data_8AQ7 # _model_server_result.job_id C9m-eJG3H5PfL8AqhJQ_XA _model_server_result.datetime_utc '2025-09-03 21:55:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8aq7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1004}' # _entry.id 8AQ7 # _exptl.entry_id 8AQ7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.201 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8AQ7 _cell.length_a 43.408 _cell.length_b 64.791 _cell.length_c 132.621 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AQ7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,J 1 1 B,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 13 A CYS 12 1_555 E C28 NZX . A NZX 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.785 ? covale ? covale2 B SG CYS 13 B CYS 12 1_555 H C28 NZX . B NZX 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.785 ? metalc ? metalc1 A OG SER 18 A SER 17 1_555 C MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc2 C MG MG . A MG 1001 1_555 F O2B GDP . A GDP 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? metalc ? metalc3 C MG MG . A MG 1001 1_555 J O HOH . A HOH 1128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc4 C MG MG . A MG 1001 1_555 J O HOH . A HOH 1144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc5 C MG MG . A MG 1001 1_555 J O HOH . A HOH 1155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc6 C MG MG . A MG 1001 1_555 J O HOH . A HOH 1160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc7 D MG MG . A MG 1002 1_555 J O HOH . A HOH 1110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc8 D MG MG . A MG 1002 1_555 J O HOH . A HOH 1117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc9 D MG MG . A MG 1002 1_555 J O HOH . A HOH 1129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc10 D MG MG . A MG 1002 1_555 J O HOH . A HOH 1147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc11 D MG MG . A MG 1002 1_555 J O HOH . A HOH 1264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc12 D MG MG . A MG 1002 1_555 J O HOH . A HOH 1267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc13 B OG SER 18 B SER 17 1_555 G MG MG . B MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc14 G MG MG . B MG 1001 1_555 I O1B GDP . B GDP 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc15 G MG MG . B MG 1001 1_555 K O HOH . B HOH 1112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc16 G MG MG . B MG 1001 1_555 K O HOH . B HOH 1117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc17 G MG MG . B MG 1001 1_555 K O HOH . B HOH 1133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc18 G MG MG . B MG 1001 1_555 K O HOH . B HOH 1173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? # _chem_comp.formula 'C10 H15 N5 O11 P2' _chem_comp.formula_weight 443.201 _chem_comp.id GDP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-DIPHOSPHATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B GDP doub 83 n n PB O2B GDP sing 84 n n PB O3B GDP sing 85 n n PB O3A GDP sing 86 n n O2B HOB2 GDP sing 87 n n O3B HOB3 GDP sing 88 n n O3A PA GDP sing 89 n n PA O1A GDP doub 90 n n PA O2A GDP sing 91 n n PA O5' GDP sing 92 n n O2A HOA2 GDP sing 93 n n O5' C5' GDP sing 94 n n C5' C4' GDP sing 95 n n C5' H5' GDP sing 96 n n C5' "H5''" GDP sing 97 n n C4' O4' GDP sing 98 n n C4' C3' GDP sing 99 n n C4' H4' GDP sing 100 n n O4' C1' GDP sing 101 n n C3' O3' GDP sing 102 n n C3' C2' GDP sing 103 n n C3' H3' GDP sing 104 n n O3' HO3' GDP sing 105 n n C2' O2' GDP sing 106 n n C2' C1' GDP sing 107 n n C2' H2' GDP sing 108 n n O2' HO2' GDP sing 109 n n C1' N9 GDP sing 110 n n C1' H1' GDP sing 111 n n N9 C8 GDP sing 112 n y N9 C4 GDP sing 113 n y C8 N7 GDP doub 114 n y C8 H8 GDP sing 115 n n N7 C5 GDP sing 116 n y C5 C6 GDP sing 117 n n C5 C4 GDP doub 118 n y C6 O6 GDP doub 119 n n C6 N1 GDP sing 120 n n N1 C2 GDP sing 121 n n N1 HN1 GDP sing 122 n n C2 N2 GDP sing 123 n n C2 N3 GDP doub 124 n n N2 HN21 GDP sing 125 n n N2 HN22 GDP sing 126 n n N3 C4 GDP sing 127 n n # _atom_sites.entry_id 8AQ7 _atom_sites.fract_transf_matrix[1][1] 0.023037 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015434 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00754 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 1001 1001 MG MG . D 2 MG A 1 1002 1 MG MG . E 3 NZX A 1 1003 1 NZX LI1 . F 4 GDP A 1 1004 2 GDP GDP . G 2 MG B 1 1001 1001 MG MG . H 3 NZX B 1 1002 3 NZX LI1 . I 4 GDP B 1 1003 4 GDP GDP . J 5 HOH A 1 1101 293 HOH HOH . J 5 HOH A 2 1102 291 HOH HOH . J 5 HOH A 3 1103 286 HOH HOH . J 5 HOH A 4 1104 297 HOH HOH . J 5 HOH A 5 1105 306 HOH HOH . J 5 HOH A 6 1106 284 HOH HOH . J 5 HOH A 7 1107 146 HOH HOH . J 5 HOH A 8 1108 253 HOH HOH . J 5 HOH A 9 1109 244 HOH HOH . J 5 HOH A 10 1110 11 HOH HOH . J 5 HOH A 11 1111 298 HOH HOH . J 5 HOH A 12 1112 64 HOH HOH . J 5 HOH A 13 1113 184 HOH HOH . J 5 HOH A 14 1114 34 HOH HOH . J 5 HOH A 15 1115 270 HOH HOH . J 5 HOH A 16 1116 178 HOH HOH . J 5 HOH A 17 1117 10 HOH HOH . J 5 HOH A 18 1118 21 HOH HOH . J 5 HOH A 19 1119 174 HOH HOH . J 5 HOH A 20 1120 139 HOH HOH . J 5 HOH A 21 1121 278 HOH HOH . J 5 HOH A 22 1122 69 HOH HOH . J 5 HOH A 23 1123 220 HOH HOH . J 5 HOH A 24 1124 109 HOH HOH . J 5 HOH A 25 1125 23 HOH HOH . J 5 HOH A 26 1126 258 HOH HOH . J 5 HOH A 27 1127 221 HOH HOH . J 5 HOH A 28 1128 2 HOH HOH . J 5 HOH A 29 1129 13 HOH HOH . J 5 HOH A 30 1130 194 HOH HOH . J 5 HOH A 31 1131 75 HOH HOH . J 5 HOH A 32 1132 157 HOH HOH . J 5 HOH A 33 1133 42 HOH HOH . J 5 HOH A 34 1134 282 HOH HOH . J 5 HOH A 35 1135 176 HOH HOH . J 5 HOH A 36 1136 61 HOH HOH . J 5 HOH A 37 1137 112 HOH HOH . J 5 HOH A 38 1138 169 HOH HOH . J 5 HOH A 39 1139 269 HOH HOH . J 5 HOH A 40 1140 53 HOH HOH . J 5 HOH A 41 1141 177 HOH HOH . J 5 HOH A 42 1142 81 HOH HOH . J 5 HOH A 43 1143 223 HOH HOH . J 5 HOH A 44 1144 4 HOH HOH . J 5 HOH A 45 1145 60 HOH HOH . J 5 HOH A 46 1146 41 HOH HOH . J 5 HOH A 47 1147 14 HOH HOH . J 5 HOH A 48 1148 308 HOH HOH . J 5 HOH A 49 1149 44 HOH HOH . J 5 HOH A 50 1150 18 HOH HOH . J 5 HOH A 51 1151 247 HOH HOH . J 5 HOH A 52 1152 22 HOH HOH . J 5 HOH A 53 1153 58 HOH HOH . J 5 HOH A 54 1154 309 HOH HOH . J 5 HOH A 55 1155 1 HOH HOH . J 5 HOH A 56 1156 103 HOH HOH . J 5 HOH A 57 1157 96 HOH HOH . J 5 HOH A 58 1158 155 HOH HOH . J 5 HOH A 59 1159 28 HOH HOH . J 5 HOH A 60 1160 3 HOH HOH . J 5 HOH A 61 1161 170 HOH HOH . J 5 HOH A 62 1162 33 HOH HOH . J 5 HOH A 63 1163 32 HOH HOH . J 5 HOH A 64 1164 310 HOH HOH . J 5 HOH A 65 1165 59 HOH HOH . J 5 HOH A 66 1166 99 HOH HOH . J 5 HOH A 67 1167 19 HOH HOH . J 5 HOH A 68 1168 307 HOH HOH . J 5 HOH A 69 1169 129 HOH HOH . J 5 HOH A 70 1170 179 HOH HOH . J 5 HOH A 71 1171 167 HOH HOH . J 5 HOH A 72 1172 30 HOH HOH . J 5 HOH A 73 1173 26 HOH HOH . J 5 HOH A 74 1174 52 HOH HOH . J 5 HOH A 75 1175 90 HOH HOH . J 5 HOH A 76 1176 65 HOH HOH . J 5 HOH A 77 1177 137 HOH HOH . J 5 HOH A 78 1178 49 HOH HOH . J 5 HOH A 79 1179 72 HOH HOH . J 5 HOH A 80 1180 213 HOH HOH . J 5 HOH A 81 1181 138 HOH HOH . J 5 HOH A 82 1182 290 HOH HOH . J 5 HOH A 83 1183 281 HOH HOH . J 5 HOH A 84 1184 188 HOH HOH . J 5 HOH A 85 1185 145 HOH HOH . J 5 HOH A 86 1186 172 HOH HOH . J 5 HOH A 87 1187 71 HOH HOH . J 5 HOH A 88 1188 235 HOH HOH . J 5 HOH A 89 1189 83 HOH HOH . J 5 HOH A 90 1190 117 HOH HOH . J 5 HOH A 91 1191 15 HOH HOH . J 5 HOH A 92 1192 131 HOH HOH . J 5 HOH A 93 1193 175 HOH HOH . J 5 HOH A 94 1194 299 HOH HOH . J 5 HOH A 95 1195 108 HOH HOH . J 5 HOH A 96 1196 88 HOH HOH . J 5 HOH A 97 1197 56 HOH HOH . J 5 HOH A 98 1198 68 HOH HOH . J 5 HOH A 99 1199 132 HOH HOH . J 5 HOH A 100 1200 29 HOH HOH . J 5 HOH A 101 1201 127 HOH HOH . J 5 HOH A 102 1202 227 HOH HOH . J 5 HOH A 103 1203 50 HOH HOH . J 5 HOH A 104 1204 118 HOH HOH . J 5 HOH A 105 1205 48 HOH HOH . J 5 HOH A 106 1206 199 HOH HOH . J 5 HOH A 107 1207 128 HOH HOH . J 5 HOH A 108 1208 195 HOH HOH . J 5 HOH A 109 1209 38 HOH HOH . J 5 HOH A 110 1210 225 HOH HOH . J 5 HOH A 111 1211 276 HOH HOH . J 5 HOH A 112 1212 140 HOH HOH . J 5 HOH A 113 1213 76 HOH HOH . J 5 HOH A 114 1214 70 HOH HOH . J 5 HOH A 115 1215 208 HOH HOH . J 5 HOH A 116 1216 200 HOH HOH . J 5 HOH A 117 1217 211 HOH HOH . J 5 HOH A 118 1218 152 HOH HOH . J 5 HOH A 119 1219 283 HOH HOH . J 5 HOH A 120 1220 130 HOH HOH . J 5 HOH A 121 1221 192 HOH HOH . J 5 HOH A 122 1222 162 HOH HOH . J 5 HOH A 123 1223 242 HOH HOH . J 5 HOH A 124 1224 153 HOH HOH . J 5 HOH A 125 1225 180 HOH HOH . J 5 HOH A 126 1226 249 HOH HOH . J 5 HOH A 127 1227 17 HOH HOH . J 5 HOH A 128 1228 189 HOH HOH . J 5 HOH A 129 1229 183 HOH HOH . J 5 HOH A 130 1230 202 HOH HOH . J 5 HOH A 131 1231 216 HOH HOH . J 5 HOH A 132 1232 190 HOH HOH . J 5 HOH A 133 1233 84 HOH HOH . J 5 HOH A 134 1234 193 HOH HOH . J 5 HOH A 135 1235 273 HOH HOH . J 5 HOH A 136 1236 226 HOH HOH . J 5 HOH A 137 1237 191 HOH HOH . J 5 HOH A 138 1238 252 HOH HOH . J 5 HOH A 139 1239 142 HOH HOH . J 5 HOH A 140 1240 113 HOH HOH . J 5 HOH A 141 1241 294 HOH HOH . J 5 HOH A 142 1242 311 HOH HOH . J 5 HOH A 143 1243 95 HOH HOH . J 5 HOH A 144 1244 55 HOH HOH . J 5 HOH A 145 1245 266 HOH HOH . J 5 HOH A 146 1246 209 HOH HOH . J 5 HOH A 147 1247 238 HOH HOH . J 5 HOH A 148 1248 148 HOH HOH . J 5 HOH A 149 1249 260 HOH HOH . J 5 HOH A 150 1250 265 HOH HOH . J 5 HOH A 151 1251 300 HOH HOH . J 5 HOH A 152 1252 312 HOH HOH . J 5 HOH A 153 1253 233 HOH HOH . J 5 HOH A 154 1254 292 HOH HOH . J 5 HOH A 155 1255 151 HOH HOH . J 5 HOH A 156 1256 85 HOH HOH . J 5 HOH A 157 1257 187 HOH HOH . J 5 HOH A 158 1258 240 HOH HOH . J 5 HOH A 159 1259 234 HOH HOH . J 5 HOH A 160 1260 275 HOH HOH . J 5 HOH A 161 1261 246 HOH HOH . J 5 HOH A 162 1262 111 HOH HOH . J 5 HOH A 163 1263 206 HOH HOH . J 5 HOH A 164 1264 12 HOH HOH . J 5 HOH A 165 1265 214 HOH HOH . J 5 HOH A 166 1266 243 HOH HOH . J 5 HOH A 167 1267 9 HOH HOH . J 5 HOH A 168 1268 115 HOH HOH . K 5 HOH B 1 1101 301 HOH HOH . K 5 HOH B 2 1102 256 HOH HOH . K 5 HOH B 3 1103 272 HOH HOH . K 5 HOH B 4 1104 302 HOH HOH . K 5 HOH B 5 1105 232 HOH HOH . K 5 HOH B 6 1106 315 HOH HOH . K 5 HOH B 7 1107 105 HOH HOH . K 5 HOH B 8 1108 271 HOH HOH . K 5 HOH B 9 1109 135 HOH HOH . K 5 HOH B 10 1110 285 HOH HOH . K 5 HOH B 11 1111 92 HOH HOH . K 5 HOH B 12 1112 6 HOH HOH . K 5 HOH B 13 1113 314 HOH HOH . K 5 HOH B 14 1114 201 HOH HOH . K 5 HOH B 15 1115 47 HOH HOH . K 5 HOH B 16 1116 94 HOH HOH . K 5 HOH B 17 1117 8 HOH HOH . K 5 HOH B 18 1118 165 HOH HOH . K 5 HOH B 19 1119 197 HOH HOH . K 5 HOH B 20 1120 25 HOH HOH . K 5 HOH B 21 1121 107 HOH HOH . K 5 HOH B 22 1122 231 HOH HOH . K 5 HOH B 23 1123 16 HOH HOH . K 5 HOH B 24 1124 164 HOH HOH . K 5 HOH B 25 1125 133 HOH HOH . K 5 HOH B 26 1126 27 HOH HOH . K 5 HOH B 27 1127 254 HOH HOH . K 5 HOH B 28 1128 288 HOH HOH . K 5 HOH B 29 1129 106 HOH HOH . K 5 HOH B 30 1130 274 HOH HOH . K 5 HOH B 31 1131 316 HOH HOH . K 5 HOH B 32 1132 45 HOH HOH . K 5 HOH B 33 1133 5 HOH HOH . K 5 HOH B 34 1134 245 HOH HOH . K 5 HOH B 35 1135 287 HOH HOH . K 5 HOH B 36 1136 51 HOH HOH . K 5 HOH B 37 1137 219 HOH HOH . K 5 HOH B 38 1138 119 HOH HOH . K 5 HOH B 39 1139 20 HOH HOH . K 5 HOH B 40 1140 104 HOH HOH . K 5 HOH B 41 1141 122 HOH HOH . K 5 HOH B 42 1142 196 HOH HOH . K 5 HOH B 43 1143 57 HOH HOH . K 5 HOH B 44 1144 185 HOH HOH . K 5 HOH B 45 1145 182 HOH HOH . K 5 HOH B 46 1146 54 HOH HOH . K 5 HOH B 47 1147 39 HOH HOH . K 5 HOH B 48 1148 43 HOH HOH . K 5 HOH B 49 1149 114 HOH HOH . K 5 HOH B 50 1150 87 HOH HOH . K 5 HOH B 51 1151 91 HOH HOH . K 5 HOH B 52 1152 40 HOH HOH . K 5 HOH B 53 1153 78 HOH HOH . K 5 HOH B 54 1154 141 HOH HOH . K 5 HOH B 55 1155 35 HOH HOH . K 5 HOH B 56 1156 100 HOH HOH . K 5 HOH B 57 1157 163 HOH HOH . K 5 HOH B 58 1158 217 HOH HOH . K 5 HOH B 59 1159 198 HOH HOH . K 5 HOH B 60 1160 125 HOH HOH . K 5 HOH B 61 1161 143 HOH HOH . K 5 HOH B 62 1162 36 HOH HOH . K 5 HOH B 63 1163 134 HOH HOH . K 5 HOH B 64 1164 207 HOH HOH . K 5 HOH B 65 1165 171 HOH HOH . K 5 HOH B 66 1166 136 HOH HOH . K 5 HOH B 67 1167 123 HOH HOH . K 5 HOH B 68 1168 204 HOH HOH . K 5 HOH B 69 1169 101 HOH HOH . K 5 HOH B 70 1170 173 HOH HOH . K 5 HOH B 71 1171 268 HOH HOH . K 5 HOH B 72 1172 313 HOH HOH . K 5 HOH B 73 1173 7 HOH HOH . K 5 HOH B 74 1174 150 HOH HOH . K 5 HOH B 75 1175 229 HOH HOH . K 5 HOH B 76 1176 62 HOH HOH . K 5 HOH B 77 1177 77 HOH HOH . K 5 HOH B 78 1178 149 HOH HOH . K 5 HOH B 79 1179 168 HOH HOH . K 5 HOH B 80 1180 37 HOH HOH . K 5 HOH B 81 1181 66 HOH HOH . K 5 HOH B 82 1182 303 HOH HOH . K 5 HOH B 83 1183 31 HOH HOH . K 5 HOH B 84 1184 110 HOH HOH . K 5 HOH B 85 1185 73 HOH HOH . K 5 HOH B 86 1186 97 HOH HOH . K 5 HOH B 87 1187 116 HOH HOH . K 5 HOH B 88 1188 241 HOH HOH . K 5 HOH B 89 1189 86 HOH HOH . K 5 HOH B 90 1190 74 HOH HOH . K 5 HOH B 91 1191 255 HOH HOH . K 5 HOH B 92 1192 228 HOH HOH . K 5 HOH B 93 1193 120 HOH HOH . K 5 HOH B 94 1194 222 HOH HOH . K 5 HOH B 95 1195 80 HOH HOH . K 5 HOH B 96 1196 218 HOH HOH . K 5 HOH B 97 1197 102 HOH HOH . K 5 HOH B 98 1198 305 HOH HOH . K 5 HOH B 99 1199 98 HOH HOH . K 5 HOH B 100 1200 161 HOH HOH . K 5 HOH B 101 1201 248 HOH HOH . K 5 HOH B 102 1202 124 HOH HOH . K 5 HOH B 103 1203 121 HOH HOH . K 5 HOH B 104 1204 79 HOH HOH . K 5 HOH B 105 1205 295 HOH HOH . K 5 HOH B 106 1206 156 HOH HOH . K 5 HOH B 107 1207 126 HOH HOH . K 5 HOH B 108 1208 147 HOH HOH . K 5 HOH B 109 1209 250 HOH HOH . K 5 HOH B 110 1210 237 HOH HOH . K 5 HOH B 111 1211 166 HOH HOH . K 5 HOH B 112 1212 267 HOH HOH . K 5 HOH B 113 1213 239 HOH HOH . K 5 HOH B 114 1214 159 HOH HOH . K 5 HOH B 115 1215 158 HOH HOH . K 5 HOH B 116 1216 82 HOH HOH . K 5 HOH B 117 1217 230 HOH HOH . K 5 HOH B 118 1218 251 HOH HOH . K 5 HOH B 119 1219 289 HOH HOH . K 5 HOH B 120 1220 296 HOH HOH . K 5 HOH B 121 1221 154 HOH HOH . K 5 HOH B 122 1222 46 HOH HOH . K 5 HOH B 123 1223 280 HOH HOH . K 5 HOH B 124 1224 210 HOH HOH . K 5 HOH B 125 1225 257 HOH HOH . K 5 HOH B 126 1226 277 HOH HOH . K 5 HOH B 127 1227 181 HOH HOH . K 5 HOH B 128 1228 261 HOH HOH . K 5 HOH B 129 1229 304 HOH HOH . K 5 HOH B 130 1230 205 HOH HOH . K 5 HOH B 131 1231 93 HOH HOH . K 5 HOH B 132 1232 24 HOH HOH . K 5 HOH B 133 1233 186 HOH HOH . K 5 HOH B 134 1234 264 HOH HOH . K 5 HOH B 135 1235 63 HOH HOH . K 5 HOH B 136 1236 236 HOH HOH . K 5 HOH B 137 1237 67 HOH HOH . K 5 HOH B 138 1238 259 HOH HOH . K 5 HOH B 139 1239 262 HOH HOH . K 5 HOH B 140 1240 279 HOH HOH . K 5 HOH B 141 1241 215 HOH HOH . K 5 HOH B 142 1242 144 HOH HOH . K 5 HOH B 143 1243 89 HOH HOH . K 5 HOH B 144 1244 263 HOH HOH . K 5 HOH B 145 1245 160 HOH HOH . K 5 HOH B 146 1246 224 HOH HOH . K 5 HOH B 147 1247 212 HOH HOH . K 5 HOH B 148 1248 203 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB GDP . . . F 4 -9.064 2.529 -6.626 1 23.61 ? PB GDP 1004 A 1 HETATM 2 O O1B GDP . . . F 4 -9.979 2.128 -7.868 1 22.15 ? O1B GDP 1004 A 1 HETATM 3 O O2B GDP . . . F 4 -9.721 3.339 -5.562 1 21.43 ? O2B GDP 1004 A 1 HETATM 4 O O3B GDP . . . F 4 -8.266 1.241 -6.139 1 23.82 ? O3B GDP 1004 A 1 HETATM 5 O O3A GDP . . . F 4 -7.903 3.367 -7.413 1 25.02 ? O3A GDP 1004 A 1 HETATM 6 P PA GDP . . . F 4 -7.218 4.727 -6.852 1 28.06 ? PA GDP 1004 A 1 HETATM 7 O O1A GDP . . . F 4 -8.103 5.902 -6.73 1 28.83 ? O1A GDP 1004 A 1 HETATM 8 O O2A GDP . . . F 4 -6.393 4.288 -5.569 1 28 ? O2A GDP 1004 A 1 HETATM 9 O O5' GDP . . . F 4 -6.119 4.871 -7.995 1 29.2 ? O5' GDP 1004 A 1 HETATM 10 C C5' GDP . . . F 4 -5.169 3.844 -8.291 1 30.87 ? C5' GDP 1004 A 1 HETATM 11 C C4' GDP . . . F 4 -3.886 4.485 -8.86 1 32.71 ? C4' GDP 1004 A 1 HETATM 12 O O4' GDP . . . F 4 -4.08 4.992 -10.187 1 32.63 ? O4' GDP 1004 A 1 HETATM 13 C C3' GDP . . . F 4 -3.31 5.659 -8.034 1 34.26 ? C3' GDP 1004 A 1 HETATM 14 O O3' GDP . . . F 4 -1.879 5.535 -8.051 1 35.41 ? O3' GDP 1004 A 1 HETATM 15 C C2' GDP . . . F 4 -3.827 6.899 -8.797 1 34.2 ? C2' GDP 1004 A 1 HETATM 16 O O2' GDP . . . F 4 -3.041 8.101 -8.647 1 35.99 ? O2' GDP 1004 A 1 HETATM 17 C C1' GDP . . . F 4 -3.792 6.402 -10.253 1 33.46 ? C1' GDP 1004 A 1 HETATM 18 N N9 GDP . . . F 4 -4.849 7.042 -11.001 1 33.12 ? N9 GDP 1004 A 1 HETATM 19 C C8 GDP . . . F 4 -6.118 7.038 -10.7 1 32.91 ? C8 GDP 1004 A 1 HETATM 20 N N7 GDP . . . F 4 -6.787 7.652 -11.577 1 32.36 ? N7 GDP 1004 A 1 HETATM 21 C C5 GDP . . . F 4 -5.875 8.097 -12.59 1 32.96 ? C5 GDP 1004 A 1 HETATM 22 C C6 GDP . . . F 4 -5.954 8.821 -13.851 1 33.08 ? C6 GDP 1004 A 1 HETATM 23 O O6 GDP . . . F 4 -7.041 9.153 -14.29 1 33.05 ? O6 GDP 1004 A 1 HETATM 24 N N1 GDP . . . F 4 -4.777 8.997 -14.492 1 33.63 ? N1 GDP 1004 A 1 HETATM 25 C C2 GDP . . . F 4 -3.573 8.563 -14.007 1 34.58 ? C2 GDP 1004 A 1 HETATM 26 N N2 GDP . . . F 4 -2.522 8.829 -14.734 1 35.09 ? N2 GDP 1004 A 1 HETATM 27 N N3 GDP . . . F 4 -3.489 7.896 -12.902 1 33.91 ? N3 GDP 1004 A 1 HETATM 28 C C4 GDP . . . F 4 -4.697 7.636 -12.147 1 33.47 ? C4 GDP 1004 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #