data_8AQM # _model_server_result.job_id 9tkX2ZZvzczHd4g1PuFFgg _model_server_result.datetime_utc '2024-11-14 11:27:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8aqm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1001}' # _entry.id 8AQM # _exptl.entry_id 8AQM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 407.807 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-chloranyl-~{N}-[2-(3-methylphenyl)-1,3-benzoxazol-5-yl]-5-nitro-benzamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8AQM _cell.length_a 61.06 _cell.length_b 94.53 _cell.length_c 114.84 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AQM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,G 1 1 B,D,F,H,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 87 A CYS 285 1_555 E C5 O2O . A O2O 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.645 ? covale ? covale2 B SG CYS 87 B CYS 285 1_555 F C5 O2O . B O2O 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.651 ? # _chem_comp.formula 'C21 H14 Cl N3 O4' _chem_comp.formula_weight 407.807 _chem_comp.id O2O _chem_comp.mon_nstd_flag . _chem_comp.name 2-chloranyl-~{N}-[2-(3-methylphenyl)-1,3-benzoxazol-5-yl]-5-nitro-benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C19 O2O doub 237 n y C18 C17 O2O sing 238 n y C19 C14 O2O sing 239 n y C17 C16 O2O doub 240 n y O2 C6 O2O doub 241 n n N2 C10 O2O doub 242 n y N2 C9 O2O sing 243 n y C14 C10 O2O sing 244 n n C14 C15 O2O doub 245 n y C5 C4 O2O doub 246 n y C5 C O2O sing 247 n y C16 C15 O2O sing 248 n y C16 C20 O2O sing 249 n n C10 O3 O2O sing 250 n y C8 C9 O2O doub 251 n y C8 C7 O2O sing 252 n y C6 C O2O sing 253 n n C6 N1 O2O sing 254 n n C9 C11 O2O sing 255 n y C4 C3 O2O sing 256 n y C C1 O2O doub 257 n y C7 N1 O2O sing 258 n n C7 C13 O2O doub 259 n y O3 C11 O2O sing 260 n y C3 C2 O2O doub 261 n y C11 C12 O2O doub 262 n y C1 C2 O2O sing 263 n y C2 N O2O sing 264 n n C13 C12 O2O sing 265 n y N O O2O sing 266 n n N O1 O2O doub 267 n n N1 H1 O2O sing 268 n n C4 H2 O2O sing 269 n n C8 H4 O2O sing 270 n n C13 H5 O2O sing 271 n n C15 H6 O2O sing 272 n n C17 H7 O2O sing 273 n n C20 H8 O2O sing 274 n n C20 H9 O2O sing 275 n n C20 H10 O2O sing 276 n n C1 H11 O2O sing 277 n n C3 H12 O2O sing 278 n n C12 H13 O2O sing 279 n n C18 H14 O2O sing 280 n n C19 H15 O2O sing 281 n n C5 CL1 O2O sing 282 n n # _atom_sites.entry_id 8AQM _atom_sites.fract_transf_matrix[1][1] 0.016377 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010579 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008708 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 O2O A 1 1001 1001 O2O LIG . F 3 O2O B 1 1001 1001 O2O LIG . G 4 HOH A 1 1101 15 HOH HOH . G 4 HOH A 2 1102 100 HOH HOH . G 4 HOH A 3 1103 38 HOH HOH . G 4 HOH A 4 