data_8ASE # _model_server_result.job_id Gi7BtHlTgyMsAqd978LloA _model_server_result.datetime_utc '2024-11-07 05:40:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ase # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":303}' # _entry.id 8ASE # _exptl.entry_id 8ASE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 6 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ASE _cell.length_a 44.201 _cell.length_b 120.311 _cell.length_c 128.808 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ASE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,K,L 1 1 C,D,H,I,J,M,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n E NAG 1 C 1 NAG H 303 NAG 3 n E NAG 2 C 2 NAG H 304 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? disulf ? disulf5 C SG CYS 9 A CYS 1 1_555 D SG CYS 119 B CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? disulf ? disulf6 D SG CYS 28 B CYS 42 1_555 D SG CYS 44 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf7 D SG CYS 173 B CYS 168 1_555 D SG CYS 187 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? disulf ? disulf8 D SG CYS 201 B CYS 191 1_555 D SG CYS 231 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? covale ? covale1 B ND2 ASN 53 H ASN 60 1_555 E C1 NAG . C NAG 1 1_555 G ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 D ND2 ASN 53 B ASN 60 1_555 J C1 NAG . B NAG 303 1_555 G ? ? ? ? ? ? ? ? ? ? ? 1.468 ? covale ? covale3 E O4 NAG . C NAG 1 1_555 E C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8ASE _atom_sites.fract_transf_matrix[1][1] 0.022624 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008312 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007763 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 NWR H 1 301 301 NWR 195 . G 5 SO4 H 1 302 302 SO4 SO4 . H 4 NWR B 1 301 301 NWR 195 . I 5 SO4 B 1 302 303 SO4 SO4 . J 6 NAG B 1 303 304 NAG NAG . K 7 HOH L 1 101 15 HOH HOH . K 7 HOH L 2 102 29 HOH HOH . K 7 HOH L 3 103 48 HOH HOH . L 7 HOH H 1 401 73 HOH HOH . L 7 HOH H 2 402 51 HOH HOH . L 7 HOH H 3 403 59 HOH HOH . L 7 HOH H 4 404 42 HOH HOH . L 7 HOH H 5 405 34 HOH HOH . L 7 HOH H 6 406 54 HOH HOH . L 7 HOH H 7 407 43 HOH HOH . L 7 HOH H 8 408 5 HOH HOH . L 7 HOH H 9 409 24 HOH HOH . L 7 HOH H 10 410 79 HOH HOH . L 7 HOH H 11 411 37 HOH HOH . L 7 HOH H 12 412 1 HOH HOH . L 7 HOH H 13 413 78 HOH HOH . L 7 HOH H 14 414 10 HOH HOH . L 7 HOH H 15 415 35 HOH HOH . L 7 HOH H 16 416 65 HOH HOH . L 7 HOH H 17 417 82 HOH HOH . L 7 HOH H 18 418 18 HOH HOH . L 7 HOH H 19 419 69 HOH HOH . L 7 HOH H 20 420 83 HOH HOH . L 7 HOH H 21 421 41 HOH HOH . L 7 HOH H 22 422 27 HOH HOH . L 7 HOH H 23 423 39 HOH HOH . L 7 HOH H 24 424 55 HOH HOH . L 7 HOH H 25 425 84 HOH HOH . L 7 HOH H 26 426 60 HOH HOH . L 7 HOH H 27 427 77 HOH HOH . L 7 HOH H 28 428 52 HOH HOH . L 7 HOH H 29 429 81 HOH HOH . L 7 HOH H 30 430 36 HOH HOH . L 7 HOH H 31 431 74 HOH HOH . L 7 HOH H 32 432 66 HOH HOH . L 7 HOH H 33 433 76 HOH HOH . L 7 HOH H 34 434 64 HOH HOH . L 7 HOH H 35 435 28 HOH HOH . L 7 HOH H 36 436 63 HOH HOH . L 7 HOH H 37 437 32 HOH HOH . L 7 HOH H 38 438 19 HOH HOH . L 7 HOH H 39 439 80 HOH HOH . L 7 HOH H 40 440 33 HOH HOH . L 7 HOH H 41 441 75 HOH HOH . M 7 HOH A 1 101 71 HOH HOH . M 7 HOH A 2 102 6 HOH HOH . M 7 HOH A 3 103 67 HOH HOH . M 7 HOH A 4 104 14 HOH HOH . N 7 HOH B 1 401 3 HOH HOH . N 7 HOH B 2 402 12 HOH HOH . N 7 HOH B 3 403 44 HOH HOH . N 7 HOH B 4 404 4 HOH HOH . N 7 HOH B 5 405 2 HOH HOH . N 7 HOH B 6 406 20 HOH HOH . N 7 HOH B 7 407 9 HOH HOH . N 7 HOH B 8 408 26 HOH HOH . N 7 HOH B 9 409 8 HOH HOH . N 7 HOH B 10 410 89 HOH HOH . N 7 HOH B 11 411 13 HOH HOH . N 7 HOH B 12 412 56 HOH HOH . N 7 HOH B 13 413 25 HOH HOH . N 7 HOH B 14 414 87 HOH HOH . N 7 HOH B 15 415 40 HOH HOH . N 7 HOH B 16 416 68 HOH HOH . N 7 HOH B 17 417 88 HOH HOH . N 7 HOH B 18 418 47 HOH HOH . N 7 HOH B 19 419 16 HOH HOH . N 7 HOH B 20 420 38 HOH HOH . N 7 HOH B 21 421 85 HOH HOH . N 7 HOH B 22 422 21 HOH HOH . N 7 HOH B 23 423 86 HOH HOH . N 7 HOH B 24 424 23 HOH HOH . N 7 HOH B 25 425 50 HOH HOH . N 7 HOH B 26 426 57 HOH HOH . N 7 HOH B 27 427 62 HOH HOH . N 7 HOH B 28 428 53 HOH HOH . N 7 HOH B 29 429 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . J 6 -13.656 -32.407 -16.397 1 68.26 ? C1 NAG 303 B 1 HETATM 2 C C2 NAG . . . J 6 -12.551 -32.5 -15.324 1 69.63 ? C2 NAG 303 B 1 HETATM 3 C C3 NAG . . . J 6 -12.181 -33.932 -14.902 1 76.47 ? C3 NAG 303 B 1 HETATM 4 C C4 NAG . . . J 6 -13.444 -34.677 -14.465 1 83.48 ? C4 NAG 303 B 1 HETATM 5 C C5 NAG . . . J 6 -14.429 -34.714 -15.641 1 82.27 ? C5 NAG 303 B 1 HETATM 6 C C6 NAG . . . J 6 -15.717 -35.375 -15.137 1 84.42 ? C6 NAG 303 B 1 HETATM 7 C C7 NAG . . . J 6 -10.981 -30.675 -15.039 1 70.98 ? C7 NAG 303 B 1 HETATM 8 C C8 NAG . . . J 6 -9.503 -30.327 -15.166 1 71.92 ? C8 NAG 303 B 1 HETATM 9 N N2 NAG . . . J 6 -11.341 -31.791 -15.691 1 65.34 ? N2 NAG 303 B 1 HETATM 10 O O3 NAG . . . J 6 -11.217 -33.895 -13.831 1 70.69 ? O3 NAG 303 B 1 HETATM 11 O O4 NAG . . . J 6 -13.159 -36.005 -13.963 1 86.96 ? O4 NAG 303 B 1 HETATM 12 O O5 NAG . . . J 6 -14.709 -33.39 -16.183 1 78.07 ? O5 NAG 303 B 1 HETATM 13 O O6 NAG . . . J 6 -16.821 -35.067 -15.992 1 75.46 ? O6 NAG 303 B 1 HETATM 14 O O7 NAG . . . J 6 -11.791 -29.985 -14.4 1 68.04 ? O7 NAG 303 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 50 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 221 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 14 #