data_8AQ4 # _model_server_result.job_id up-LvU1PTpj0biv-2iMwQw _model_server_result.datetime_utc '2024-11-29 16:09:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8aq4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":606}' # _entry.id 8AQ4 # _exptl.entry_id 8AQ4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 717.996 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8AQ4 _cell.length_a 160.111 _cell.length_b 160.111 _cell.length_c 90.934 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AQ4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 I N N ? 4 J N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 407 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 387 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id H _struct_conn.ptnr2_label_atom_id C01 _struct_conn.ptnr2_label_comp_id QGT _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id QGT _struct_conn.ptnr2_auth_seq_id 607 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.806 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C39 H76 N O8 P' _chem_comp.formula_weight 717.996 _chem_comp.id 6OU _chem_comp.mon_nstd_flag . _chem_comp.name '[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C48 C47 6OU sing 1 n n C48 C49 6OU sing 2 n n C47 C46 6OU sing 3 n n C41 C40 6OU doub 4 z n C41 C42 6OU sing 5 n n C40 C39 6OU sing 6 n n C27 C28 6OU sing 7 n n C27 O26 6OU sing 8 n n C28 N29 6OU sing 9 n n C01 C02 6OU sing 10 n n C42 C43 6OU sing 11 n n C02 C03 6OU sing 12 n n C45 C46 6OU sing 13 n n C45 C44 6OU sing 14 n n C39 C38 6OU sing 15 n n C33 C34 6OU sing 16 n n C33 C31 6OU sing 17 n n C44 C43 6OU sing 18 n n O26 P23 6OU sing 19 n n O24 P23 6OU doub 20 n n C35 C34 6OU sing 21 n n C35 C36 6OU sing 22 n n C38 C37 6OU sing 23 n n C36 C37 6OU sing 24 n n C31 O30 6OU sing 25 n n C31 O32 6OU doub 26 n n O22 P23 6OU sing 27 n n O22 C21 6OU sing 28 n n O30 C20 6OU sing 29 n n P23 O25 6OU sing 30 n n C03 C04 6OU sing 31 n n C04 C05 6OU sing 32 n n C19 C20 6OU sing 33 n n C19 O18 6OU sing 34 n n C21 C20 6OU sing 35 n n C15 C14 6OU sing 36 n n C15 C16 6OU sing 37 n n O18 C16 6OU sing 38 n n C14 C13 6OU sing 39 n n C05 C06 6OU sing 40 n n C16 O17 6OU doub 41 n n C06 C07 6OU sing 42 n n C11 C10 6OU sing 43 n n C11 C12 6OU sing 44 n n C13 C12 6OU sing 45 n n C10 C09 6OU sing 46 n n C07 C08 6OU sing 47 n n C09 C08 6OU sing 48 n n C01 H1 6OU sing 49 n n C01 H2 6OU sing 50 n n C01 H3 6OU sing 51 n n C02 H4 6OU sing 52 n n C02 H5 6OU sing 53 n n C03 H6 6OU sing 54 n n C03 H7 6OU sing 55 n n C04 H8 6OU sing 56 n n C04 H9 6OU sing 57 n n C05 H10 6OU sing 58 n n C05 H11 6OU sing 59 n n C06 H12 6OU sing 60 n n C06 H13 6OU sing 61 n n C07 H14 6OU sing 62 n n C07 H15 6OU sing 63 n n C08 H16 6OU sing 64 n n C08 H17 6OU sing 65 n n C09 H18 6OU sing 66 n n C09 H19 6OU sing 67 n n C10 H20 6OU sing 68 n n C10 H21 6OU sing 69 n n C11 H22 6OU sing 70 n n C11 H23 6OU sing 71 n n C12 H24 6OU sing 72 n n C12 H25 6OU sing 73 n n C13 H26 6OU sing 74 n n C13 H27 6OU sing 75 n n C14 H28 6OU sing 76 n n C14 H29 6OU sing 77 n n C15 H30 6OU sing 78 n n C15 H31 6OU sing 79 n n C19 H32 6OU sing 80 n n C19 H33 6OU sing 81 n n C20 H34 6OU sing 82 n n C21 H35 6OU sing 83 n n C21 H36 6OU sing 84 n n O25 H37 6OU sing 85 n n C27 H38 6OU sing 86 n n C27 H39 6OU sing 87 n n C28 H40 6OU sing 88 n n C28 H41 6OU sing 89 n n N29 H42 6OU sing 90 n n N29 H43 6OU sing 91 n n C33 H45 6OU sing 92 n n C33 H46 6OU sing 93 n n C34 H47 6OU sing 94 n n C34 H48 6OU sing 95 n n C35 H49 6OU sing 96 n n C35 H50 6OU sing 97 n n C36 H51 6OU sing 98 n n C36 H52 6OU sing 99 n n C37 H53 6OU sing 100 n n C37 H54 6OU sing 101 n n C38 H55 6OU sing 102 n n C38 H56 6OU sing 103 n n C39 H57 6OU sing 104 n n C39 H58 6OU sing 105 n n C40 H59 6OU sing 106 n n C41 H60 6OU sing 107 n n C42 H61 6OU sing 108 n n C42 H62 6OU sing 109 n n C43 H63 6OU sing 110 n n C43 H64 6OU sing 111 n n C44 H65 6OU sing 112 n n C44 H66 6OU sing 113 n n C45 H67 6OU sing 114 n n C45 H68 6OU sing 115 n n C46 H69 6OU sing 116 n n C46 H70 6OU sing 117 n n C47 H71 6OU sing 118 n n C47 H72 6OU sing 119 n n C48 H73 6OU sing 120 n n C48 H74 6OU sing 121 n n C49 H75 6OU sing 122 n n C49 H76 6OU sing 123 n n C49 H77 6OU sing 124 n n # _atom_sites.entry_id 8AQ4 _atom_sites.fract_transf_matrix[1][1] 0.006246 _atom_sites.fract_transf_matrix[1][2] 0.003606 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007212 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010997 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PG5 A 1 601 601 PG5 PG5 . C 3 GOL A 1 602 701 GOL GOL . D 3 GOL A 1 603 801 GOL GOL . E 2 PG5 A 1 604 901 PG5 PG5 . F 3 GOL A 1 605 1001 GOL GOL . G 4 6OU A 1 606 1101 6OU 6OU . H 5 QGT A 1 607 1 QGT QGT . I 4 6OU A 1 608 2 6OU 6OU . J 4 6OU A 1 609 3 6OU 6OU . K 2 PG5 A 1 610 5 PG5 PG5 . L 2 PG5 A 1 611 7 PG5 PG5 . M 6 PG6 A 1 612 8 PG6 PG6 . N 7 TRS A 1 613 9 TRS TRS . O 8 ACT A 1 614 10 ACT ACT . P 3 GOL A 1 615 11 GOL GOL . Q 3 GOL A 1 616 12 GOL GOL . R 3 GOL A 1 617 13 GOL GOL . S 9 LMT A 1 618 14 LMT LMT . T 9 LMT A 1 619 15 LMT LMT . U 9 LMT A 1 620 16 LMT LMT . V 10 CL A 1 621 17 CL CL . W 10 CL A 1 622 18 CL CL . X 11 HOH A 1 701 15 HOH HOH . X 11 HOH A 2 702 22 HOH HOH . X 11 HOH A 3 703 23 HOH HOH . X 11 HOH A 4 704 10 HOH HOH . X 11 HOH A 5 705 14 HOH HOH . X 11 HOH A 6 706 7 HOH HOH . X 11 HOH A 7 707 3 HOH HOH . X 11 HOH A 8 708 8 HOH HOH . X 11 HOH A 9 709 19 HOH HOH . X 11 HOH A 10 710 24 HOH HOH . X 11 HOH A 11 711 18 HOH HOH . X 11 HOH A 12 712 11 HOH HOH . X 11 HOH A 13 713 12 HOH HOH . X 11 HOH A 14 714 16 HOH HOH . X 11 HOH A 15 715 2 HOH HOH . X 11 HOH A 16 716 9 HOH HOH . X 11 HOH A 17 717 13 HOH HOH . X 11 HOH A 18 718 4 HOH HOH . X 11 HOH A 19 719 21 HOH HOH . X 11 HOH A 20 720 5 HOH HOH . X 11 HOH A 21 721 17 HOH HOH . X 11 HOH A 22 722 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 6OU . . . G 4 63.503 -63.825 20.097 1 80.83 ? C01 6OU 606 A 1 HETATM 2 C C02 6OU . . . G 4 63.08 -63.505 21.552 1 81.7 ? C02 6OU 606 A 1 HETATM 3 C C03 6OU . . . G 4 63.57 -64.636 22.493 1 80.58 ? C03 6OU 606 A 1 HETATM 4 C C04 6OU . . . G 4 64.018 -64.024 23.848 1 76.94 ? C04 6OU 606 A 1 HETATM 5 C C05 6OU . . . G 4 62.912 -64.257 24.911 1 76.64 ? C05 6OU 606 A 1 HETATM 6 C C06 6OU . . . G 4 62.103 -62.95 25.11 1 77.05 ? C06 6OU 606 A 1 HETATM 7 C C07 6OU . . . G 4 62.378 -62.382 26.532 1 77.03 ? C07 6OU 606 A 1 HETATM 8 C C08 6OU . . . G 4 61.274 -61.355 26.902 1 78.3 ? C08 6OU 606 A 1 HETATM 9 C C09 6OU . . . G 4 61.749 -60.494 28.107 1 74.33 ? C09 6OU 606 A 1 HETATM 10 C C10 6OU . . . G 4 60.522 -59.825 28.781 1 71.49 ? C10 6OU 606 A 1 HETATM 11 C C11 6OU . . . G 4 60.883 -58.37 29.19 1 75.72 ? C11 6OU 606 A 1 HETATM 12 C C12 6OU . . . G 4 59.767 -57.406 28.711 1 73.31 ? C12 6OU 606 A 1 HETATM 13 C C13 6OU . . . G 4 58.677 -57.287 29.809 1 79.2 ? C13 6OU 606 A 1 HETATM 14 C C14 6OU . . . G 4 57.276 -57.224 29.142 1 72.61 ? C14 6OU 606 A 1 HETATM 15 C C15 6OU . . . G 4 56.243 -56.658 30.156 1 73.25 ? C15 6OU 606 A 1 HETATM 16 C C16 6OU . . . G 4 54.863 -57.304 29.9 1 81.35 ? C16 6OU 606 A 1 HETATM 17 O O17 6OU . . . G 4 54.683 -58.445 30.171 1 83.07 ? O17 6OU 606 A 1 HETATM 18 O O18 6OU . . . G 4 53.814 -56.535 29.342 1 85.98 ? O18 6OU 606 A 1 HETATM 19 C C19 6OU . . . G 4 53.432 -55.429 30.129 1 75.87 ? C19 6OU 606 A 1 HETATM 20 C C20 6OU . . . G 4 52.817 -54.35 29.23 1 78.22 ? C20 6OU 606 A 1 HETATM 21 C C21 6OU . . . G 4 53.05 -52.967 29.857 1 74.15 ? C21 6OU 606 A 1 HETATM 22 O O22 6OU . . . G 4 54.073 -52.292 29.15 1 68.94 ? O22 6OU 606 A 1 HETATM 23 P P23 6OU . . . G 4 53.933 -50.648 28.926 1 79.08 ? P23 6OU 606 A 1 HETATM 24 O O24 6OU . . . G 4 54.279 -49.931 30.213 1 72.56 1 O24 6OU 606 A 1 HETATM 25 O O25 6OU . . . G 4 54.881 -50.206 27.833 1 70.03 ? O25 6OU 606 A 1 HETATM 26 O O26 6OU . . . G 4 52.37 -50.279 28.487 1 84.77 ? O26 6OU 606 A 1 HETATM 27 C C27 6OU . . . G 4 51.538 -51.322 28.016 1 79.98 ? C27 6OU 606 A 1 HETATM 28 C C28 6OU . . . G 4 50.196 -50.727 27.513 1 74.03 ? C28 6OU 606 A 1 HETATM 29 N N29 6OU . . . G 4 49.587 -51.646 26.543 1 77.98 1 N29 6OU 606 A 1 HETATM 30 O O30 6OU . . . G 4 51.443 -54.576 29.097 1 79.6 ? O30 6OU 606 A 1 HETATM 31 C C31 6OU . . . G 4 51.086 -55.936 29.032 1 81.07 ? C31 6OU 606 A 1 HETATM 32 O O32 6OU . . . G 4 50.483 -56.435 29.927 1 110.12 ? O32 6OU 606 A 1 HETATM 33 C C33 6OU . . . G 4 51.479 -56.783 27.796 1 80.53 ? C33 6OU 606 A 1 HETATM 34 C C34 6OU . . . G 4 50.246 -56.943 26.863 1 81.25 ? C34 6OU 606 A 1 HETATM 35 C C35 6OU . . . G 4 49.322 -58.067 27.41 1 80.78 ? C35 6OU 606 A 1 HETATM 36 C C36 6OU . . . G 4 50.056 -59.426 27.328 1 84.56 ? C36 6OU 606 A 1 HETATM 37 C C37 6OU . . . G 4 49.134 -60.472 26.652 1 82.28 ? C37 6OU 606 A 1 HETATM 38 C C38 6OU . . . G 4 49.645 -61.899 26.977 1 79.73 ? C38 6OU 606 A 1 HETATM 39 C C39 6OU . . . G 4 48.525 -62.924 26.688 1 84.09 ? C39 6OU 606 A 1 HETATM 40 C C40 6OU . . . G 4 47.242 -62.518 27.454 1 85.83 ? C40 6OU 606 A 1 HETATM 41 C C41 6OU . . . G 4 46.325 -63.438 27.758 1 88.19 ? C41 6OU 606 A 1 HETATM 42 C C42 6OU . . . G 4 46.541 -64.913 27.346 1 82.47 ? C42 6OU 606 A 1 HETATM 43 C C43 6OU . . . G 4 45.175 -65.648 27.321 1 87.22 ? C43 6OU 606 A 1 HETATM 44 C C44 6OU . . . G 4 45.22 -66.862 28.286 1 82.93 ? C44 6OU 606 A 1 HETATM 45 C C45 6OU . . . G 4 43.874 -67.636 28.208 1 87.59 ? C45 6OU 606 A 1 HETATM 46 C C46 6OU . . . G 4 43.397 -67.994 29.643 1 87.87 ? C46 6OU 606 A 1 HETATM 47 C C47 6OU . . . G 4 44.258 -69.159 30.198 1 91.64 ? C47 6OU 606 A 1 HETATM 48 C C48 6OU . . . G 4 43.383 -70.066 31.099 1 86.68 ? C48 6OU 606 A 1 HETATM 49 C C49 6OU . . . G 4 44.107 -71.411 31.334 1 89.61 ? C49 6OU 606 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 63 _model_server_stats.create_model_time_ms 45 _model_server_stats.query_time_ms 1310 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 49 #