data_8AQ4 # _model_server_result.job_id zpDhPKIIultikUOXXTo6Ig _model_server_result.datetime_utc '2024-11-26 04:15:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8aq4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":607}' # _entry.id 8AQ4 # _exptl.entry_id 8AQ4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 243.452 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-tridecylmethanethioamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8AQ4 _cell.length_a 160.111 _cell.length_b 160.111 _cell.length_c 90.934 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AQ4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 407 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 387 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id H _struct_conn.ptnr2_label_atom_id C01 _struct_conn.ptnr2_label_comp_id QGT _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id QGT _struct_conn.ptnr2_auth_seq_id 607 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.806 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C14 H29 N S' _chem_comp.formula_weight 243.452 _chem_comp.id QGT _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-tridecylmethanethioamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Tetradecyl-1-isothiocyanate (reacted form);TITC (reacted form)' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 S02 QGT doub 574 n n C01 N03 QGT sing 575 n n N03 C04 QGT sing 576 n n C04 C05 QGT sing 577 n n C05 C06 QGT sing 578 n n C06 C07 QGT sing 579 n n C07 C08 QGT sing 580 n n C08 C09 QGT sing 581 n n C09 C10 QGT sing 582 n n C10 C11 QGT sing 583 n n C11 C12 QGT sing 584 n n C12 C13 QGT sing 585 n n C13 C14 QGT sing 586 n n C14 C15 QGT sing 587 n n C15 C16 QGT sing 588 n n C10 H1 QGT sing 589 n n C10 H2 QGT sing 590 n n C12 H3 QGT sing 591 n n C12 H4 QGT sing 592 n n C11 H5 QGT sing 593 n n C11 H6 QGT sing 594 n n C01 H7 QGT sing 595 n n C04 H8 QGT sing 596 n n C04 H9 QGT sing 597 n n C05 H10 QGT sing 598 n n C05 H11 QGT sing 599 n n C06 H12 QGT sing 600 n n C06 H13 QGT sing 601 n n C07 H14 QGT sing 602 n n C07 H15 QGT sing 603 n n C08 H16 QGT sing 604 n n C08 H17 QGT sing 605 n n C09 H18 QGT sing 606 n n C09 H19 QGT sing 607 n n C13 H20 QGT sing 608 n n C13 H21 QGT sing 609 n n C14 H22 QGT sing 610 n n C14 H23 QGT sing 611 n n C15 H24 QGT sing 612 n n C15 H25 QGT sing 613 n n C16 H26 QGT sing 614 n n C16 H27 QGT sing 615 n n C16 H28 QGT sing 616 n n N03 H29 QGT sing 617 n n # _atom_sites.entry_id 8AQ4 _atom_sites.fract_transf_matrix[1][1] 0.006246 _atom_sites.fract_transf_matrix[1][2] 0.003606 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007212 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010997 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PG5 A 1 601 601 PG5 PG5 . C 3 GOL A 1 602 701 GOL GOL . D 3 GOL A 1 603 801 GOL GOL . E 2 PG5 A 1 604 901 PG5 PG5 . F 3 GOL A 1 605 1001 GOL GOL . G 4 6OU A 1 606 1101 6OU 6OU . H 5 QGT A 1 607 1 QGT QGT . I 4 6OU A 1 608 2 6OU 6OU . J 4 6OU A 1 609 3 6OU 6OU . K 2 PG5 A 1 610 5 PG5 PG5 . L 2 PG5 A 1 611 7 PG5 PG5 . M 6 PG6 A 1 612 8 PG6 PG6 . N 7 TRS A 1 613 9 TRS TRS . O 8 ACT A 1 614 10 ACT ACT . P 3 GOL A 1 615 11 GOL GOL . Q 3 GOL A 1 616 12 GOL GOL . R 3 GOL A 1 617 13 GOL GOL . S 9 LMT A 1 618 14 LMT LMT . T 9 LMT A 1 619 15 LMT LMT . U 9 LMT A 1 620 16 LMT LMT . V 10 CL A 1 621 17 CL CL . W 10 CL A 1 622 18 CL CL . X 11 HOH A 1 701 15 HOH HOH . X 11 HOH A 2 702 22 HOH HOH . X 11 HOH A 3 703 23 HOH HOH . X 11 HOH A 4 704 10 HOH HOH . X 11 HOH A 5 705 14 HOH HOH . X 11 HOH A 6 706 7 HOH HOH . X 11 HOH A 7 707 3 HOH HOH . X 11 HOH A 8 708 8 HOH HOH . X 11 HOH A 9 709 19 HOH HOH . X 11 HOH A 10 710 24 HOH HOH . X 11 HOH A 11 711 18 HOH HOH . X 11 HOH A 12 712 11 HOH HOH . X 11 HOH A 13 713 12 HOH HOH . X 11 HOH A 14 714 16 HOH HOH . X 11 HOH A 15 715 2 HOH HOH . X 11 HOH A 16 716 9 HOH HOH . X 11 HOH A 17 717 13 HOH HOH . X 11 HOH A 18 718 4 HOH HOH . X 11 HOH A 19 719 21 HOH HOH . X 11 HOH A 20 720 5 HOH HOH . X 11 HOH A 21 721 17 HOH HOH . X 11 HOH A 22 722 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 QGT . . . H 5 50.015 -50.838 11.391 1 60.54 ? C10 QGT 607 A 1 HETATM 2 C C12 QGT . . . H 5 48.603 -50.975 9.565 1 52.54 ? C12 QGT 607 A 1 HETATM 3 C C11 QGT . . . H 5 49.652 -51.759 10.282 1 52.31 ? C11 QGT 607 A 1 HETATM 4 C C01 QGT . . . H 5 59.454 -50.495 12.565 1 87.19 ? C01 QGT 607 A 1 HETATM 5 C C04 QGT . . . H 5 57.232 -51.501 12.633 1 51.54 ? C04 QGT 607 A 1 HETATM 6 C C05 QGT . . . H 5 55.868 -51.826 13.372 1 44.81 ? C05 QGT 607 A 1 HETATM 7 C C06 QGT . . . H 5 54.548 -50.96 13.428 1 51.19 ? C06 QGT 607 A 1 HETATM 8 C C07 QGT . . . H 5 53.347 -51.564 12.672 1 46.28 ? C07 QGT 607 A 1 HETATM 9 C C08 QGT . . . H 5 51.94 -51.026 12.892 1 50.2 ? C08 QGT 607 A 1 HETATM 10 C C09 QGT . . . H 5 51.504 -50.886 11.457 1 56.14 ? C09 QGT 607 A 1 HETATM 11 C C13 QGT . . . H 5 48.455 -51.754 8.311 1 44.42 ? C13 QGT 607 A 1 HETATM 12 C C14 QGT . . . H 5 47.129 -52.446 8.435 1 47.79 ? C14 QGT 607 A 1 HETATM 13 C C15 QGT . . . H 5 47.243 -53.402 7.285 1 55.04 ? C15 QGT 607 A 1 HETATM 14 C C16 QGT . . . H 5 46.945 -52.551 6.067 1 50.6 ? C16 QGT 607 A 1 HETATM 15 N N03 QGT . . . H 5 58.655 -51.578 13.132 1 57.94 ? N03 QGT 607 A 1 HETATM 16 S S02 QGT . . . H 5 58.808 -49.121 12.301 1 110.01 ? S02 QGT 607 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #