data_8ARP # _model_server_result.job_id 3vD8tCvwz9LzqHI-WIiDYQ _model_server_result.datetime_utc '2025-02-05 17:59:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8arp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":2005}' # _entry.id 8ARP # _exptl.entry_id 8ARP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ARP _cell.length_a 145.939 _cell.length_b 168.843 _cell.length_c 168.87 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ARP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 I N N ? 4 N N N ? 4 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A N GLY 160 A GLY 160 1_555 G O1B ADP . A ADP 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.299 ? covale ? covale2 B N GLY 160 B GLY 160 1_555 J O3B ADP . B ADP 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.294 ? covale ? covale3 D CZ ARG 422 D ARG 422 1_555 O O2A ADP . D ADP 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? covale ? covale4 D NH1 ARG 422 D ARG 422 1_555 O O2A ADP . D ADP 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.259 ? covale ? covale5 E NZ LYS 163 E LYS 163 1_555 Q O2B ADP . E ADP 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.297 ? metalc ? metalc1 A OG1 THR 164 A THR 164 1_555 I MG MG . A MG 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.95 ? metalc ? metalc2 A OD2 ASP 267 A ASP 267 1_555 I MG MG . A MG 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? metalc ? metalc3 G O2B ADP . A ADP 2001 1_555 I MG MG . A MG 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc4 C OE2 GLU 268 C GLU 268 1_555 N MG MG . C MG 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc5 L O1B ADP . C ADP 2001 1_555 N MG MG . C MG 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc6 L O2B ADP . C ADP 2001 1_555 N MG MG . C MG 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc7 E OD2 ASP 267 E ASP 267 1_555 U MG MG . E MG 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8ARP _atom_sites.fract_transf_matrix[1][1] 0.006852 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005923 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005922 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 ADP A 1 2001 2001 ADP ADP . H 3 SO4 A 1 2002 1 SO4 SO4 . I 4 MG A 1 2003 1 MG MG . J 2 ADP B 1 2001 2001 ADP ADP . K 3 SO4 B 1 2002 2 SO4 SO4 . L 2 ADP C 1 2001 2001 ADP ADP . M 3 SO4 C 1 2002 5 SO4 SO4 . N 4 MG C 1 2003 2 MG MG . O 2 ADP D 1 2001 2001 ADP ADP . P 3 SO4 D 1 2002 4 SO4 SO4 . Q 2 ADP E 1 2001 2001 ADP ADP . R 3 SO4 E 1 2002 3 SO4 SO4 . S 3 SO4 E 1 2003 7 SO4 SO4 . T 3 SO4 E 1 2004 8 SO4 SO4 . U 4 MG E 1 2005 3 MG MG . V 2 ADP F 1 2001 2001 ADP ADP . W 3 SO4 F 1 2002 6 SO4 SO4 . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id U _atom_site.label_entity_id 4 _atom_site.Cartn_x 18.234 _atom_site.Cartn_y -20.818 _atom_site.Cartn_z 40.296 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 88.62 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 2005 _atom_site.auth_asym_id E _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 51 _model_server_stats.query_time_ms 364 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #