data_8AQ4
#
_model_server_result.job_id            D4qM5qgPlwLGYfQYOrcetQ 
_model_server_result.datetime_utc      '2024-11-29 16:24:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8aq4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":601}' 
#
_entry.id    8AQ4 
#
_exptl.entry_id    8AQ4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              178.226 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8AQ4 
_cell.length_a            160.111 
_cell.length_b            160.111 
_cell.length_c            90.934 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8AQ4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 E N N 
? 2 K N N 
? 2 L N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             407 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              387 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            H 
_struct_conn.ptnr2_label_atom_id            C01 
_struct_conn.ptnr2_label_comp_id            QGT 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             QGT 
_struct_conn.ptnr2_auth_seq_id              607 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.806 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C8 H18 O4' 
_chem_comp.formula_weight    178.226 
_chem_comp.id                PG5 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PG5 sing 462 n n 
C1 H11 PG5 sing 463 n n 
C1 H12 PG5 sing 464 n n 
C1 H13 PG5 sing 465 n n 
O1 C2 PG5 sing 466 n n 
C2 C3 PG5 sing 467 n n 
C2 H21 PG5 sing 468 n n 
C2 H22 PG5 sing 469 n n 
C3 O2 PG5 sing 470 n n 
C3 H31 PG5 sing 471 n n 
C3 H32 PG5 sing 472 n n 
O2 C4 PG5 sing 473 n n 
C4 C5 PG5 sing 474 n n 
C4 H41 PG5 sing 475 n n 
C4 H42 PG5 sing 476 n n 
C5 O3 PG5 sing 477 n n 
C5 H51 PG5 sing 478 n n 
C5 H52 PG5 sing 479 n n 
O3 C6 PG5 sing 480 n n 
C6 C7 PG5 sing 481 n n 
C6 H61 PG5 sing 482 n n 
C6 H62 PG5 sing 483 n n 
C7 O4 PG5 sing 484 n n 
C7 H71 PG5 sing 485 n n 
C7 H72 PG5 sing 486 n n 
O4 C8 PG5 sing 487 n n 
C8 H81 PG5 sing 488 n n 
C8 H82 PG5 sing 489 n n 
C8 H83 PG5 sing 490 n n 
#
_atom_sites.entry_id                     8AQ4 
_atom_sites.fract_transf_matrix[1][1]    0.006246 
_atom_sites.fract_transf_matrix[1][2]    0.003606 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007212 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010997 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PG5 A 1 601 601 PG5 PG5 . 
C 3 GOL A 1 602 701 GOL GOL . 
D 3 GOL A 1 603 801 GOL GOL . 
E 2 PG5 A 1 604 901 PG5 PG5 . 
F 3 GOL A 1 605 1001 GOL GOL . 
G 4 6OU A 1 606 1101 6OU 6OU . 
H 5 QGT A 1 607 1 QGT QGT . 
I 4 6OU A 1 608 2 6OU 6OU . 
J 4 6OU A 1 609 3 6OU 6OU . 
K 2 PG5 A 1 610 5 PG5 PG5 . 
L 2 PG5 A 1 611 7 PG5 PG5 . 
M 6 PG6 A 1 612 8 PG6 PG6 . 
N 7 TRS A 1 613 9 TRS TRS . 
O 8 ACT A 1 614 10 ACT ACT . 
P 3 GOL A 1 615 11 GOL GOL . 
Q 3 GOL A 1 616 12 GOL GOL . 
R 3 GOL A 1 617 13 GOL GOL . 
S 9 LMT A 1 618 14 LMT LMT . 
T 9 LMT A 1 619 15 LMT LMT . 
U 9 LMT A 1 620 16 LMT LMT . 
V 10 CL A 1 621 17 CL CL . 
W 10 CL A 1 622 18 CL CL . 
X 11 HOH A 1 701 15 HOH HOH . 
X 11 HOH A 2 702 22 HOH HOH . 
X 11 HOH A 3 703 23 HOH HOH . 
X 11 HOH A 4 704 10 HOH HOH . 
X 11 HOH A 5 705 14 HOH HOH . 
X 11 HOH A 6 706 7 HOH HOH . 
X 11 HOH A 7 707 3 HOH HOH . 
X 11 HOH A 8 708 8 HOH HOH . 
X 11 HOH A 9 709 19 HOH HOH . 
X 11 HOH A 10 710 24 HOH HOH . 
X 11 HOH A 11 711 18 HOH HOH . 
X 11 HOH A 12 712 11 HOH HOH . 
X 11 HOH A 13 713 12 HOH HOH . 
X 11 HOH A 14 714 16 HOH HOH . 
X 11 HOH A 15 715 2 HOH HOH . 
X 11 HOH A 16 716 9 HOH HOH . 
X 11 HOH A 17 717 13 HOH HOH . 
X 11 HOH A 18 718 4 HOH HOH . 
X 11 HOH A 19 719 21 HOH HOH . 
X 11 HOH A 20 720 5 HOH HOH . 
X 11 HOH A 21 721 17 HOH HOH . 
X 11 HOH A 22 722 20 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 PG5 . . . B 2 62.294 -85.662 6.999 1 69.47 ? C2 PG5 601 A 1 
HETATM 2 C C3 PG5 . . . B 2 62.847 -87.063 7.23 1 79.27 ? C3 PG5 601 A 1 
HETATM 3 O O2 PG5 . . . B 2 63.915 -86.945 8.114 1 87.98 ? O2 PG5 601 A 1 
HETATM 4 C C4 PG5 . . . B 2 65.146 -86.846 7.469 1 92.84 ? C4 PG5 601 A 1 
HETATM 5 C C5 PG5 . . . B 2 66.178 -86.676 8.569 1 92.18 ? C5 PG5 601 A 1 
HETATM 6 O O3 PG5 . . . B 2 67.375 -86.224 8.027 1 89.6 ? O3 PG5 601 A 1 
HETATM 7 C C6 PG5 . . . B 2 68.306 -86.018 9.037 1 83.56 ? C6 PG5 601 A 1 
HETATM 8 C C7 PG5 . . . B 2 69.694 -85.945 8.429 1 78.27 ? C7 PG5 601 A 1 
HETATM 9 O O4 PG5 . . . B 2 70.557 -85.878 9.519 1 78 ? O4 PG5 601 A 1 
HETATM 10 C C8 PG5 . . . B 2 71.797 -85.308 9.234 1 66.24 ? C8 PG5 601 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           10 
#