data_8AQ4
#
_model_server_result.job_id            -ioxpXkIU2gCJsy6fL3vKA 
_model_server_result.datetime_utc      '2024-11-08 13:53:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8aq4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":607}' 
#
_entry.id    8AQ4 
#
_exptl.entry_id    8AQ4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              243.452 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ~{N}-tridecylmethanethioamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8AQ4 
_cell.length_a            160.111 
_cell.length_b            160.111 
_cell.length_c            90.934 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8AQ4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             H 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             407 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              387 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            H 
_struct_conn.ptnr2_label_atom_id            C01 
_struct_conn.ptnr2_label_comp_id            QGT 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             QGT 
_struct_conn.ptnr2_auth_seq_id              607 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.806 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C14 H29 N S' 
_chem_comp.formula_weight    243.452 
_chem_comp.id                QGT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ~{N}-tridecylmethanethioamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'Tetradecyl-1-isothiocyanate (reacted form);TITC (reacted form)' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C01 S02 QGT doub 574 n n 
C01 N03 QGT sing 575 n n 
N03 C04 QGT sing 576 n n 
C04 C05 QGT sing 577 n n 
C05 C06 QGT sing 578 n n 
C06 C07 QGT sing 579 n n 
C07 C08 QGT sing 580 n n 
C08 C09 QGT sing 581 n n 
C09 C10 QGT sing 582 n n 
C10 C11 QGT sing 583 n n 
C11 C12 QGT sing 584 n n 
C12 C13 QGT sing 585 n n 
C13 C14 QGT sing 586 n n 
C14 C15 QGT sing 587 n n 
C15 C16 QGT sing 588 n n 
C10 H1 QGT sing 589 n n 
C10 H2 QGT sing 590 n n 
C12 H3 QGT sing 591 n n 
C12 H4 QGT sing 592 n n 
C11 H5 QGT sing 593 n n 
C11 H6 QGT sing 594 n n 
C01 H7 QGT sing 595 n n 
C04 H8 QGT sing 596 n n 
C04 H9 QGT sing 597 n n 
C05 H10 QGT sing 598 n n 
C05 H11 QGT sing 599 n n 
C06 H12 QGT sing 600 n n 
C06 H13 QGT sing 601 n n 
C07 H14 QGT sing 602 n n 
C07 H15 QGT sing 603 n n 
C08 H16 QGT sing 604 n n 
C08 H17 QGT sing 605 n n 
C09 H18 QGT sing 606 n n 
C09 H19 QGT sing 607 n n 
C13 H20 QGT sing 608 n n 
C13 H21 QGT sing 609 n n 
C14 H22 QGT sing 610 n n 
C14 H23 QGT sing 611 n n 
C15 H24 QGT sing 612 n n 
C15 H25 QGT sing 613 n n 
C16 H26 QGT sing 614 n n 
C16 H27 QGT sing 615 n n 
C16 H28 QGT sing 616 n n 
N03 H29 QGT sing 617 n n 
#
_atom_sites.entry_id                     8AQ4 
_atom_sites.fract_transf_matrix[1][1]    0.006246 
_atom_sites.fract_transf_matrix[1][2]    0.003606 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007212 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010997 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PG5 A 1 601 601 PG5 PG5 . 
C 3 GOL A 1 602 701 GOL GOL . 
D 3 GOL A 1 603 801 GOL GOL . 
E 2 PG5 A 1 604 901 PG5 PG5 . 
F 3 GOL A 1 605 1001 GOL GOL . 
G 4 6OU A 1 606 1101 6OU 6OU . 
H 5 QGT A 1 607 1 QGT QGT . 
I 4 6OU A 1 608 2 6OU 6OU . 
J 4 6OU A 1 609 3 6OU 6OU . 
K 2 PG5 A 1 610 5 PG5 PG5 . 
L 2 PG5 A 1 611 7 PG5 PG5 . 
M 6 PG6 A 1 612 8 PG6 PG6 . 
N 7 TRS A 1 613 9 TRS TRS . 
O 8 ACT A 1 614 10 ACT ACT . 
P 3 GOL A 1 615 11 GOL GOL . 
Q 3 GOL A 1 616 12 GOL GOL . 
R 3 GOL A 1 617 13 GOL GOL . 
S 9 LMT A 1 618 14 LMT LMT . 
T 9 LMT A 1 619 15 LMT LMT . 
U 9 LMT A 1 620 16 LMT LMT . 
V 10 CL A 1 621 17 CL CL . 
W 10 CL A 1 622 18 CL CL . 
X 11 HOH A 1 701 15 HOH HOH . 
X 11 HOH A 2 702 22 HOH HOH . 
X 11 HOH A 3 703 23 HOH HOH . 
X 11 HOH A 4 704 10 HOH HOH . 
X 11 HOH A 5 705 14 HOH HOH . 
X 11 HOH A 6 706 7 HOH HOH . 
X 11 HOH A 7 707 3 HOH HOH . 
X 11 HOH A 8 708 8 HOH HOH . 
X 11 HOH A 9 709 19 HOH HOH . 
X 11 HOH A 10 710 24 HOH HOH . 
X 11 HOH A 11 711 18 HOH HOH . 
X 11 HOH A 12 712 11 HOH HOH . 
X 11 HOH A 13 713 12 HOH HOH . 
X 11 HOH A 14 714 16 HOH HOH . 
X 11 HOH A 15 715 2 HOH HOH . 
X 11 HOH A 16 716 9 HOH HOH . 
X 11 HOH A 17 717 13 HOH HOH . 
X 11 HOH A 18 718 4 HOH HOH . 
X 11 HOH A 19 719 21 HOH HOH . 
X 11 HOH A 20 720 5 HOH HOH . 
X 11 HOH A 21 721 17 HOH HOH . 
X 11 HOH A 22 722 20 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 QGT . . . H 5 50.015 -50.838 11.391 1 60.54 ? C10 QGT 607 A 1 
HETATM 2 C C12 QGT . . . H 5 48.603 -50.975 9.565 1 52.54 ? C12 QGT 607 A 1 
HETATM 3 C C11 QGT . . . H 5 49.652 -51.759 10.282 1 52.31 ? C11 QGT 607 A 1 
HETATM 4 C C01 QGT . . . H 5 59.454 -50.495 12.565 1 87.19 ? C01 QGT 607 A 1 
HETATM 5 C C04 QGT . . . H 5 57.232 -51.501 12.633 1 51.54 ? C04 QGT 607 A 1 
HETATM 6 C C05 QGT . . . H 5 55.868 -51.826 13.372 1 44.81 ? C05 QGT 607 A 1 
HETATM 7 C C06 QGT . . . H 5 54.548 -50.96 13.428 1 51.19 ? C06 QGT 607 A 1 
HETATM 8 C C07 QGT . . . H 5 53.347 -51.564 12.672 1 46.28 ? C07 QGT 607 A 1 
HETATM 9 C C08 QGT . . . H 5 51.94 -51.026 12.892 1 50.2 ? C08 QGT 607 A 1 
HETATM 10 C C09 QGT . . . H 5 51.504 -50.886 11.457 1 56.14 ? C09 QGT 607 A 1 
HETATM 11 C C13 QGT . . . H 5 48.455 -51.754 8.311 1 44.42 ? C13 QGT 607 A 1 
HETATM 12 C C14 QGT . . . H 5 47.129 -52.446 8.435 1 47.79 ? C14 QGT 607 A 1 
HETATM 13 C C15 QGT . . . H 5 47.243 -53.402 7.285 1 55.04 ? C15 QGT 607 A 1 
HETATM 14 C C16 QGT . . . H 5 46.945 -52.551 6.067 1 50.6 ? C16 QGT 607 A 1 
HETATM 15 N N03 QGT . . . H 5 58.655 -51.578 13.132 1 57.94 ? N03 QGT 607 A 1 
HETATM 16 S S02 QGT . . . H 5 58.808 -49.121 12.301 1 110.01 ? S02 QGT 607 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           246 
_model_server_stats.encode_time_ms          19 
_model_server_stats.element_count           16 
#