data_8ASI # _model_server_result.job_id lZMpZKd6dQAZHQk83f2ogg _model_server_result.datetime_utc '2025-03-06 09:20:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8asi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":503}' # _entry.id 8ASI # _exptl.entry_id 8ASI _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 863.343 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description UBIQUINONE-10 _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ASI _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ASI _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id X _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 134 A CYS 134 1_555 A SG CYS 151 A CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf2 E SG CYS 134 E CYS 134 1_555 E SG CYS 151 E CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 C SG CYS 58 C CYS 58 1_555 S C3B HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.739 ? covale ? covale2 C SG CYS 61 C CYS 61 1_555 S CAC HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.836 ? covale ? covale3 G SG CYS 58 G CYS 58 1_555 CA CAB HEC . G HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.782 ? metalc ? metalc1 A SG CYS 129 A CYS 129 1_555 I FE1 FES . A FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc2 A ND1 HIS 131 A HIS 131 1_555 I FE2 FES . A FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc3 A SG CYS 149 A CYS 149 1_555 I FE1 FES . A FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc4 A ND1 HIS 152 A HIS 152 1_555 I FE2 FES . A FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.912 ? metalc ? metalc5 B NE2 HIS 97 B HIS 97 1_555 M FE HEM . B HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? metalc ? metalc6 B NE2 HIS 111 B HIS 111 1_555 L FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc7 B NE2 HIS 198 B HIS 198 1_555 M FE HEM . B HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc8 B NE2 HIS 212 B HIS 212 1_555 L FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc9 C NE2 HIS 62 C HIS 62 1_555 S FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc10 E SG CYS 129 E CYS 129 1_555 T FE1 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc11 E ND1 HIS 131 E HIS 131 1_555 T FE2 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc12 E SG CYS 149 E CYS 149 1_555 T FE1 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc13 E ND1 HIS 152 E HIS 152 1_555 T FE2 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc14 F NE2 HIS 97 F HIS 97 1_555 W FE HEM . F HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? metalc ? metalc15 F NE2 HIS 111 F HIS 111 1_555 V FE HEM . F HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc16 F NE2 HIS 198 F HIS 198 1_555 W FE HEM . F HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc17 F NE2 HIS 212 F HIS 212 1_555 V FE HEM . F HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc18 G NE2 HIS 62 G HIS 62 1_555 CA FE HEC . G HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? # _chem_comp.formula 'C59 H90 O4' _chem_comp.formula_weight 863.343 _chem_comp.id U10 _chem_comp.mon_nstd_flag . _chem_comp.name UBIQUINONE-10 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Coenzyme Q10' # _atom_sites.entry_id 8ASI _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 FES A 1 201 200 FES FES . J 6 PEE A 1 202 6 PEE PEE . K 6 PEE A 1 203 3 PEE PEE . L 7 HEM B 1 501 501 HEM HEM . M 7 HEM B 1 502 502 HEM HEM . N 6 PEE B 1 503 1 PEE PEE . O 6 PEE B 1 504 3 PEE PEE . P 6 PEE B 1 505 7 PEE PEE . Q 6 PEE B 1 506 9 PEE PEE . R 6 PEE B 1 507 2 PEE PEE . S 8 HEC C 1 301 323 HEC HEC . T 5 FES E 1 201 200 FES FES . U 6 PEE E 1 202 10 PEE PEE . V 7 HEM F 1 501 501 HEM HEM . W 7 HEM F 1 502 502 HEM HEM . X 9 U10 F 1 503 13 U10 U10 . Y 6 PEE F 1 504 2 PEE PEE . Z 6 PEE F 1 505 5 PEE PEE . AA 6 PEE F 1 506 12 PEE PEE . BA 6 PEE F 1 507 1 PEE PEE . CA 8 HEC G 1 301 323 HEC HEC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 U10 . . . X 9 116.523 149.353 126.906 1 66.51 ? C1 U10 503 F 1 HETATM 2 C C2 U10 . . . X 9 116.061 149.348 128.211 1 66.51 ? C2 U10 503 F 1 HETATM 3 C C3 U10 . . . X 9 114.79 149.817 128.522 1 66.51 ? C3 U10 503 F 1 HETATM 4 C C4 U10 . . . X 9 113.966 150.286 127.484 1 66.51 ? C4 U10 503 F 1 HETATM 5 C C5 U10 . . . X 9 114.447 150.265 126.179 1 66.51 ? C5 U10 503 F 1 HETATM 6 C C6 U10 . . . X 9 115.713 149.799 125.859 1 66.51 ? C6 U10 503 F 1 HETATM 7 C C1M U10 . . . X 9 117.913 148.841 126.739 1 66.51 ? C1M U10 503 F 1 HETATM 8 C C3M U10 . . . X 9 114.831 150.11 130.81 1 66.51 ? C3M U10 503 F 1 HETATM 9 C C4M U10 . . . X 9 112.438 151.553 128.809 1 66.51 ? C4M U10 503 F 1 HETATM 10 C C7 U10 . . . X 9 116.074 149.842 124.378 1 66.51 ? C7 U10 503 F 1 HETATM 11 C C8 U10 . . . X 9 116.366 148.484 123.766 1 66.51 ? C8 U10 503 F 1 HETATM 12 C C9 U10 . . . X 9 117.7 147.943 123.455 1 66.51 ? C9 U10 503 F 1 HETATM 13 C C10 U10 . . . X 9 118.492 148.55 122.335 1 66.51 ? C10 U10 503 F 1 HETATM 14 C C11 U10 . . . X 9 118.246 146.778 124.25 1 66.51 ? C11 U10 503 F 1 HETATM 15 C C12 U10 . . . X 9 118.853 145.624 123.474 1 66.51 ? C12 U10 503 F 1 HETATM 16 C C13 U10 . . . X 9 117.821 144.525 123.444 1 66.51 ? C13 U10 503 F 1 HETATM 17 C C14 U10 . . . X 9 118.137 143.258 122.78 1 66.51 ? C14 U10 503 F 1 HETATM 18 C C15 U10 . . . X 9 119.564 142.936 122.468 1 66.51 ? C15 U10 503 F 1 HETATM 19 C C16 U10 . . . X 9 117.059 142.278 122.399 1 66.51 ? C16 U10 503 F 1 HETATM 20 C C17 U10 . . . X 9 116.679 141.464 123.629 1 66.51 ? C17 U10 503 F 1 HETATM 21 C C18 U10 . . . X 9 117.281 140.086 123.535 1 66.51 ? C18 U10 503 F 1 HETATM 22 C C19 U10 . . . X 9 116.803 138.998 124.394 1 66.51 ? C19 U10 503 F 1 HETATM 23 C C20 U10 . . . X 9 115.616 139.2 125.291 1 66.51 ? C20 U10 503 F 1 HETATM 24 C C21 U10 . . . X 9 117.515 137.67 124.358 1 66.51 ? C21 U10 503 F 1 HETATM 25 C C22 U10 . . . X 9 116.517 136.547 124.591 1 66.51 ? C22 U10 503 F 1 HETATM 26 C C23 U10 . . . X 9 117.132 135.264 124.091 1 66.51 ? C23 U10 503 F 1 HETATM 27 C C24 U10 . . . X 9 116.384 134.306 123.266 1 66.51 ? C24 U10 503 F 1 HETATM 28 C C25 U10 . . . X 9 115.782 134.73 121.959 1 66.51 ? C25 U10 503 F 1 HETATM 29 C C26 U10 . . . X 9 116.248 132.885 123.753 1 66.51 ? C26 U10 503 F 1 HETATM 30 C C27 U10 . . . X 9 117.342 132.01 123.155 1 66.51 ? C27 U10 503 F 1 HETATM 31 C C28 U10 . . . X 9 116.998 130.569 123.441 1 66.51 ? C28 U10 503 F 1 HETATM 32 C C29 U10 . . . X 9 116.812 129.584 122.369 1 66.51 ? C29 U10 503 F 1 HETATM 33 C C30 U10 . . . X 9 117.258 129.888 120.971 1 66.51 ? C30 U10 503 F 1 HETATM 34 C C31 U10 . . . X 9 116.173 128.257 122.694 1 66.51 ? C31 U10 503 F 1 HETATM 35 C C32 U10 . . . X 9 117.112 127.437 123.568 1 66.51 ? C32 U10 503 F 1 HETATM 36 C C33 U10 . . . X 9 117.38 126.116 122.891 1 66.51 ? C33 U10 503 F 1 HETATM 37 C C34 U10 . . . X 9 118.718 125.516 122.941 1 66.51 ? C34 U10 503 F 1 HETATM 38 C C35 U10 . . . X 9 119.653 125.904 124.043 1 66.51 ? C35 U10 503 F 1 HETATM 39 O O2 U10 . . . X 9 116.561 148.491 128.938 1 66.51 ? O2 U10 503 F 1 HETATM 40 O O3 U10 . . . X 9 114.355 149.486 129.631 1 66.51 ? O3 U10 503 F 1 HETATM 41 O O4 U10 . . . X 9 112.973 151.017 127.62 1 66.51 ? O4 U10 503 F 1 HETATM 42 O O5 U10 . . . X 9 113.665 150.515 125.263 1 66.51 ? O5 U10 503 F 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 42 #