1104 160 HOH HOH . G 4 HOH A 5 1105 6 HOH HOH . G 4 HOH A 6 1106 23 HOH HOH . G 4 HOH A 7 1107 3 HOH HOH . G 4 HOH A 8 1108 29 HOH HOH . G 4 HOH A 9 1109 131 HOH HOH . G 4 HOH A 10 1110 190 HOH HOH . G 4 HOH A 11 1111 178 HOH HOH . G 4 HOH A 12 1112 9 HOH HOH . G 4 HOH A 13 1113 179 HOH HOH . G 4 HOH A 14 1114 83 HOH HOH . G 4 HOH A 15 1115 145 HOH HOH . G 4 HOH A 16 1116 64 HOH HOH . G 4 HOH A 17 1117 68 HOH HOH . G 4 HOH A 18 1118 101 HOH HOH . G 4 HOH A 19 1119 4 HOH HOH . G 4 HOH A 20 1120 37 HOH HOH . G 4 HOH A 21 1121 117 HOH HOH . G 4 HOH A 22 1122 44 HOH HOH . G 4 HOH A 23 1123 106 HOH HOH . G 4 HOH A 24 1124 45 HOH HOH . G 4 HOH A 25 1125 36 HOH HOH . G 4 HOH A 26 1126 57 HOH HOH . G 4 HOH A 27 1127 53 HOH HOH . G 4 HOH A 28 1128 55 HOH HOH . G 4 HOH A 29 1129 78 HOH HOH . G 4 HOH A 30 1130 43 HOH HOH . G 4 HOH A 31 1131 27 HOH HOH . G 4 HOH A 32 1132 71 HOH HOH . G 4 HOH A 33 1133 14 HOH HOH . G 4 HOH A 34 1134 102 HOH HOH . G 4 HOH A 35 1135 46 HOH HOH . G 4 HOH A 36 1136 62 HOH HOH . G 4 HOH A 37 1137 61 HOH HOH . G 4 HOH A 38 1138 111 HOH HOH . G 4 HOH A 39 1139 47 HOH HOH . G 4 HOH A 40 1140 79 HOH HOH . G 4 HOH A 41 1141 80 HOH HOH . G 4 HOH A 42 1142 5 HOH HOH . G 4 HOH A 43 1143 181 HOH HOH . G 4 HOH A 44 1144 42 HOH HOH . G 4 HOH A 45 1145 158 HOH HOH . G 4 HOH A 46 1146 186 HOH HOH . G 4 HOH A 47 1147 20 HOH HOH . G 4 HOH A 48 1148 154 HOH HOH . G 4 HOH A 49 1149 51 HOH HOH . G 4 HOH A 50 1150 25 HOH HOH . G 4 HOH A 51 1151 148 HOH HOH . G 4 HOH A 52 1152 125 HOH HOH . G 4 HOH A 53 1153 11 HOH HOH . G 4 HOH A 54 1154 12 HOH HOH . G 4 HOH A 55 1155 156 HOH HOH . G 4 HOH A 56 1156 173 HOH HOH . G 4 HOH A 57 1157 35 HOH HOH . G 4 HOH A 58 1158 163 HOH HOH . G 4 HOH A 59 1159 66 HOH HOH . G 4 HOH A 60 1160 170 HOH HOH . G 4 HOH A 61 1161 124 HOH HOH . G 4 HOH A 62 1162 150 HOH HOH . G 4 HOH A 63 1163 75 HOH HOH . G 4 HOH A 64 1164 40 HOH HOH . G 4 HOH A 65 1165 74 HOH HOH . G 4 HOH A 66 1166 2 HOH HOH . G 4 HOH A 67 1167 88 HOH HOH . G 4 HOH A 68 1168 59 HOH HOH . G 4 HOH A 69 1169 21 HOH HOH . G 4 HOH A 70 1170 192 HOH HOH . G 4 HOH A 71 1171 19 HOH HOH . G 4 HOH A 72 1172 146 HOH HOH . G 4 HOH A 73 1173 1 HOH HOH . G 4 HOH A 74 1174 85 HOH HOH . G 4 HOH A 75 1175 63 HOH HOH . G 4 HOH A 76 1176 112 HOH HOH . G 4 HOH A 77 1177 118 HOH HOH . G 4 HOH A 78 1178 121 HOH HOH . G 4 HOH A 79 1179 130 HOH HOH . G 4 HOH A 80 1180 65 HOH HOH . G 4 HOH A 81 1181 166 HOH HOH . G 4 HOH A 82 1182 147 HOH HOH . G 4 HOH A 83 1183 108 HOH HOH . G 4 HOH A 84 1184 157 HOH HOH . G 4 HOH A 85 1185 50 HOH HOH . G 4 HOH A 86 1186 177 HOH HOH . G 4 HOH A 87 1187 56 HOH HOH . G 4 HOH A 88 1188 81 HOH HOH . G 4 HOH A 89 1189 180 HOH HOH . G 4 HOH A 90 1190 141 HOH HOH . G 4 HOH A 91 1191 87 HOH HOH . G 4 HOH A 92 1192 142 HOH HOH . G 4 HOH A 93 1193 89 HOH HOH . G 4 HOH A 94 1194 126 HOH HOH . G 4 HOH A 95 1195 135 HOH HOH . G 4 HOH A 96 1196 133 HOH HOH . G 4 HOH A 97 1197 123 HOH HOH . G 4 HOH A 98 1198 86 HOH HOH . G 4 HOH A 99 1199 72 HOH HOH . G 4 HOH A 100 1200 96 HOH HOH . G 4 HOH A 101 1201 120 HOH HOH . G 4 HOH A 102 1202 92 HOH HOH . G 4 HOH A 103 1203 191 HOH HOH . G 4 HOH A 104 1204 113 HOH HOH . G 4 HOH A 105 1205 140 HOH HOH . G 4 HOH A 106 1206 114 HOH HOH . G 4 HOH A 107 1207 95 HOH HOH . G 4 HOH A 108 1208 93 HOH HOH . G 4 HOH A 109 1209 171 HOH HOH . G 4 HOH A 110 1210 122 HOH HOH . G 4 HOH A 111 1211 134 HOH HOH . G 4 HOH A 112 1212 119 HOH HOH . H 4 HOH B 1 1101 168 HOH HOH . H 4 HOH B 2 1102 107 HOH HOH . H 4 HOH B 3 1103 127 HOH HOH . H 4 HOH B 4 1104 103 HOH HOH . H 4 HOH B 5 1105 104 HOH HOH . H 4 HOH B 6 1106 8 HOH HOH . H 4 HOH B 7 1107 151 HOH HOH . H 4 HOH B 8 1108 109 HOH HOH . H 4 HOH B 9 1109 17 HOH HOH . H 4 HOH B 10 1110 138 HOH HOH . H 4 HOH B 11 1111 16 HOH HOH . H 4 HOH B 12 1112 31 HOH HOH . H 4 HOH B 13 1113 10 HOH HOH . H 4 HOH B 14 1114 60 HOH HOH . H 4 HOH B 15 1115 84 HOH HOH . H 4 HOH B 16 1116 169 HOH HOH . H 4 HOH B 17 1117 28 HOH HOH . H 4 HOH B 18 1118 105 HOH HOH . H 4 HOH B 19 1119 41 HOH HOH . H 4 HOH B 20 1120 99 HOH HOH . H 4 HOH B 21 1121 164 HOH HOH . H 4 HOH B 22 1122 116 HOH HOH . H 4 HOH B 23 1123 7 HOH HOH . H 4 HOH B 24 1124 149 HOH HOH . H 4 HOH B 25 1125 70 HOH HOH . H 4 HOH B 26 1126 155 HOH HOH . H 4 HOH B 27 1127 34 HOH HOH . H 4 HOH B 28 1128 32 HOH HOH . H 4 HOH B 29 1129 132 HOH HOH . H 4 HOH B 30 1130 189 HOH HOH . H 4 HOH B 31 1131 33 HOH HOH . H 4 HOH B 32 1132 39 HOH HOH . H 4 HOH B 33 1133 115 HOH HOH . H 4 HOH B 34 1134 98 HOH HOH . H 4 HOH B 35 1135 76 HOH HOH . H 4 HOH B 36 1136 97 HOH HOH . H 4 HOH B 37 1137 165 HOH HOH . H 4 HOH B 38 1138 67 HOH HOH . H 4 HOH B 39 1139 54 HOH HOH . H 4 HOH B 40 1140 152 HOH HOH . H 4 HOH B 41 1141 167 HOH HOH . H 4 HOH B 42 1142 143 HOH HOH . H 4 HOH B 43 1143 73 HOH HOH . H 4 HOH B 44 1144 159 HOH HOH . H 4 HOH B 45 1145 153 HOH HOH . H 4 HOH B 46 1146 77 HOH HOH . H 4 HOH B 47 1147 161 HOH HOH . H 4 HOH B 48 1148 136 HOH HOH . H 4 HOH B 49 1149 22 HOH HOH . H 4 HOH B 50 1150 30 HOH HOH . H 4 HOH B 51 1151 26 HOH HOH . H 4 HOH B 52 1152 24 HOH HOH . H 4 HOH B 53 1153 69 HOH HOH . H 4 HOH B 54 1154 144 HOH HOH . H 4 HOH B 55 1155 129 HOH HOH . H 4 HOH B 56 1156 82 HOH HOH . H 4 HOH B 57 1157 58 HOH HOH . H 4 HOH B 58 1158 18 HOH HOH . H 4 HOH B 59 1159 52 HOH HOH . H 4 HOH B 60 1160 182 HOH HOH . H 4 HOH B 61 1161 162 HOH HOH . H 4 HOH B 62 1162 13 HOH HOH . H 4 HOH B 63 1163 110 HOH HOH . H 4 HOH B 64 1164 139 HOH HOH . H 4 HOH B 65 1165 128 HOH HOH . H 4 HOH B 66 1166 