data_8ASI # _model_server_result.job_id B9hOO8dAc4eH_cPjcT2Amw _model_server_result.datetime_utc '2025-03-06 09:02:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8asi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":502}' # _entry.id 8ASI # _exptl.entry_id 8ASI _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 616.487 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ASI _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ASI _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 L N N ? 7 M N N ? 7 V N N ? 7 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 134 A CYS 134 1_555 A SG CYS 151 A CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf2 E SG CYS 134 E CYS 134 1_555 E SG CYS 151 E CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 C SG CYS 58 C CYS 58 1_555 S C3B HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.739 ? covale ? covale2 C SG CYS 61 C CYS 61 1_555 S CAC HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.836 ? covale ? covale3 G SG CYS 58 G CYS 58 1_555 CA CAB HEC . G HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.782 ? metalc ? metalc1 A SG CYS 129 A CYS 129 1_555 I FE1 FES . A FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc2 A ND1 HIS 131 A HIS 131 1_555 I FE2 FES . A FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc3 A SG CYS 149 A CYS 149 1_555 I FE1 FES . A FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc4 A ND1 HIS 152 A HIS 152 1_555 I FE2 FES . A FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.912 ? metalc ? metalc5 B NE2 HIS 97 B HIS 97 1_555 M FE HEM . B HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? metalc ? metalc6 B NE2 HIS 111 B HIS 111 1_555 L FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc7 B NE2 HIS 198 B HIS 198 1_555 M FE HEM . B HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc8 B NE2 HIS 212 B HIS 212 1_555 L FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc9 C NE2 HIS 62 C HIS 62 1_555 S FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc10 E SG CYS 129 E CYS 129 1_555 T FE1 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc11 E ND1 HIS 131 E HIS 131 1_555 T FE2 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc12 E SG CYS 149 E CYS 149 1_555 T FE1 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc13 E ND1 HIS 152 E HIS 152 1_555 T FE2 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc14 F NE2 HIS 97 F HIS 97 1_555 W FE HEM . F HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? metalc ? metalc15 F NE2 HIS 111 F HIS 111 1_555 V FE HEM . F HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc16 F NE2 HIS 198 F HIS 198 1_555 W FE HEM . F HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc17 F NE2 HIS 212 F HIS 212 1_555 V FE HEM . F HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc18 G NE2 HIS 62 G HIS 62 1_555 CA FE HEC . G HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # _atom_sites.entry_id 8ASI _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 FES A 1 201 200 FES FES . J 6 PEE A 1 202 6 PEE PEE . K 6 PEE A 1 203 3 PEE PEE . L 7 HEM B 1 501 501 HEM HEM . M 7 HEM B 1 502 502 HEM HEM . N 6 PEE B 1 503 1 PEE PEE . O 6 PEE B 1 504 3 PEE PEE . P 6 PEE B 1 505 7 PEE PEE . Q 6 PEE B 1 506 9 PEE PEE . R 6 PEE B 1 507 2 PEE PEE . S 8 HEC C 1 301 323 HEC HEC . T 5 FES E 1 201 200 FES FES . U 6 PEE E 1 202 10 PEE PEE . V 7 HEM F 1 501 501 HEM HEM . W 7 HEM F 1 502 502 HEM HEM . X 9 U10 F 1 503 13 U10 U10 . Y 6 PEE F 1 504 2 PEE PEE . Z 6 PEE F 1 505 5 PEE PEE . AA 6 PEE F 1 506 12 PEE PEE . BA 6 PEE F 1 507 1 PEE PEE . CA 8 HEC G 1 301 323 HEC HEC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . W 7 127.077 140.87 134.46 1 53.46 ? CHA HEM 502 F 1 HETATM 2 C CHB HEM . . . W 7 128.175 142.181 129.898 1 53.46 ? CHB HEM 502 F 1 HETATM 3 C CHC HEM . . . W 7 130.746 138.111 129.334 1 53.46 ? CHC HEM 502 F 1 HETATM 4 C CHD HEM . . . W 7 129.2 136.602 133.677 1 53.46 ? CHD HEM 502 F 1 HETATM 5 C C1A HEM . . . W 7 127.208 141.6 133.297 1 53.46 ? C1A HEM 502 F 1 HETATM 6 C C2A HEM . . . W 7 126.765 142.961 133.1 1 53.46 ? C2A HEM 502 F 1 HETATM 7 C C3A HEM . . . W 7 127.064 143.326 131.853 1 53.46 ? C3A HEM 502 F 1 HETATM 8 C C4A HEM . . . W 7 127.712 142.208 131.198 1 53.46 ? C4A HEM 502 F 1 HETATM 9 C CMA HEM . . . W 7 126.769 144.701 131.221 1 53.46 ? CMA HEM 502 F 1 HETATM 10 C CAA HEM . . . W 7 126.074 143.829 134.169 1 53.46 ? CAA HEM 502 F 1 HETATM 11 C CBA HEM . . . W 7 127.133 144.252 135.18 1 53.46 ? CBA HEM 502 F 1 HETATM 12 C CGA HEM . . . W 7 126.551 145.244 136.145 1 53.46 ? CGA HEM 502 F 1 HETATM 13 O O1A HEM . . . W 7 126.544 144.952 137.367 1 53.46 ? O1A HEM 502 F 1 HETATM 14 O O2A HEM . . . W 7 126.098 146.326 135.693 1 53.46 ? O2A HEM 502 F 1 HETATM 15 C C1B HEM . . . W 7 128.982 141.211 129.342 1 53.46 ? C1B HEM 502 F 1 HETATM 16 C C2B HEM . . . W 7 129.574 141.23 128.018 1 53.46 ? C2B HEM 502 F 1 HETATM 17 C C3B HEM . . . W 7 130.289 140.105 127.866 1 53.46 ? C3B HEM 502 F 1 HETATM 18 C C4B HEM . . . W 7 130.164 139.334 129.084 1 53.46 ? C4B HEM 502 F 1 HETATM 19 C CMB HEM . . . W 7 129.402 142.372 126.992 1 53.46 ? CMB HEM 502 F 1 HETATM 20 C CAB HEM . . . W 7 131.108 139.65 126.635 1 53.46 ? CAB HEM 502 F 1 HETATM 21 C CBB HEM . . . W 7 130.603 139.677 125.397 1 53.46 ? CBB HEM 502 F 1 HETATM 22 C C1C HEM . . . W 7 130.447 137.303 130.407 1 53.46 ? C1C HEM 502 F 1 HETATM 23 C C2C HEM . . . W 7 130.67 135.875 130.505 1 53.46 ? C2C HEM 502 F 1 HETATM 24 C C3C HEM . . . W 7 130.246 135.474 131.703 1 53.46 ? C3C HEM 502 F 1 HETATM 25 C C4C HEM . . . W 7 129.724 136.621 132.406 1 53.46 ? C4C HEM 502 F 1 HETATM 26 C CMC HEM . . . W 7 131.303 134.973 129.426 1 53.46 ? CMC HEM 502 F 1 HETATM 27 C CAC HEM . . . W 7 130.263 134.035 132.26 1 53.46 ? CAC HEM 502 F 1 HETATM 28 C CBC HEM . . . W 7 131.366 133.288 132.253 1 53.46 ? CBC HEM 502 F 1 HETATM 29 C C1D HEM . . . W 7 128.474 137.606 134.268 1 53.46 ? C1D HEM 502 F 1 HETATM 30 C C2D HEM . . . W 7 127.786 137.527 135.536 1 53.46 ? C2D HEM 502 F 1 HETATM 31 C C3D HEM . . . W 7 127.195 138.702 135.763 1 53.46 ? C3D HEM 502 F 1 HETATM 32 C C4D HEM . . . W 7 127.489 139.57 134.638 1 53.46 ? C4D HEM 502 F 1 HETATM 33 C CMD HEM . . . W 7 127.748 136.286 136.455 1 53.46 ? CMD HEM 502 F 1 HETATM 34 C CAD HEM . . . W 7 126.339 139.053 137.002 1 53.46 ? CAD HEM 502 F 1 HETATM 35 C CBD HEM . . . W 7 127.168 139.376 138.24 1 53.46 ? CBD HEM 502 F 1 HETATM 36 C CGD HEM . . . W 7 127.777 140.743 138.1 1 53.46 ? CGD HEM 502 F 1 HETATM 37 O O1D HEM . . . W 7 129.028 140.848 138.105 1 53.46 ? O1D HEM 502 F 1 HETATM 38 O O2D HEM . . . W 7 127.006 141.73 137.994 1 53.46 ? O2D HEM 502 F 1 HETATM 39 N NA HEM . . . W 7 127.78 141.172 132.113 1 53.46 ? NA HEM 502 F 1 HETATM 40 N NB HEM . . . W 7 129.363 140.037 129.961 1 53.46 ? NB HEM 502 F 1 HETATM 41 N NC HEM . . . W 7 129.869 137.725 131.589 1 53.46 ? NC HEM 502 F 1 HETATM 42 N ND HEM . . . W 7 128.273 138.866 133.748 1 53.46 ? ND HEM 502 F 1 HETATM 43 FE FE HEM . . . W 7 128.833 139.457 131.871 1 53.46 ? FE HEM 502 F 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #