data_8ASJ # _model_server_result.job_id JmX3KRI9TLez9WgKjk9kHA _model_server_result.datetime_utc '2025-03-06 09:41:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8asj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":502}' # _entry.id 8ASJ # _exptl.entry_id 8ASJ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 616.487 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ASJ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ASJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 K N N ? 7 L N N ? 7 V N N ? 7 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 134 A CYS 134 1_555 A SG CYS 151 A CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 E SG CYS 134 E CYS 134 1_555 E SG CYS 151 E CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale1 C SG CYS 58 C CYS 58 1_555 S C3B HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.748 ? covale ? covale2 G SG CYS 58 G CYS 58 1_555 CA CAB HEC . G HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc1 A SG CYS 129 A CYS 129 1_555 I FE1 FES . A FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc2 A ND1 HIS 131 A HIS 131 1_555 I FE2 FES . A FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc3 A SG CYS 149 A CYS 149 1_555 I FE1 FES . A FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc4 A ND1 HIS 152 A HIS 152 1_555 I FE2 FES . A FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc5 B NE2 HIS 97 B HIS 97 1_555 L FE HEM . B HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc6 B NE2 HIS 111 B HIS 111 1_555 K FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc7 B NE2 HIS 198 B HIS 198 1_555 L FE HEM . B HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc8 B NE2 HIS 212 B HIS 212 1_555 K FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc9 C NE2 HIS 62 C HIS 62 1_555 S FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc10 C SD MET 207 C MET 207 1_555 S FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc11 E SG CYS 129 E CYS 129 1_555 T FE1 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc12 E ND1 HIS 131 E HIS 131 1_555 T FE2 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.717 ? metalc ? metalc13 E NE2 HIS 131 E HIS 131 1_555 T FE2 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc14 E SG CYS 149 E CYS 149 1_555 T FE1 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc15 E ND1 HIS 152 E HIS 152 1_555 T FE2 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc16 F NE2 HIS 97 F HIS 97 1_555 W FE HEM . F HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc17 F NE2 HIS 111 F HIS 111 1_555 V FE HEM . F HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc18 F NE2 HIS 198 F HIS 198 1_555 W FE HEM . F HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc19 F NE2 HIS 212 F HIS 212 1_555 V FE HEM . F HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc20 G NE2 HIS 62 G HIS 62 1_555 CA FE HEC . G HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc21 G SD MET 207 G MET 207 1_555 CA FE HEC . G HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # _atom_sites.entry_id 8ASJ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 FES A 1 201 200 FES FES . J 6 PEE A 1 202 3 PEE PEE . K 7 HEM B 1 501 501 HEM HEM . L 7 HEM B 1 502 502 