data_8ASE
#
_model_server_result.job_id            DRnHG7HGpOPv8RXLCAHlgA 
_model_server_result.datetime_utc      '2024-11-26 02:38:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ase 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":303}' 
#
_entry.id    8ASE 
#
_exptl.entry_id    8ASE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          6 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8ASE 
_cell.length_a            44.201 
_cell.length_b            120.311 
_cell.length_c            128.808 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8ASE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,K,L 1 1 
C,D,H,I,J,M,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             J 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_pdbx_entity_branch.entity_id    3 
_pdbx_entity_branch.type         oligosaccharide 
#
_pdbx_entity_branch_link.link_id                     1 
_pdbx_entity_branch_link.details                     ? 
_pdbx_entity_branch_link.entity_id                   3 
_pdbx_entity_branch_link.entity_branch_list_num_1    2 
_pdbx_entity_branch_link.entity_branch_list_num_2    1 
_pdbx_entity_branch_link.comp_id_1                   NAG 
_pdbx_entity_branch_link.comp_id_2                   NAG 
_pdbx_entity_branch_link.atom_id_1                   C1 
_pdbx_entity_branch_link.leaving_atom_id_1           O1 
_pdbx_entity_branch_link.atom_stereo_config_1        . 
_pdbx_entity_branch_link.atom_id_2                   O4 
_pdbx_entity_branch_link.leaving_atom_id_2           HO4 
_pdbx_entity_branch_link.atom_stereo_config_2        . 
_pdbx_entity_branch_link.value_order                 sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
3 n E NAG 1 C 1 NAG H 303 NAG 
3 n E NAG 2 C 2 NAG H 304 NAG 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
disulf ? disulf5 C SG CYS 9 A CYS 1 1_555 D SG CYS 119 B CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
disulf ? disulf6 D SG CYS 28 B CYS 42 1_555 D SG CYS 44 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
disulf ? disulf7 D SG CYS 173 B CYS 168 1_555 D SG CYS 187 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
disulf ? disulf8 D SG CYS 201 B CYS 191 1_555 D SG CYS 231 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
covale ? covale1 B ND2 ASN 53 H ASN 60 1_555 E C1 NAG . C NAG 1 1_555 G ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale2 D ND2 ASN 53 B ASN 60 1_555 J C1 NAG . B NAG 303 1_555 G ? ? ? ? ? ? ? ? ? ? ? 1.468 ? 
covale ? covale3 E O4 NAG . C NAG 1 1_555 E C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     8ASE 
_atom_sites.fract_transf_matrix[1][1]    0.022624 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008312 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007763 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 4 NWR H 1 301 301 NWR 195 . 
G 5 SO4 H 1 302 302 SO4 SO4 . 
H 4 NWR B 1 301 301 NWR 195 . 
I 5 SO4 B 1 302 303 SO4 SO4 . 
J 6 NAG B 1 303 304 NAG NAG . 
K 7 HOH L 1 101 15 HOH HOH . 
K 7 HOH L 2 102 29 HOH HOH . 
K 7 HOH L 3 103 48 HOH HOH . 
L 7 HOH H 1 401 73 HOH HOH . 
L 7 HOH H 2 402 51 HOH HOH . 
L 7 HOH H 3 403 59 HOH HOH . 
L 7 HOH H 4 404 42 HOH HOH . 
L 7 HOH H 5 405 34 HOH HOH . 
L 7 HOH H 6 406 54 HOH HOH . 
L 7 HOH H 7 407 43 HOH HOH . 
L 7 HOH H 8 408 5 HOH HOH . 
L 7 HOH H 9 409 24 HOH HOH . 
L 7 HOH H 10 410 79 HOH HOH . 
L 7 HOH H 11 411 37 HOH HOH . 
L 7 HOH H 12 412 1 HOH HOH . 
L 7 HOH H 13 413 78 HOH HOH . 
L 7 HOH H 14 414 10 HOH HOH . 
L 7 HOH H 15 415 35 HOH HOH . 
L 7 HOH H 16 416 65 HOH HOH . 
L 7 HOH H 17 417 82 HOH HOH . 
L 7 HOH H 18 418 18 HOH HOH . 
L 7 HOH H 19 419 69 HOH HOH . 
L 7 HOH H 20 420 83 HOH HOH . 
L 7 HOH H 21 421 41 HOH HOH . 
L 7 HOH H 22 422 27 HOH HOH . 
L 7 HOH H 23 423 39 HOH HOH . 
L 7 HOH H 24 424 55 HOH HOH . 
L 7 HOH H 25 425 84 HOH HOH . 
L 7 HOH H 26 426 60 HOH HOH . 
L 7 HOH H 27 427 77 HOH HOH . 
L 7 HOH H 28 428 52 HOH HOH . 
L 7 HOH H 29 429 81 HOH HOH . 
L 7 HOH H 30 430 36 HOH HOH . 
L 7 HOH H 31 431 74 HOH HOH . 
L 7 HOH H 32 432 66 HOH HOH . 
L 7 HOH H 33 433 76 HOH HOH . 
L 7 HOH H 34 434 64 HOH HOH . 
L 7 HOH H 35 435 28 HOH HOH . 
L 7 HOH H 36 436 63 HOH HOH . 
L 7 HOH H 37 437 32 HOH HOH . 
L 7 HOH H 38 438 19 HOH HOH . 
L 7 HOH H 39 439 80 HOH HOH . 
L 7 HOH H 40 440 33 HOH HOH . 
L 7 HOH H 41 441 75 HOH HOH . 
M 7 HOH A 1 101 71 HOH HOH . 
M 7 HOH A 2 102 6 HOH HOH . 
M 7 HOH A 3 103 67 HOH HOH . 
M 7 HOH A 4 104 14 HOH HOH . 
N 7 HOH B 1 401 3 HOH HOH . 
N 7 HOH B 2 402 12 HOH HOH . 
N 7 HOH B 3 403 44 HOH HOH . 
N 7 HOH B 4 404 4 HOH HOH . 
N 7 HOH B 5 405 2 HOH HOH . 
N 7 HOH B 6 406 20 HOH HOH . 
N 7 HOH B 7 407 9 HOH HOH . 
N 7 HOH B 8 408 26 HOH HOH . 
N 7 HOH B 9 409 8 HOH HOH . 
N 7 HOH B 10 410 89 HOH HOH . 
N 7 HOH B 11 411 13 HOH HOH . 
N 7 HOH B 12 412 56 HOH HOH . 
N 7 HOH B 13 413 25 HOH HOH . 
N 7 HOH B 14 414 87 HOH HOH . 
N 7 HOH B 15 415 40 HOH HOH . 
N 7 HOH B 16 416 68 HOH HOH . 
N 7 HOH B 17 417 88 HOH HOH . 
N 7 HOH B 18 418 47 HOH HOH . 
N 7 HOH B 19 419 16 HOH HOH . 
N 7 HOH B 20 420 38 HOH HOH . 
N 7 HOH B 21 421 85 HOH HOH . 
N 7 HOH B 22 422 21 HOH HOH . 
N 7 HOH B 23 423 86 HOH HOH . 
N 7 HOH B 24 424 23 HOH HOH . 
N 7 HOH B 25 425 50 HOH HOH . 
N 7 HOH B 26 426 57 HOH HOH . 
N 7 HOH B 27 427 62 HOH HOH . 
N 7 HOH B 28 428 53 HOH HOH . 
N 7 HOH B 29 429 45 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . J 6 -13.656 -32.407 -16.397 1 68.26 ? C1 NAG 303 B 1 
HETATM 2 C C2 NAG . . . J 6 -12.551 -32.5 -15.324 1 69.63 ? C2 NAG 303 B 1 
HETATM 3 C C3 NAG . . . J 6 -12.181 -33.932 -14.902 1 76.47 ? C3 NAG 303 B 1 
HETATM 4 C C4 NAG . . . J 6 -13.444 -34.677 -14.465 1 83.48 ? C4 NAG 303 B 1 
HETATM 5 C C5 NAG . . . J 6 -14.429 -34.714 -15.641 1 82.27 ? C5 NAG 303 B 1 
HETATM 6 C C6 NAG . . . J 6 -15.717 -35.375 -15.137 1 84.42 ? C6 NAG 303 B 1 
HETATM 7 C C7 NAG . . . J 6 -10.981 -30.675 -15.039 1 70.98 ? C7 NAG 303 B 1 
HETATM 8 C C8 NAG . . . J 6 -9.503 -30.327 -15.166 1 71.92 ? C8 NAG 303 B 1 
HETATM 9 N N2 NAG . . . J 6 -11.341 -31.791 -15.691 1 65.34 ? N2 NAG 303 B 1 
HETATM 10 O O3 NAG . . . J 6 -11.217 -33.895 -13.831 1 70.69 ? O3 NAG 303 B 1 
HETATM 11 O O4 NAG . . . J 6 -13.159 -36.005 -13.963 1 86.96 ? O4 NAG 303 B 1 
HETATM 12 O O5 NAG . . . J 6 -14.709 -33.39 -16.183 1 78.07 ? O5 NAG 303 B 1 
HETATM 13 O O6 NAG . . . J 6 -16.821 -35.067 -15.992 1 75.46 ? O6 NAG 303 B 1 
HETATM 14 O O7 NAG . . . J 6 -11.791 -29.985 -14.4 1 68.04 ? O7 NAG 303 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#