data_8ARI # _model_server_result.job_id 4Q5KeNBUECMCNyyvQCqdiw _model_server_result.datetime_utc '2024-11-22 16:09:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ari # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"VA","auth_seq_id":501}' # _entry.id 8ARI # _exptl.entry_id 8ARI _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 24 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ARI _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ARI _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 34-meric _pdbx_struct_assembly.oligomeric_count 34 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 IA N N ? 3 JA N N ? 3 KA N N ? 3 LA N N ? 3 MA N N ? 3 NA N N ? 3 OA N N ? 3 PA N N ? 3 QA N N ? 3 RA N N ? 3 SA N N ? 3 TA N N ? 3 UA N N ? 3 VA N N ? 3 WA N N ? 3 XA N N ? 3 YA N N ? 3 ZA N N ? 3 AB N N ? 3 BB N N ? 3 CB N N ? 3 DB N N ? 3 EB N N ? 3 FB N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 235 n n PA O2A NAD sing 236 n n PA O5B NAD sing 237 n n PA O3 NAD sing 238 n n O2A HOA2 NAD sing 239 n n O5B C5B NAD sing 240 n n C5B C4B NAD sing 241 n n C5B H51A NAD sing 242 n n C5B H52A NAD sing 243 n n C4B O4B NAD sing 244 n n C4B C3B NAD sing 245 n n C4B H4B NAD sing 246 n n O4B C1B NAD sing 247 n n C3B O3B NAD sing 248 n n C3B C2B NAD sing 249 n n C3B H3B NAD sing 250 n n O3B HO3A NAD sing 251 n n C2B O2B NAD sing 252 n n C2B C1B NAD sing 253 n n C2B H2B NAD sing 254 n n O2B HO2A NAD sing 255 n n C1B N9A NAD sing 256 n n C1B H1B NAD sing 257 n n N9A C8A NAD sing 258 n y N9A C4A NAD sing 259 n y C8A N7A NAD doub 260 n y C8A H8A NAD sing 261 n n N7A C5A NAD sing 262 n y C5A C6A NAD sing 263 n y C5A C4A NAD doub 264 n y C6A N6A NAD sing 265 n n C6A N1A NAD doub 266 n y N6A H61A NAD sing 267 n n N6A H62A NAD sing 268 n n N1A C2A NAD sing 269 n y C2A N3A NAD doub 270 n y C2A H2A NAD sing 271 n n N3A C4A NAD sing 272 n y O3 PN NAD sing 273 n n PN O1N NAD doub 274 n n PN O2N NAD sing 275 n n PN O5D NAD sing 276 n n O5D C5D NAD sing 277 n n C5D C4D NAD sing 278 n n C5D H51N NAD sing 279 n n C5D H52N NAD sing 280 n n C4D O4D NAD sing 281 n n C4D C3D NAD sing 282 n n C4D H4D NAD sing 283 n n O4D C1D NAD sing 284 n n C3D O3D NAD sing 285 n n C3D C2D NAD sing 286 n n C3D H3D NAD sing 287 n n O3D HO3N NAD sing 288 n n C2D O2D NAD sing 289 n n C2D C1D NAD sing 290 n n C2D H2D NAD sing 291 n n O2D HO2N NAD sing 292 n n C1D N1N NAD sing 293 n n C1D H1D NAD sing 294 n n N1N C2N NAD sing 295 n y N1N C6N NAD doub 296 n y C2N C3N NAD doub 297 n y C2N H2N NAD sing 298 n n C3N C7N NAD sing 299 n n C3N C4N NAD sing 300 n y C7N O7N NAD doub 301 n n C7N N7N NAD sing 302 n n N7N H71N NAD sing 303 n n N7N H72N NAD sing 304 n n C4N C5N NAD doub 305 n y C4N H4N NAD sing 306 n n C5N C6N NAD sing 307 n y C5N H5N NAD sing 308 n n C6N H6N NAD sing 309 n n # _atom_sites.entry_id 8ARI _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code IA 3 NAD A 1 501 401 NAD NAD . JA 3 NAD B 1 501 401 NAD NAD . KA 3 NAD C 1 501 401 NAD NAD . LA 3 NAD D 1 501 401 NAD NAD . MA 3 NAD E 1 501 401 NAD NAD . NA 3 NAD F 1 501 401 NAD NAD . OA 3 NAD G 1 501 401 NAD NAD . PA 3 NAD H 1 501 401 NAD NAD . QA 3 NAD I 1 501 401 NAD NAD . RA 3 NAD J 1 501 401 NAD NAD . SA 3 NAD K 1 501 401 NAD NAD . TA 3 NAD L 1 501 401 NAD NAD . UA 3 NAD M 1 501 401 NAD NAD . VA 3 NAD N 1 501 401 NAD NAD . WA 3 NAD O 1 501 401 NAD NAD . XA 3 NAD P 1 501 401 NAD NAD . YA 3 NAD Q 1 501 401 NAD NAD . ZA 3 NAD R 1 501 401 NAD NAD . AB 3 NAD S 1 501 401 NAD NAD . BB 3 NAD T 1 501 401 NAD NAD . CB 3 NAD U 1 501 401 NAD NAD . DB 3 NAD V 1 501 401 NAD NAD . EB 3 NAD W 1 501 401 NAD NAD . FB 3 NAD X 1 501 401 NAD NAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . VA 3 202.31 251.904 223.578 1 24.71 ? PA NAD 501 N 1 HETATM 2 O O1A NAD . . . VA 3 200.91 251.967 223.065 1 24.71 ? O1A NAD 501 N 1 HETATM 3 O O2A NAD . . . VA 3 203.309 252.862 223.018 1 24.71 ? O2A NAD 501 N 1 HETATM 4 O O5B NAD . . . VA 3 202.852 250.405 223.402 1 24.71 ? O5B NAD 501 N 1 HETATM 5 C C5B NAD . . . VA 3 202.066 249.299 223.922 1 24.71 ? C5B NAD 501 N 1 HETATM 6 C C4B NAD . . . VA 3 202.608 248.005 223.365 1 24.71 ? C4B NAD 501 N 1 HETATM 7 O O4B NAD . . . VA 3 201.853 246.884 223.899 1 24.71 ? O4B NAD 501 N 1 HETATM 8 C C3B NAD . . . VA 3 202.552 247.843 221.836 1 24.71 ? C3B NAD 501 N 1 HETATM 9 O O3B NAD . . . VA 3 203.805 247.367 221.362 1 24.71 ? O3B NAD 501 N 1 HETATM 10 C C2B NAD . . . VA 3 201.491 246.754 221.646 1 24.71 ? C2B NAD 501 N 1 HETATM 11 O O2B NAD . . . VA 3 201.606 246.046 220.431 1 24.71 ? O2B NAD 501 N 1 HETATM 12 C C1B NAD . . . VA 3 201.767 245.915 222.885 1 24.71 ? C1B NAD 501 N 1 HETATM 13 N N9A NAD . . . VA 3 200.715 244.958 223.21 1 24.71 ? N9A NAD 501 N 1 HETATM 14 C C8A NAD . . . VA 3 199.362 245.153 223.097 1 24.71 ? C8A NAD 501 N 1 HETATM 15 N N7A NAD . . . VA 3 198.656 244.11 223.454 1 24.71 ? N7A NAD 501 N 1 HETATM 16 C C5A NAD . . . VA 3 199.601 243.161 223.814 1 24.71 ? C5A NAD 501 N 1 HETATM 17 C C6A NAD . . . VA 3 199.484 241.837 224.279 1 24.71 ? C6A NAD 501 N 1 HETATM 18 N N6A NAD . . . VA 3 198.322 241.219 224.465 1 24.71 ? N6A NAD 501 N 1 HETATM 19 N N1A NAD . . . VA 3 200.628 241.164 224.543 1 24.71 ? N1A NAD 501 N 1 HETATM 20 C C2A NAD . . . VA 3 201.795 241.79 224.352 1 24.71 ? C2A NAD 501 N 1 HETATM 21 N N3A NAD . . . VA 3 202.026 243.027 223.923 1 24.71 ? N3A NAD 501 N 1 HETATM 22 C C4A NAD . . . VA 3 200.875 243.671 223.666 1 24.71 ? C4A NAD 501 N 1 HETATM 23 O O3 NAD . . . VA 3 202.278 252.057 225.175 1 24.71 ? O3 NAD 501 N 1 HETATM 24 P PN NAD . . . VA 3 203.294 252.635 226.275 1 24.71 ? PN NAD 501 N 1 HETATM 25 O O1N NAD . . . VA 3 203.415 254.113 226.101 1 24.71 ? O1N NAD 501 N 1 HETATM 26 O O2N NAD . . . VA 3 204.545 251.822 226.26 1 24.71 ? O2N NAD 501 N 1 HETATM 27 O O5D NAD . . . VA 3 202.482 252.322 227.62 1 24.71 ? O5D NAD 501 N 1 HETATM 28 C C5D NAD . . . VA 3 202.353 250.942 228.035 1 24.71 ? C5D NAD 501 N 1 HETATM 29 C C4D NAD . . . VA 3 201.402 250.865 229.203 1 24.71 ? C4D NAD 501 N 1 HETATM 30 O O4D NAD . . . VA 3 201.899 251.7 230.271 1 24.71 ? O4D NAD 501 N 1 HETATM 31 C C3D NAD . . . VA 3 199.968 251.35 228.939 1 24.71 ? C3D NAD 501 N 1 HETATM 32 O O3D NAD . . . VA 3 199.042 250.398 229.445 1 24.71 ? O3D NAD 501 N 1 HETATM 33 C C2D NAD . . . VA 3 199.921 252.642 229.76 1 24.71 ? C2D NAD 501 N 1 HETATM 34 O O2D NAD . . . VA 3 198.614 253.041 230.14 1 24.71 ? O2D NAD 501 N 1 HETATM 35 C C1D NAD . . . VA 3 200.796 252.275 230.949 1 24.71 ? C1D NAD 501 N 1 HETATM 36 N N1N NAD . . . VA 3 201.271 253.474 231.696 1 24.71 ? N1N NAD 501 N 1 HETATM 37 C C2N NAD . . . VA 3 201.233 253.489 233.068 1 24.71 ? C2N NAD 501 N 1 HETATM 38 C C3N NAD . . . VA 3 201.657 254.61 233.769 1 24.71 ? C3N NAD 501 N 1 HETATM 39 C C7N NAD . . . VA 3 201.585 254.588 235.275 1 24.71 ? C7N NAD 501 N 1 HETATM 40 O O7N NAD . . . VA 3 201.235 253.56 235.848 1 24.71 ? O7N NAD 501 N 1 HETATM 41 N N7N NAD . . . VA 3 201.907 255.698 235.921 1 24.71 ? N7N NAD 501 N 1 HETATM 42 C C4N NAD . . . VA 3 202.141 255.705 233.065 1 24.71 ? C4N NAD 501 N 1 HETATM 43 C C5N NAD . . . VA 3 202.194 255.666 231.69 1 24.71 ? C5N NAD 501 N 1 HETATM 44 C C6N NAD . . . VA 3 201.75 254.545 231.026 1 24.71 ? C6N NAD 501 N 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 75 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #