data_8ASE # _model_server_result.job_id NAzj8xoT3R2jtJXBNtxB-g _model_server_result.datetime_utc '2024-11-29 14:14:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ase # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 8ASE # _exptl.entry_id 8ASE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 586.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (8~{S},14~{S},18~{E})-8-[(4-chlorophenyl)methyl]-3,21-dithia-7,10,16-triazatricyclo[21.2.2.1^{10,14}]octacosa-1(26),18,23(27),24-tetraene-6,9,15-trione _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ASE _cell.length_a 44.201 _cell.length_b 120.311 _cell.length_c 128.808 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ASE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,K,L 1 1 C,D,H,I,J,M,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n E NAG 1 C 1 NAG H 303 NAG 3 n E NAG 2 C 2 NAG H 304 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? disulf ? disulf5 C SG CYS 9 A CYS 1 1_555 D SG CYS 119 B CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? disulf ? disulf6 D SG CYS 28 B CYS 42 1_555 D SG CYS 44 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf7 D SG CYS 173 B CYS 168 1_555 D SG CYS 187 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? disulf ? disulf8 D SG CYS 201 B CYS 191 1_555 D SG CYS 231 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? covale ? covale1 B ND2 ASN 53 H ASN 60 1_555 E C1 NAG . C NAG 1 1_555 G ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 D ND2 ASN 53 B ASN 60 1_555 J C1 NAG . B NAG 303 1_555 G ? ? ? ? ? ? ? ? ? ? ? 1.468 ? covale ? covale3 E O4 NAG . C NAG 1 1_555 E C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? # _chem_comp.formula 'C30 H36 Cl N3 O3 S2' _chem_comp.formula_weight 586.208 _chem_comp.id NWR _chem_comp.mon_nstd_flag . _chem_comp.name (8~{S},14~{S},18~{E})-8-[(4-chlorophenyl)methyl]-3,21-dithia-7,10,16-triazatricyclo[21.2.2.1^{10,14}]octacosa-1(26),18,23(27),24-tetraene-6,9,15-trione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL1 C16 NWR sing 267 n n C16 C17 NWR doub 268 n y C16 C15 NWR sing 269 n y C17 C18 NWR sing 270 n y C15 C14 NWR doub 271 n y C18 C13 NWR doub 272 n y C14 C13 NWR sing 273 n y C13 C12 NWR sing 274 n n C12 C11 NWR sing 275 n n C11 N3 NWR sing 276 n n C11 C10 NWR sing 277 n n N3 C19 NWR sing 278 n n O2 C10 NWR doub 279 n n C10 N2 NWR sing 280 n n C19 C20 NWR sing 281 n n C19 O3 NWR doub 282 n n C20 C21 NWR sing 283 n n N2 C9 NWR sing 284 n n N2 C28 NWR sing 285 n n C21 S2 NWR sing 286 n n C9 C8 NWR sing 287 n n C28 C29 NWR sing 288 n n N1 C6 NWR sing 289 n n N1 C7 NWR sing 290 n n C8 C7 NWR sing 291 n n C8 C30 NWR sing 292 n n S2 C22 NWR sing 293 n n C6 C5 NWR sing 294 n n C5 C4 NWR doub 295 e n C7 O1 NWR doub 296 n n C30 C29 NWR sing 297 n n C4 C3 NWR sing 298 n n C3 S1 NWR sing 299 n n C22 C23 NWR sing 300 n n C26 C23 NWR doub 301 n y C26 C27 NWR sing 302 n y C23 C24 NWR sing 303 n y C27 C1 NWR doub 304 n y C24 C25 NWR doub 305 n y S1 C2 NWR sing 306 n n C1 C25 NWR sing 307 n y C1 C2 NWR sing 308 n n C2 H1 NWR sing 309 n n C2 H2 NWR sing 310 n n C3 H3 NWR sing 311 n n C3 H4 NWR sing 312 n n C4 H5 NWR sing 313 n n C5 H6 NWR sing 314 n n C6 H7 NWR sing 315 n n C6 H8 NWR sing 316 n n C8 H9 NWR sing 317 n n C9 H10 NWR sing 318 n n C9 H11 NWR sing 319 n n C11 H12 NWR sing 320 n n C12 H13 NWR sing 321 n n C12 H14 NWR sing 322 n n C14 H15 NWR sing 323 n n N1 H16 NWR sing 324 n n C15 H17 NWR sing 325 n n C17 H18 NWR sing 326 n n C18 H19 NWR sing 327 n n C20 H20 NWR sing 328 n n C20 H21 NWR sing 329 n n C21 H22 NWR sing 330 n n C21 H23 NWR sing 331 n n C22 H24 NWR sing 332 n n C22 H25 NWR sing 333 n n C24 H26 NWR sing 334 n n C25 H27 NWR sing 335 n n C26 H28 NWR sing 336 n n C27 H29 NWR sing 337 n n C28 H30 NWR sing 338 n n C28 H31 NWR sing 339 n n N3 H32 NWR sing 340 n n C29 H33 NWR sing 341 n n C29 H34 NWR sing 342 n n C30 H35 NWR sing 343 n n C30 H36 NWR sing 344 n n # _atom_sites.entry_id 8ASE _atom_sites.fract_transf_matrix[1][1] 0.022624 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008312 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007763 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 NWR H 1 301 301 NWR 195 . G 5 SO4 H 1 302 302 SO4 SO4 . H 4 NWR B 1 301 301 NWR 195 . I 5 SO4 B 1 302 303 SO4 SO4 . J 6 NAG B 1 303 304 NAG NAG . K 7 HOH L 1 101 15 HOH HOH . K 7 HOH L 2 102 29 HOH HOH . K 7 HOH L 3 103 48 HOH HOH . L 7 HOH H 1 401 73 HOH HOH . L 7 HOH H 2 402 51 HOH HOH . L 7 HOH H 3 403 59 HOH HOH . L 7 HOH H 4 404 42 HOH HOH . L 7 HOH H 5 405 34 HOH HOH . L 7 HOH H 6 406 54 HOH HOH . L 7 HOH H 7 407 43 HOH HOH . L 7 HOH H 8 408 5 HOH HOH . L 7 HOH H 9 409 24 HOH HOH . L 7 HOH H 10 410 79 HOH HOH . L 7 HOH H 11 411 37 HOH HOH . L 7 HOH H 12 412 1 HOH HOH . L 7 HOH H 13 413 78 HOH HOH . L 7 HOH H 14 414 10 HOH HOH . L 7 HOH H 15 415 35 HOH HOH . L 7 HOH H 16 416 65 HOH HOH . L 7 HOH H 17 417 82 HOH HOH . L 7 HOH H 18 418 18 HOH HOH . L 7 HOH H 19 419 69 HOH HOH . L 7 HOH H 20 420 83 HOH HOH . L 7 HOH H 21 421 41 HOH HOH . L 7 HOH H 22 422 27 HOH HOH . L 7 HOH H 23 423 39 HOH HOH . L 7 HOH H 24 424 55 HOH HOH . L 7 HOH H 25 425 84 HOH HOH . L 7 HOH H 26 426 60 HOH HOH . L 7 HOH H 27 427 77 HOH HOH . L 7 HOH H 28 428 52 HOH HOH . L 7 HOH H 29 429 81 HOH HOH . L 7 HOH H 30 430 36 HOH HOH . L 7 HOH H 31 431 74 HOH HOH . L 7 HOH H 32 432 66 HOH HOH . L 7 HOH H 33 433 76 HOH HOH . L 7 HOH H 34 434 64 HOH HOH . L 7 HOH H 35 435 28 HOH HOH . L 7 HOH H 36 436 63 HOH HOH . L 7 HOH H 37 437 32 HOH HOH . L 7 HOH H 38 438 19 HOH HOH . L 7 HOH H 39 439 80 HOH HOH . L 7 HOH H 40 440 33 HOH HOH . L 7 HOH H 41 441 75 HOH HOH . M 7 HOH A 1 101 71 HOH HOH . M 7 HOH A 2 102 6 HOH HOH . M 7 HOH A 3 103 67 HOH HOH . M 7 HOH A 4 104 14 HOH HOH . N 7 HOH B 1 401 3 HOH HOH . N 7 HOH B 2 402 12 HOH HOH . N 7 HOH B 3 403 44 HOH HOH . N 7 HOH B 4 404 4 HOH HOH . N 7 HOH B 5 405 2 HOH HOH . N 7 HOH B 6 406 20 HOH HOH . N 7 HOH B 7 407 9 HOH HOH . N 7 HOH B 8 408 26 HOH HOH . N 7 HOH B 9 409 8 HOH HOH . N 7 HOH B 10 410 89 HOH HOH . N 7 HOH B 11 411 13 HOH HOH . N 7 HOH B 12 412 56 HOH HOH . N 7 HOH B 13 413 25 HOH HOH . N 7 HOH B 14 414 87 HOH HOH . N 7 HOH B 15 415 40 HOH HOH . N 7 HOH B 16 416 68 HOH HOH . N 7 HOH B 17 417 88 HOH HOH . N 7 HOH B 18 418 47 HOH HOH . N 7 HOH B 19 419 16 HOH HOH . N 7 HOH B 20 420 38 HOH HOH . N 7 HOH B 21 421 85 HOH HOH . N 7 HOH B 22 422 21 HOH HOH . N 7 HOH B 23 423 86 HOH HOH . N 7 HOH B 24 424 23 HOH HOH . N 7 HOH B 25 425 50 HOH HOH . N 7 HOH B 26 426 57 HOH HOH . N 7 HOH B 27 427 62 HOH HOH . N 7 HOH B 28 428 53 HOH HOH . N 7 HOH B 29 429 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NWR . . . F 4 -5.179 -12.486 -14.893 1 40.24 ? C1 NWR 301 H 1 HETATM 2 C C2 NWR . . . F 4 -6.553 -13.031 -15.265 1 42.84 ? C2 NWR 301 H 1 HETATM 3 C C3 NWR . . . F 4 -7.861 -10.542 -14.185 1 53.9 ? C3 NWR 301 H 1 HETATM 4 C C4 NWR . . . F 4 -7.552 -10.026 -15.581 1 58.06 ? C4 NWR 301 H 1 HETATM 5 C C5 NWR . . . F 4 -6.392 -9.479 -15.852 1 53.84 ? C5 NWR 301 H 1 HETATM 6 C C6 NWR . . . F 4 -6.166 -8.99 -17.272 1 51.54 ? C6 NWR 301 H 1 HETATM 7 O O1 NWR . . . F 4 -4.317 -10.394 -18.685 1 39.66 ? O1 NWR 301 H 1 HETATM 8 C C7 NWR . . . F 4 -3.922 -9.374 -18.25 1 39.67 ? C7 NWR 301 H 1 HETATM 9 C C8 NWR . . . F 4 -2.493 -8.938 -18.529 1 37.2 ? C8 NWR 301 H 1 HETATM 10 C C9 NWR . . . F 4 -2.236 -7.626 -19.211 1 36.71 ? C9 NWR 301 H 1 HETATM 11 C C10 NWR . . . F 4 -0.545 -6.069 -18.192 1 41.25 ? C10 NWR 301 H 1 HETATM 12 C C11 NWR . . . F 4 -1.559 -5.161 -17.507 1 39.23 ? C11 NWR 301 H 1 HETATM 13 C C12 NWR . . . F 4 -0.979 -4.013 -16.697 1 36.17 ? C12 NWR 301 H 1 HETATM 14 C C13 NWR . . . F 4 -2.12 -3.182 -16.139 1 32.6 ? C13 NWR 301 H 1 HETATM 15 O O2 NWR . . . F 4 0.595 -5.814 -18.08 1 47.55 ? O2 NWR 301 H 1 HETATM 16 O O3 NWR . . . F 4 -3.853 -6.986 -15.396 1 45.4 ? O3 NWR 301 H 1 HETATM 17 C C14 NWR . . . F 4 -2.933 -2.467 -16.987 1 31.63 ? C14 NWR 301 H 1 HETATM 18 N N1 NWR . . . F 4 -4.81 -8.54 -17.48 1 46.28 ? N1 NWR 301 H 1 HETATM 19 C C15 NWR . . . F 4 -3.969 -1.72 -16.469 1 34.76 ? C15 NWR 301 H 1 HETATM 20 C C16 NWR . . . F 4 -4.191 -1.689 -15.105 1 36.51 ? C16 NWR 301 H 1 HETATM 21 C C17 NWR . . . F 4 -3.373 -2.41 -14.263 1 34.61 ? C17 NWR 301 H 1 HETATM 22 C C18 NWR . . . F 4 -2.337 -3.155 -14.779 1 32.7 ? C18 NWR 301 H 1 HETATM 23 C C19 NWR . . . F 4 -2.815 -6.52 -15.656 1 40.32 ? C19 NWR 301 H 1 HETATM 24 C C20 NWR . . . F 4 -1.697 -6.706 -14.651 1 42.57 ? C20 NWR 301 H 1 HETATM 25 C C21 NWR . . . F 4 -1.955 -8.008 -13.89 1 44.2 ? C21 NWR 301 H 1 HETATM 26 N N2 NWR . . . F 4 -0.912 -7.218 -19 1 38.55 ? N2 NWR 301 H 1 HETATM 27 C C22 NWR . . . F 4 -1.329 -10.942 -13.846 1 43.78 ? C22 NWR 301 H 1 HETATM 28 C C23 NWR . . . F 4 -2.694 -11.497 -14.227 1 43.54 ? C23 NWR 301 H 1 HETATM 29 C C24 NWR . . . F 4 -3.681 -11.583 -13.27 1 38.7 ? C24 NWR 301 H 1 HETATM 30 C C25 NWR . . . F 4 -4.921 -12.08 -13.604 1 36.95 ? C25 NWR 301 H 1 HETATM 31 C C26 NWR . . . F 4 -2.945 -11.905 -15.522 1 41.16 ? C26 NWR 301 H 1 HETATM 32 C C27 NWR . . . F 4 -4.191 -12.4 -15.854 1 40.96 ? C27 NWR 301 H 1 HETATM 33 C C28 NWR . . . F 4 0.112 -8.009 -19.597 1 36.39 ? C28 NWR 301 H 1 HETATM 34 N N3 NWR . . . F 4 -2.71 -5.821 -16.918 1 45.26 ? N3 NWR 301 H 1 HETATM 35 S S1 NWR . . . F 4 -7.865 -12.355 -14.205 1 57.58 ? S1 NWR 301 H 1 HETATM 36 CL CL1 NWR . . . F 4 -5.525 -0.727 -14.424 1 36.25 ? CL1 NWR 301 H 1 HETATM 37 S S2 NWR . . . F 4 -1.085 -9.371 -14.714 1 42.59 ? S2 NWR 301 H 1 HETATM 38 C C29 NWR . . . F 4 0.024 -9.4 -18.936 1 39.95 ? C29 NWR 301 H 1 HETATM 39 C C30 NWR . . . F 4 -1.44 -9.949 -18.997 1 34.45 ? C30 NWR 301 H 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 54 _model_server_stats.query_time_ms 1142 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 39 #