90 HOH HOH . H 4 HOH B 67 1167 48 HOH HOH . H 4 HOH B 68 1168 174 HOH HOH . H 4 HOH B 69 1169 187 HOH HOH . H 4 HOH B 70 1170 91 HOH HOH . H 4 HOH B 71 1171 172 HOH HOH . H 4 HOH B 72 1172 188 HOH HOH . H 4 HOH B 73 1173 183 HOH HOH . H 4 HOH B 74 1174 94 HOH HOH . H 4 HOH B 75 1175 137 HOH HOH . H 4 HOH B 76 1176 184 HOH HOH . H 4 HOH B 77 1177 185 HOH HOH . H 4 HOH B 78 1178 175 HOH HOH . I 4 HOH D 1 2401 49 HOH HOH . I 4 HOH D 2 2402 176 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 O2O . . . E 3 1.286 32.343 -21.424 1 36.37 ? N1 O2O 1001 A 1 HETATM 2 C C4 O2O . . . E 3 2.896 28.109 -22.352 1 42.32 ? C4 O2O 1001 A 1 HETATM 3 C C5 O2O . . . E 3 2.199 29.235 -22.793 1 42.55 ? C5 O2O 1001 A 1 HETATM 4 C C6 O2O . . . E 3 1.834 31.684 -22.482 1 38.02 ? C6 O2O 1001 A 1 HETATM 5 C C7 O2O . . . E 3 0.688 33.554 -21.478 1 40.32 ? C7 O2O 1001 A 1 HETATM 6 C C8 O2O . . . E 3 -0.072 34.129 -22.505 1 38.52 ? C8 O2O 1001 A 1 HETATM 7 C C10 O2O . . . E 3 -1.577 37.305 -22.586 1 39.6 ? C10 O2O 1001 A 1 HETATM 8 C C13 O2O . . . E 3 0.866 34.332 -20.342 1 43.15 ? C13 O2O 1001 A 1 HETATM 9 C C15 O2O . . . E 3 -2.75 39.331 -22.239 1 43.79 ? C15 O2O 1001 A 1 HETATM 10 C C17 O2O . . . E 3 -4.121 40.235 -24.048 1 43.76 ? C17 O2O 1001 A 1 HETATM 11 C C20 O2O . . . E 3 -3.976 41.394 -21.916 1 45.45 ? C20 O2O 1001 A 1 HETATM 12 O O1 O2O . . . E 3 5.326 30.883 -18.934 1 57.32 ? O1 O2O 1001 A 1 HETATM 13 N N O2O . . . E 3 5.013 29.444 -19.691 1 44.83 ? N O2O 1001 A 1 HETATM 14 O O O2O . . . E 3 5.637 28.303 -19.23 1 47.72 ? O O2O 1001 A 1 HETATM 15 C C2 O2O . . . E 3 4.118 29.349 -20.703 1 42.76 ? C2 O2O 1001 A 1 HETATM 16 C C1 O2O . . . E 3 3.426 30.467 -21.129 1 41.86 ? C1 O2O 1001 A 1 HETATM 17 C C3 O2O . . . E 3 3.851 28.143 -21.347 1 43.9 ? C3 O2O 1001 A 1 HETATM 18 C C O2O . . . E 3 2.468 30.456 -22.147 1 42.53 ? C O2O 1001 A 1 HETATM 19 O O2 O2O . . . E 3 1.823 32.065 -23.651 1 36.94 ? O2 O2O 1001 A 1 HETATM 20 C C12 O2O . . . E 3 0.294 35.583 -20.214 1 39.41 ? C12 O2O 1001 A 1 HETATM 21 C C11 O2O . . . E 3 -0.396 36.08 -21.231 1 40.97 ? C11 O2O 1001 A 1 HETATM 22 O O3 O2O . . . E 3 -1.052 37.326 -21.364 1 39.24 ? O3 O2O 1001 A 1 HETATM 23 C C9 O2O . . . E 3 -0.571 35.373 -22.365 1 38.87 ? C9 O2O 1001 A 1 HETATM 24 N N2 O2O . . . E 3 -1.341 36.127 -23.17 1 40.23 ? N2 O2O 1001 A 1 HETATM 25 C C14 O2O . . . E 3 -2.345 38.274 -23.076 1 42.73 ? C14 O2O 1001 A 1 HETATM 26 C C16 O2O . . . E 3 -3.619 40.322 -22.741 1 45.64 ? C16 O2O 1001 A 1 HETATM 27 C C18 O2O . . . E 3 -3.759 39.166 -24.859 1 40.18 ? C18 O2O 1001 A 1 HETATM 28 C C19 O2O . . . E 3 -2.87 38.202 -24.376 1 42 ? C19 O2O 1001 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 231 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 28 #