data_8AQ3 # _model_server_result.job_id J6d92_Jo88jTyVJLjCL-3w _model_server_result.datetime_utc '2024-11-08 22:27:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8aq3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":620}' # _entry.id 8AQ3 # _exptl.entry_id 8AQ3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 717.996 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8AQ3 _cell.length_a 160.994 _cell.length_b 160.994 _cell.length_c 91.282 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AQ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 U N N # _chem_comp.formula 'C39 H76 N O8 P' _chem_comp.formula_weight 717.996 _chem_comp.id 6OU _chem_comp.mon_nstd_flag . _chem_comp.name '[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C48 C47 6OU sing 1 n n C48 C49 6OU sing 2 n n C47 C46 6OU sing 3 n n C41 C40 6OU doub 4 z n C41 C42 6OU sing 5 n n C40 C39 6OU sing 6 n n C27 C28 6OU sing 7 n n C27 O26 6OU sing 8 n n C28 N29 6OU sing 9 n n C01 C02 6OU sing 10 n n C42 C43 6OU sing 11 n n C02 C03 6OU sing 12 n n C45 C46 6OU sing 13 n n C45 C44 6OU sing 14 n n C39 C38 6OU sing 15 n n C33 C34 6OU sing 16 n n C33 C31 6OU sing 17 n n C44 C43 6OU sing 18 n n O26 P23 6OU sing 19 n n O24 P23 6OU doub 20 n n C35 C34 6OU sing 21 n n C35 C36 6OU sing 22 n n C38 C37 6OU sing 23 n n C36 C37 6OU sing 24 n n C31 O30 6OU sing 25 n n C31 O32 6OU doub 26 n n O22 P23 6OU sing 27 n n O22 C21 6OU sing 28 n n O30 C20 6OU sing 29 n n P23 O25 6OU sing 30 n n C03 C04 6OU sing 31 n n C04 C05 6OU sing 32 n n C19 C20 6OU sing 33 n n C19 O18 6OU sing 34 n n C21 C20 6OU sing 35 n n C15 C14 6OU sing 36 n n C15 C16 6OU sing 37 n n O18 C16 6OU sing 38 n n C14 C13 6OU sing 39 n n C05 C06 6OU sing 40 n n C16 O17 6OU doub 41 n n C06 C07 6OU sing 42 n n C11 C10 6OU sing 43 n n C11 C12 6OU sing 44 n n C13 C12 6OU sing 45 n n C10 C09 6OU sing 46 n n C07 C08 6OU sing 47 n n C09 C08 6OU sing 48 n n C01 H1 6OU sing 49 n n C01 H2 6OU sing 50 n n C01 H3 6OU sing 51 n n C02 H4 6OU sing 52 n n C02 H5 6OU sing 53 n n C03 H6 6OU sing 54 n n C03 H7 6OU sing 55 n n C04 H8 6OU sing 56 n n C04 H9 6OU sing 57 n n C05 H10 6OU sing 58 n n C05 H11 6OU sing 59 n n C06 H12 6OU sing 60 n n C06 H13 6OU sing 61 n n C07 H14 6OU sing 62 n n C07 H15 6OU sing 63 n n C08 H16 6OU sing 64 n n C08 H17 6OU sing 65 n n C09 H18 6OU sing 66 n n C09 H19 6OU sing 67 n n C10 H20 6OU sing 68 n n C10 H21 6OU sing 69 n n C11 H22 6OU sing 70 n n C11 H23 6OU sing 71 n n C12 H24 6OU sing 72 n n C12 H25 6OU sing 73 n n C13 H26 6OU sing 74 n n C13 H27 6OU sing 75 n n C14 H28 6OU sing 76 n n C14 H29 6OU sing 77 n n C15 H30 6OU sing 78 n n C15 H31 6OU sing 79 n n C19 H32 6OU sing 80 n n C19 H33 6OU sing 81 n n C20 H34 6OU sing 82 n n C21 H35 6OU sing 83 n n C21 H36 6OU sing 84 n n O25 H37 6OU sing 85 n n C27 H38 6OU sing 86 n n C27 H39 6OU sing 87 n n C28 H40 6OU sing 88 n n C28 H41 6OU sing 89 n n N29 H42 6OU sing 90 n n N29 H43 6OU sing 91 n n C33 H45 6OU sing 92 n n C33 H46 6OU sing 93 n n C34 H47 6OU sing 94 n n C34 H48 6OU sing 95 n n C35 H49 6OU sing 96 n n C35 H50 6OU sing 97 n n C36 H51 6OU sing 98 n n C36 H52 6OU sing 99 n n C37 H53 6OU sing 100 n n C37 H54 6OU sing 101 n n C38 H55 6OU sing 102 n n C38 H56 6OU sing 103 n n C39 H57 6OU sing 104 n n C39 H58 6OU sing 105 n n C40 H59 6OU sing 106 n n C41 H60 6OU sing 107 n n C42 H61 6OU sing 108 n n C42 H62 6OU sing 109 n n C43 H63 6OU sing 110 n n C43 H64 6OU sing 111 n n C44 H65 6OU sing 112 n n C44 H66 6OU sing 113 n n C45 H67 6OU sing 114 n n C45 H68 6OU sing 115 n n C46 H69 6OU sing 116 n n C46 H70 6OU sing 117 n n C47 H71 6OU sing 118 n n C47 H72 6OU sing 119 n n C48 H73 6OU sing 120 n n C48 H74 6OU sing 121 n n C49 H75 6OU sing 122 n n C49 H76 6OU sing 123 n n C49 H77 6OU sing 124 n n # _atom_sites.entry_id 8AQ3 _atom_sites.fract_transf_matrix[1][1] 0.006211 _atom_sites.fract_transf_matrix[1][2] 0.003586 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007172 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010955 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6OU A 1 601 601 6OU 6OU . C 2 6OU A 1 602 602 6OU 6OU . D 3 PG5 A 1 603 603 PG5 PG5 . E 3 PG5 A 1 604 604 PG5 PG5 . F 3 PG5 A 1 605 605 PG5 PG5 . G 3 PG5 A 1 606 606 PG5 PG5 . H 4 PG6 A 1 607 607 PG6 PG6 . I 5 TRS A 1 608 608 TRS TRS . J 6 ACT A 1 609 609 ACT ACT . K 7 GOL A 1 610 610 GOL GOL . L 7 GOL A 1 611 611 GOL GOL . M 8 LMT A 1 612 612 LMT LMT . N 8 LMT A 1 613 613 LMT LMT . O 7 GOL A 1 614 614 GOL GOL . P 7 GOL A 1 615 615 GOL GOL . Q 7 GOL A 1 616 616 GOL GOL . R 8 LMT A 1 617 617 LMT LMT . S 8 LMT A 1 618 618 LMT LMT . T 8 LMT A 1 619 619 LMT LMT . U 2 6OU A 1 620 620 6OU 6OU . V 9 CL A 1 621 621 CL CL . W 9 CL A 1 622 622 CL CL . X 9 CL A 1 623 623 CL CL . Y 10 HOH A 1 701 701 HOH HOH . Y 10 HOH A 2 702 702 HOH HOH . Y 10 HOH A 3 703 703 HOH HOH . Y 10 HOH A 4 704 704 HOH HOH . Y 10 HOH A 5 705 705 HOH HOH . Y 10 HOH A 6 706 706 HOH HOH . Y 10 HOH A 7 707 707 HOH HOH . Y 10 HOH A 8 708 708 HOH HOH . Y 10 HOH A 9 709 709 HOH HOH . Y 10 HOH A 10 710 710 HOH HOH . Y 10 HOH A 11 711 711 HOH HOH . Y 10 HOH A 12 712 712 HOH HOH . Y 10 HOH A 13 713 713 HOH HOH . Y 10 HOH A 14 714 714 HOH HOH . Y 10 HOH A 15 715 715 HOH HOH . Y 10 HOH A 16 716 716 HOH HOH . Y 10 HOH A 17 717 717 HOH HOH . Y 10 HOH A 18 718 718 HOH HOH . Y 10 HOH A 19 719 719 HOH HOH . Y 10 HOH A 20 720 720 HOH HOH . Y 10 HOH A 21 721 721 HOH HOH . Y 10 HOH A 22 722 722 HOH HOH . Y 10 HOH A 23 723 723 HOH HOH . Y 10 HOH A 24 724 724 HOH HOH . Y 10 HOH A 25 725 725 HOH HOH . Y 10 HOH A 26 726 726 HOH HOH . Y 10 HOH A 27 727 727 HOH HOH . Y 10 HOH A 28 728 728 HOH HOH . Y 10 HOH A 29 729 729 HOH HOH . Y 10 HOH A 30 730 730 HOH HOH . Y 10 HOH A 31 731 731 HOH HOH . Y 10 HOH A 32 732 732 HOH HOH . Y 10 HOH A 33 733 733 HOH HOH . Y 10 HOH A 34 734 734 HOH HOH . Y 10 HOH A 35 735 735 HOH HOH . Y 10 HOH A 36 736 736 HOH HOH . Y 10 HOH A 37 737 737 HOH HOH . Y 10 HOH A 38 738 738 HOH HOH . Y 10 HOH A 39 739 739 HOH HOH . Y 10 HOH A 40 740 740 HOH HOH . Y 10 HOH A 41 741 741 HOH HOH . Y 10 HOH A 42 742 742 HOH HOH . Y 10 HOH A 43 743 743 HOH HOH . Y 10 HOH A 44 744 744 HOH HOH . Y 10 HOH A 45 745 745 HOH HOH . Y 10 HOH A 46 746 746 HOH HOH . Y 10 HOH A 47 747 747 HOH HOH . Y 10 HOH A 48 748 748 HOH HOH . Y 10 HOH A 49 749 749 HOH HOH . Y 10 HOH A 50 750 750 HOH HOH . Y 10 HOH A 51 751 751 HOH HOH . Y 10 HOH A 52 752 752 HOH HOH . Y 10 HOH A 53 753 753 HOH HOH . Y 10 HOH A 54 754 754 HOH HOH . Y 10 HOH A 55 755 755 HOH HOH . Y 10 HOH A 56 756 756 HOH HOH . Y 10 HOH A 57 757 757 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 6OU . . . U 2 -36.321 69.034 -2.253 1 95.56 ? C01 6OU 620 A 1 HETATM 2 C C02 6OU . . . U 2 -37.298 67.955 -1.754 1 96.62 ? C02 6OU 620 A 1 HETATM 3 C C03 6OU . . . U 2 -38.709 68.494 -1.575 1 100.4 ? C03 6OU 620 A 1 HETATM 4 C C04 6OU . . . U 2 -39.562 67.591 -0.702 1 95.81 ? C04 6OU 620 A 1 HETATM 5 C C05 6OU . . . U 2 -40.101 66.391 -1.465 1 95.09 ? C05 6OU 620 A 1 HETATM 6 C C06 6OU . . . U 2 -40.971 66.804 -2.653 1 102.22 ? C06 6OU 620 A 1 HETATM 7 C C07 6OU . . . U 2 -41.53 65.599 -3.409 1 105.05 ? C07 6OU 620 A 1 HETATM 8 C C08 6OU . . . U 2 -43.009 65.793 -3.808 1 95.82 ? C08 6OU 620 A 1 HETATM 9 C C09 6OU . . . U 2 -43.261 67.158 -4.467 1 91.94 ? C09 6OU 620 A 1 HETATM 10 C C10 6OU . . . U 2 -44.351 67.971 -3.734 1 90.25 ? C10 6OU 620 A 1 HETATM 11 C C11 6OU . . . U 2 -45.698 67.964 -4.495 1 91.27 ? C11 6OU 620 A 1 HETATM 12 C C12 6OU . . . U 2 -46.712 66.974 -3.882 1 88.65 ? C12 6OU 620 A 1 HETATM 13 C C13 6OU . . . U 2 -48.15 67.203 -4.412 1 92.6 ? C13 6OU 620 A 1 HETATM 14 C C14 6OU . . . U 2 -49.114 66.073 -3.993 1 93.32 ? C14 6OU 620 A 1 HETATM 15 C C15 6OU . . . U 2 -50.121 65.717 -5.11 1 101.79 ? C15 6OU 620 A 1 HETATM 16 C C16 6OU . . . U 2 -51.469 66.453 -4.939 1 110.25 ? C16 6OU 620 A 1 HETATM 17 O O17 6OU . . . U 2 -51.492 67.545 -4.492 1 109.67 ? O17 6OU 620 A 1 HETATM 18 O O18 6OU . . . U 2 -52.682 65.814 -5.319 1 121.08 ? O18 6OU 620 A 1 HETATM 19 C C19 6OU . . . U 2 -53.675 65.81 -4.296 1 126.93 ? C19 6OU 620 A 1 HETATM 20 C C20 6OU . . . U 2 -54.693 66.922 -4.604 1 136.97 ? C20 6OU 620 A 1 HETATM 21 C C21 6OU . . . U 2 -55.927 66.792 -3.697 1 134.13 ? C21 6OU 620 A 1 HETATM 22 O O22 6OU . . . U 2 -56.092 65.448 -3.306 1 134.11 ? O22 6OU 620 A 1 HETATM 23 P P23 6OU . . . U 2 -55.741 65.033 -1.723 1 190.53 ? P23 6OU 620 A 1 HETATM 24 O O24 6OU . . . U 2 -54.647 65.934 -1.198 1 131.99 -1 O24 6OU 620 A 1 HETATM 25 O O25 6OU . . . U 2 -56.973 65.199 -0.875 1 147.59 ? O25 6OU 620 A 1 HETATM 26 O O26 6OU . . . U 2 -55.236 63.455 -1.657 1 132 ? O26 6OU 620 A 1 HETATM 27 C C27 6OU . . . U 2 -55.088 62.852 -0.391 1 129.96 ? C27 6OU 620 A 1 HETATM 28 C C28 6OU . . . U 2 -54.74 61.371 -0.599 1 122.71 ? C28 6OU 620 A 1 HETATM 29 N N29 6OU . . . U 2 -53.773 60.931 0.406 1 96.99 ? N29 6OU 620 A 1 HETATM 30 O O30 6OU . . . U 2 -55.084 66.84 -5.94 1 137.06 ? O30 6OU 620 A 1 HETATM 31 C C31 6OU . . . U 2 -55.295 68.089 -6.545 1 118.55 ? C31 6OU 620 A 1 HETATM 32 O O32 6OU . . . U 2 -56.328 68.66 -6.388 1 113.36 ? O32 6OU 620 A 1 HETATM 33 C C33 6OU . . . U 2 -54.193 68.72 -7.406 1 113.33 ? C33 6OU 620 A 1 HETATM 34 C C34 6OU . . . U 2 -53.66 70.025 -6.801 1 109.05 ? C34 6OU 620 A 1 HETATM 35 C C35 6OU . . . U 2 -52.231 70.353 -7.281 1 112.32 ? C35 6OU 620 A 1 HETATM 36 C C36 6OU . . . U 2 -51.412 71.082 -6.215 1 101.25 ? C36 6OU 620 A 1 HETATM 37 C C37 6OU . . . U 2 -49.97 70.543 -6.114 1 94.14 ? C37 6OU 620 A 1 HETATM 38 C C38 6OU . . . U 2 -48.924 71.658 -6.215 1 91.46 ? C38 6OU 620 A 1 HETATM 39 C C39 6OU . . . U 2 -47.742 71.434 -5.264 1 90.81 ? C39 6OU 620 A 1 HETATM 40 C C40 6OU . . . U 2 -47.705 72.557 -4.225 1 93.77 ? C40 6OU 620 A 1 HETATM 41 C C41 6OU . . . U 2 -46.541 72.964 -3.727 1 96.16 ? C41 6OU 620 A 1 HETATM 42 C C42 6OU . . . U 2 -45.236 72.309 -4.193 1 92.88 ? C42 6OU 620 A 1 HETATM 43 C C43 6OU . . . U 2 -44.182 72.405 -3.07 1 94.48 ? C43 6OU 620 A 1 HETATM 44 C C44 6OU . . . U 2 -43.713 73.851 -2.833 1 92.69 ? C44 6OU 620 A 1 HETATM 45 C C45 6OU . . . U 2 -43.318 74.103 -1.372 1 89.32 ? C45 6OU 620 A 1 HETATM 46 C C46 6OU . . . U 2 -41.81 73.94 -1.14 1 89.37 ? C46 6OU 620 A 1 HETATM 47 C C47 6OU . . . U 2 -41.305 72.552 -1.55 1 96.41 ? C47 6OU 620 A 1 HETATM 48 C C48 6OU . . . U 2 -39.769 72.511 -1.706 1 94.33 ? C48 6OU 620 A 1 HETATM 49 C C49 6OU . . . U 2 -39.285 71.212 -2.353 1 90.71 ? C49 6OU 620 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 227 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 49 #