data_8AQ4 # _model_server_result.job_id jkfT8_orEMoGbbacoUid1g _model_server_result.datetime_utc '2024-11-08 13:42:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8aq4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":620}' # _entry.id 8AQ4 # _exptl.entry_id 8AQ4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 510.615 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8AQ4 _cell.length_a 160.111 _cell.length_b 160.111 _cell.length_c 90.934 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AQ4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 S N N ? 9 T N N ? 9 U N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 407 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 387 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id H _struct_conn.ptnr2_label_atom_id C01 _struct_conn.ptnr2_label_comp_id QGT _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id QGT _struct_conn.ptnr2_auth_seq_id 607 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.806 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 337 n n C1B O1B LMT sing 338 n n C1B O5B LMT sing 339 n n C1B H1B LMT sing 340 n n C2B C3B LMT sing 341 n n C2B O2B LMT sing 342 n n C2B H2B LMT sing 343 n n C3B C4B LMT sing 344 n n C3B O3B LMT sing 345 n n C3B H3B LMT sing 346 n n C4B C5B LMT sing 347 n n C4B O4' LMT sing 348 n n C4B H4B LMT sing 349 n n C5B C6B LMT sing 350 n n C5B O5B LMT sing 351 n n C5B H5B LMT sing 352 n n C6B O6B LMT sing 353 n n C6B "H6'2" LMT sing 354 n n C6B "H6'1" LMT sing 355 n n O1B C4' LMT sing 356 n n O2B H2O1 LMT sing 357 n n O3B H3O1 LMT sing 358 n n O4' H4O1 LMT sing 359 n n O6B H6B LMT sing 360 n n C1' C2' LMT sing 361 n n C1' O1' LMT sing 362 n n C1' O5' LMT sing 363 n n C1' H1' LMT sing 364 n n C2' C3' LMT sing 365 n n C2' O2' LMT sing 366 n n C2' H2' LMT sing 367 n n C3' C4' LMT sing 368 n n C3' O3' LMT sing 369 n n C3' H3' LMT sing 370 n n C4' C5' LMT sing 371 n n C4' H4' LMT sing 372 n n C5' C6' LMT sing 373 n n C5' O5' LMT sing 374 n n C5' H5' LMT sing 375 n n C6' O6' LMT sing 376 n n C6' H6D LMT sing 377 n n C6' H6E LMT sing 378 n n O1' C1 LMT sing 379 n n O2' H2O2 LMT sing 380 n n O3' H3O2 LMT sing 381 n n O6' H6' LMT sing 382 n n C1 C2 LMT sing 383 n n C1 H12 LMT sing 384 n n C1 H11 LMT sing 385 n n C2 C3 LMT sing 386 n n C2 H22 LMT sing 387 n n C2 H21 LMT sing 388 n n C3 C4 LMT sing 389 n n C3 H32 LMT sing 390 n n C3 H31 LMT sing 391 n n C4 C5 LMT sing 392 n n C4 H42 LMT sing 393 n n C4 H41 LMT sing 394 n n C5 C6 LMT sing 395 n n C5 H52 LMT sing 396 n n C5 H51 LMT sing 397 n n C6 C7 LMT sing 398 n n C6 H62 LMT sing 399 n n C6 H61 LMT sing 400 n n C7 C8 LMT sing 401 n n C7 H72 LMT sing 402 n n C7 H71 LMT sing 403 n n C8 C9 LMT sing 404 n n C8 H82 LMT sing 405 n n C8 H81 LMT sing 406 n n C9 C10 LMT sing 407 n n C9 H92 LMT sing 408 n n C9 H91 LMT sing 409 n n C10 C11 LMT sing 410 n n C10 H102 LMT sing 411 n n C10 H101 LMT sing 412 n n C11 C12 LMT sing 413 n n C11 H112 LMT sing 414 n n C11 H111 LMT sing 415 n n C12 H123 LMT sing 416 n n C12 H122 LMT sing 417 n n C12 H121 LMT sing 418 n n # _atom_sites.entry_id 8AQ4 _atom_sites.fract_transf_matrix[1][1] 0.006246 _atom_sites.fract_transf_matrix[1][2] 0.003606 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007212 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010997 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PG5 A 1 601 601 PG5 PG5 . C 3 GOL A 1 602 701 GOL GOL . D 3 GOL A 1 603 801 GOL GOL . E 2 PG5 A 1 604 901 PG5 PG5 . F 3 GOL A 1 605 1001 GOL GOL . G 4 6OU A 1 606 1101 6OU 6OU . H 5 QGT A 1 607 1 QGT QGT . I 4 6OU A 1 608 2 6OU 6OU . J 4 6OU A 1 609 3 6OU 6OU . K 2 PG5 A 1 610 5 PG5 PG5 . L 2 PG5 A 1 611 7 PG5 PG5 . M 6 PG6 A 1 612 8 PG6 PG6 . N 7 TRS A 1 613 9 TRS TRS . O 8 ACT A 1 614 10 ACT ACT . P 3 GOL A 1 615 11 GOL GOL . Q 3 GOL A 1 616 12 GOL GOL . R 3 GOL A 1 617 13 GOL GOL . S 9 LMT A 1 618 14 LMT LMT . T 9 LMT A 1 619 15 LMT LMT . U 9 LMT A 1 620 16 LMT LMT . V 10 CL A 1 621 17 CL CL . W 10 CL A 1 622 18 CL CL . X 11 HOH A 1 701 15 HOH HOH . X 11 HOH A 2 702 22 HOH HOH . X 11 HOH A 3 703 23 HOH HOH . X 11 HOH A 4 704 10 HOH HOH . X 11 HOH A 5 705 14 HOH HOH . X 11 HOH A 6 706 7 HOH HOH . X 11 HOH A 7 707 3 HOH HOH . X 11 HOH A 8 708 8 HOH HOH . X 11 HOH A 9 709 19 HOH HOH . X 11 HOH A 10 710 24 HOH HOH . X 11 HOH A 11 711 18 HOH HOH . X 11 HOH A 12 712 11 HOH HOH . X 11 HOH A 13 713 12 HOH HOH . X 11 HOH A 14 714 16 HOH HOH . X 11 HOH A 15 715 2 HOH HOH . X 11 HOH A 16 716 9 HOH HOH . X 11 HOH A 17 717 13 HOH HOH . X 11 HOH A 18 718 4 HOH HOH . X 11 HOH A 19 719 21 HOH HOH . X 11 HOH A 20 720 5 HOH HOH . X 11 HOH A 21 721 17 HOH HOH . X 11 HOH A 22 722 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B LMT . . . U 9 50.05 -53.415 -3.597 1 136.95 ? C1B LMT 620 A 1 HETATM 2 C C2B LMT . . . U 9 50.735 -53.939 -4.894 1 141.76 ? C2B LMT 620 A 1 HETATM 3 C C3B LMT . . . U 9 51.401 -55.272 -4.596 1 140.77 ? C3B LMT 620 A 1 HETATM 4 C C4B LMT . . . U 9 52.464 -54.885 -3.561 1 132.63 ? C4B LMT 620 A 1 HETATM 5 C C5B LMT . . . U 9 51.618 -54.481 -2.356 1 126.63 ? C5B LMT 620 A 1 HETATM 6 C C6B LMT . . . U 9 52.463 -54.521 -1.115 1 116.07 ? C6B LMT 620 A 1 HETATM 7 O O1B LMT . . . U 9 49.057 -54.253 -3.061 1 132.07 ? O1B LMT 620 A 1 HETATM 8 O O2B LMT . . . U 9 49.885 -53.994 -5.974 1 143.19 ? O2B LMT 620 A 1 HETATM 9 O O3B LMT . . . U 9 51.887 -55.861 -5.719 1 138.59 ? O3B LMT 620 A 1 HETATM 10 O O4' LMT . . . U 9 53.303 -55.911 -3.235 1 126.94 ? O4' LMT 620 A 1 HETATM 11 O O5B LMT . . . U 9 51.001 -53.254 -2.601 1 133.62 ? O5B LMT 620 A 1 HETATM 12 O O6B LMT . . . U 9 53.125 -55.717 -1.119 1 114.96 ? O6B LMT 620 A 1 HETATM 13 C C1' LMT . . . U 9 44.952 -53.734 -2.408 1 122.02 ? C1' LMT 620 A 1 HETATM 14 C C2' LMT . . . U 9 45.463 -54.647 -3.526 1 125.7 ? C2' LMT 620 A 1 HETATM 15 C C3' LMT . . . U 9 46.801 -55.109 -2.981 1 133.61 ? C3' LMT 620 A 1 HETATM 16 C C4' LMT . . . U 9 47.7 -53.925 -3.315 1 131.38 ? C4' LMT 620 A 1 HETATM 17 C C5' LMT . . . U 9 47.171 -52.722 -2.448 1 127.39 ? C5' LMT 620 A 1 HETATM 18 C C6' LMT . . . U 9 47.791 -51.409 -2.874 1 126.34 ? C6' LMT 620 A 1 HETATM 19 O O1' LMT . . . U 9 43.62 -53.401 -2.564 1 119.12 ? O1' LMT 620 A 1 HETATM 20 O O2' LMT . . . U 9 44.675 -55.732 -3.782 1 119.17 ? O2' LMT 620 A 1 HETATM 21 O O3' LMT . . . U 9 47.201 -56.266 -3.566 1 137.38 ? O3' LMT 620 A 1 HETATM 22 O O5' LMT . . . U 9 45.748 -52.54 -2.477 1 123.4 ? O5' LMT 620 A 1 HETATM 23 O O6' LMT . . . U 9 47.077 -50.399 -2.395 1 121.67 ? O6' LMT 620 A 1 HETATM 24 C C1 LMT . . . U 9 42.697 -54.46 -2.287 1 107.49 ? C1 LMT 620 A 1 HETATM 25 C C2 LMT . . . U 9 41.423 -53.903 -1.726 1 94.65 ? C2 LMT 620 A 1 HETATM 26 C C3 LMT . . . U 9 40.659 -54.845 -0.837 1 92.63 ? C3 LMT 620 A 1 HETATM 27 C C4 LMT . . . U 9 40.19 -54.106 0.402 1 94.74 ? C4 LMT 620 A 1 HETATM 28 C C5 LMT . . . U 9 39.117 -54.885 1.115 1 89.17 ? C5 LMT 620 A 1 HETATM 29 C C6 LMT . . . U 9 39.484 -55.408 2.482 1 79.63 ? C6 LMT 620 A 1 HETATM 30 C C7 LMT . . . U 9 38.396 -56.381 2.901 1 86.54 ? C7 LMT 620 A 1 HETATM 31 C C8 LMT . . . U 9 38.91 -57.477 3.795 1 82.56 ? C8 LMT 620 A 1 HETATM 32 C C9 LMT . . . U 9 38.564 -58.893 3.372 1 70.19 ? C9 LMT 620 A 1 HETATM 33 C C10 LMT . . . U 9 37.111 -59.185 3.699 1 80.87 ? C10 LMT 620 A 1 HETATM 34 C C11 LMT . . . U 9 36.87 -60.613 4.119 1 77.11 ? C11 LMT 620 A 1 HETATM 35 C C12 LMT . . . U 9 35.435 -60.867 4.484 1 55.29 ? C12 LMT 620 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 35 #