y 10 HOH A 38 738 738 HOH HOH . Y 10 HOH A 39 739 739 HOH HOH . Y 10 HOH A 40 740 740 HOH HOH . Y 10 HOH A 41 741 741 HOH HOH . Y 10 HOH A 42 742 742 HOH HOH . Y 10 HOH A 43 743 743 HOH HOH . Y 10 HOH A 44 744 744 HOH HOH . Y 10 HOH A 45 745 745 HOH HOH . Y 10 HOH A 46 746 746 HOH HOH . Y 10 HOH A 47 747 747 HOH HOH . Y 10 HOH A 48 748 748 HOH HOH . Y 10 HOH A 49 749 749 HOH HOH . Y 10 HOH A 50 750 750 HOH HOH . Y 10 HOH A 51 751 751 HOH HOH . Y 10 HOH A 52 752 752 HOH HOH . Y 10 HOH A 53 753 753 HOH HOH . Y 10 HOH A 54 754 754 HOH HOH . Y 10 HOH A 55 755 755 HOH HOH . Y 10 HOH A 56 756 756 HOH HOH . Y 10 HOH A 57 757 757 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 6OU . . . B 2 -47.849 53.203 6.925 1 80.83 ? C01 6OU 601 A 1 HETATM 2 C C02 6OU . . . B 2 -47.62 52.962 8.426 1 81.7 ? C02 6OU 601 A 1 HETATM 3 C C03 6OU . . . B 2 -48.493 51.841 8.97 1 80.58 ? C03 6OU 601 A 1 HETATM 4 C C04 6OU . . . B 2 -49.881 52.325 9.35 1 76.94 ? C04 6OU 601 A 1 HETATM 5 C C05 6OU . . . B 2 -50.119 52.271 10.851 1 76.64 ? C05 6OU 601 A 1 HETATM 6 C C06 6OU . . . B 2 -51.235 51.295 11.226 1 77.05 ? C06 6OU 601 A 1 HETATM 7 C C07 6OU . . . B 2 -51.891 51.648 12.56 1 77.03 ? C07 6OU 601 A 1 HETATM 8 C C08 6OU . . . B 2 -53.412 51.877 12.421 1 78.3 ? C08 6OU 601 A 1 HETATM 9 C C09 6OU . . . B 2 -54.169 51.566 13.722 1 74.33 ? C09 6OU 601 A 1 HETATM 10 C C10 6OU . . . B 2 -55.388 52.491 13.926 1 71.49 ? C10 6OU 601 A 1 HETATM 11 C C11 6OU . . . B 2 -56.464 52.292 12.833 1 75.72 ? C11 6OU 601 A 1 HETATM 12 C C12 6OU . . . B 2 -57.898 52.413 13.392 1 73.31 ? C12 6OU 601 A 1 HETATM 13 C C13 6OU . . . B 2 -58.734 51.13 13.151 1 79.2 ? C13 6OU 601 A 1 HETATM 14 C C14 6OU . . . B 2 -60.073 51.153 13.917 1 72.61 ? C14 6OU 601 A 1 HETATM 15 C C15 6OU . . . B 2 -61.133 50.227 13.277 1 73.25 ? C15 6OU 601 A 1 HETATM 16 C C16 6OU . . . B 2 -60.747 49.798 11.844 1 81.35 ? C16 6OU 601 A 1 HETATM 17 O O17 6OU . . . B 2 -60.586 50.614 11.007 1 83.07 ? O17 6OU 601 A 1 HETATM 18 O O18 6OU . . . B 2 -60.584 48.42 11.533 1 85.98 ? O18 6OU 601 A 1 HETATM 19 C C19 6OU . . . B 2 -60.006 47.659 12.59 1 75.87 ? C19 6OU 601 A 1 HETATM 20 C C20 6OU . . . B 2 -60.252 46.168 12.306 1 78.22 ? C20 6OU 601 A 1 HETATM 21 C C21 6OU . . . B 2 -61.657 45.786 12.816 1 74.15 ? C21 6OU 601 A 1 HETATM 22 O O22 6OU . . . B 2 -61.626 44.701 13.72 1 68.94 ? O22 6OU 601 A 1 HETATM 23 P P23 6OU . . . B 2 -62.296 43.242 13.244 1 79.08 ? P23 6OU 601 A 1 HETATM 24 O O24 6OU . . . B 2 -63.046 42.631 14.405 1 72.56 ? O24 6OU 601 A 1 HETATM 25 O O25 6OU . . . B 2 -63.246 43.474 12.101 1 70.03 ? O25 6OU 601 A 1 HETATM 26 O O26 6OU . . . B 2 -61.089 42.211 12.762 1 84.77 ? O26 6OU 601 A 1 HETATM 27 C C27 6OU . . . B 2 -59.894 42.763 12.261 1 79.98 ? C27 6OU 601 A 1 HETATM 28 C C28 6OU . . . B 2 -59.559 42.065 10.934 1 74.03 ? C28 6OU 601 A 1 HETATM 29 N N29 6OU . . . B 2 -58.516 41.061 11.136 1 77.98 ? N29 6OU 601 A 1 HETATM 30 O O30 6OU . . . B 2 -59.231 45.42 12.9 1 79.6 ? O30 6OU 601 A 1 HETATM 31 C C31 6OU . . . B 2 -57.944 45.907 12.628 1 81.07 ? C31 6OU 601 A 1 HETATM 32 O O32 6OU . . . B 2 -57.457 45.735 11.556 1 110.12 ? O32 6OU 601 A 1 HETATM 33 C C33 6OU . . . B 2 -57.165 46.663 13.713 1 80.53 ? C33 6OU 601 A 1 HETATM 34 C C34 6OU . . . B 2 -55.83 45.985 14.047 1 81.25 ? C34 6OU 601 A 1 HETATM 35 C C35 6OU . . . B 2 -54.685 47.004 14.226 1 80.78 ? C35 6OU 601 A 1 HETATM 36 C C36 6OU . . . B 2 -53.356 46.327 14.561 1 84.56 ? C36 6OU 601 A 1 HETATM 37 C C37 6OU . . . B 2 -52.163 47.302 14.47 1 82.28 ? C37 6OU 601 A 1 HETATM 38 C C38 6OU . . . B 2 -51.959 47.841 13.051 1 79.73 ? C38 6OU 601 A 1 HETATM 39 C C39 6OU . . . B 2 -50.514 48.29 12.802 1 84.09 ? C39 6OU 601 A 1 HETATM 40 C C40 6OU . . . B 2 -49.815 48.526 14.142 1 85.83 ? C40 6OU 601 A 1 HETATM 41 C C41 6OU . . . B 2 -48.49 48.63 14.192 1 88.19 ? C41 6OU 601 A 1 HETATM 42 C C42 6OU . . . B 2 -47.661 48.513 12.908 1 82.47 ? C42 6OU 601 A 1 HETATM 43 C C43 6OU . . . B 2 -46.161 48.627 13.251 1 87.22 ? C43 6OU 601 A 1 HETATM 44 C C44 6OU . . . B 2 -45.314 47.574 12.517 1 82.93 ? C44 6OU 601 A 1 HETATM 45 C C45 6OU . . . B 2 -44.723 48.111 11.208 1 87.59 ? C45 6OU 601 A 1 HETATM 46 C C46 6OU . . . B 2 -44.178 49.538 11.358 1 87.87 ? C46 6OU 601 A 1 HETATM 47 C C47 6OU . . . B 2 -44.257 50.332 10.05 1 91.64 ? C47 6OU 601 A 1 HETATM 48 C C48 6OU . . . B 2 -42.898 50.951 9.658 1 86.68 ? C48 6OU 601 A 1 HETATM 49 C C49 6OU . . . B 2 -42.722 51.056 8.142 1 89.61 ? C49 6OU 601 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 49 #