HEM HEM . M 6 PEE B 1 503 1 PEE PEE . N 6 PEE B 1 504 3 PEE PEE . O 6 PEE B 1 505 7 PEE PEE . P 6 PEE B 1 506 9 PEE PEE . Q 6 PEE B 1 507 1 PEE PEE . R 6 PEE B 1 508 2 PEE PEE . S 8 HEC C 1 301 323 HEC HEC . T 5 FES E 1 201 200 FES FES . U 6 PEE E 1 202 10 PEE PEE . V 7 HEM F 1 501 501 HEM HEM . W 7 HEM F 1 502 502 HEM HEM . X 6 PEE F 1 503 2 PEE PEE . Y 6 PEE F 1 504 5 PEE PEE . Z 6 PEE F 1 505 6 PEE PEE . AA 6 PEE F 1 506 12 PEE PEE . BA 9 U10 F 1 507 13 U10 U10 . CA 8 HEC G 1 301 323 HEC HEC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . L 7 125.143 117.445 135.162 1 57.69 ? CHA HEM 502 B 1 HETATM 2 C CHB HEM . . . L 7 128.468 115.468 132.222 1 57.69 ? CHB HEM 502 B 1 HETATM 3 C CHC HEM . . . L 7 128.232 119.362 129.328 1 57.69 ? CHC HEM 502 B 1 HETATM 4 C CHD HEM . . . L 7 125.294 121.524 132.54 1 57.69 ? CHD HEM 502 B 1 HETATM 5 C C1A HEM . . . L 7 126.025 116.552 134.593 1 57.69 ? C1A HEM 502 B 1 HETATM 6 C C2A HEM . . . L 7 126.283 115.205 135.052 1 57.69 ? C2A HEM 502 B 1 HETATM 7 C C3A HEM . . . L 7 127.196 114.658 134.247 1 57.69 ? C3A HEM 502 B 1 HETATM 8 C C4A HEM . . . L 7 127.556 115.638 133.241 1 57.69 ? C4A HEM 502 B 1 HETATM 9 C CMA HEM . . . L 7 127.769 113.23 134.368 1 57.69 ? CMA HEM 502 B 1 HETATM 10 C CAA HEM . . . L 7 125.61 114.53 136.265 1 57.69 ? CAA HEM 502 B 1 HETATM 11 C CBA HEM . . . L 7 124.258 113.97 135.837 1 57.69 ? CBA HEM 502 B 1 HETATM 12 C CGA HEM . . . L 7 123.555 113.385 137.032 1 57.69 ? CGA HEM 502 B 1 HETATM 13 O O1A HEM . . . L 7 122.718 114.096 137.644 1 57.69 ? O1A HEM 502 B 1 HETATM 14 O O2A HEM . . . L 7 123.829 112.206 137.368 1 57.69 ? O2A HEM 502 B 1 HETATM 15 C C1B HEM . . . L 7 128.695 116.341 131.178 1 57.69 ? C1B HEM 502 B 1 HETATM 16 C C2B HEM . . . L 7 129.607 116.131 130.071 1 57.69 ? C2B HEM 502 B 1 HETATM 17 C C3B HEM . . . L 7 129.539 117.203 129.268 1 57.69 ? C3B HEM 502 B 1 HETATM 18 C C4B HEM . . . L 7 128.587 118.134 129.844 1 57.69 ? C4B HEM 502 B 1 HETATM 19 C CMB HEM . . . L 7 130.478 114.869 129.88 1 57.69 ? CMB HEM 502 B 1 HETATM 20 C CAB HEM . . . L 7 130.325 117.453 127.959 1 57.69 ? CAB HEM 502 B 1 HETATM 21 C CBB HEM . . . L 7 131.654 117.317 127.902 1 57.69 ? CBB HEM 502 B 1 HETATM 22 C C1C HEM . . . L 7 127.449 120.306 129.958 1 57.69 ? C1C HEM 502 B 1 HETATM 23 C C2C HEM . . . L 7 127.199 121.66 129.505 1 57.69 ? C2C HEM 502 B 1 HETATM 24 C C3C HEM . . . L 7 126.395 122.253 130.388 1 57.69 ? C3C HEM 502 B 1 HETATM 25 C C4C HEM . . . L 7 126.097 121.302 131.441 1 57.69 ? C4C HEM 502 B 1 HETATM 26 C CMC HEM . . . L 7 127.758 122.316 128.225 1 57.69 ? CMC HEM 502 B 1 HETATM 27 C CAC HEM . . . L 7 125.875 123.702 130.292 1 57.69 ? CAC HEM 502 B 1 HETATM 28 C CBC HEM . . . L 7 125.939 124.511 131.353 1 57.69 ? CBC HEM 502 B 1 HETATM 29 C C1D HEM . . . L 7 124.991 120.614 133.528 1 57.69 ? C1D HEM 502 B 1 HETATM 30 C C2D HEM . . . L 7 124.135 120.848 134.673 1 57.69 ? C2D HEM 502 B 1 HETATM 31 C C3D HEM . . . L 7 124.098 119.727 135.402 1 57.69 ? C3D HEM 502 B 1 HETATM 32 C C4D HEM . . . L 7 124.92 118.736 134.737 1 57.69 ? C4D HEM 502 B 1 HETATM 33 C CMD HEM . . . L 7 123.414 122.176 134.989 1 57.69 ? CMD HEM 502 B 1 HETATM 34 C CAD HEM . . . L 7 123.311 119.506 136.715 1 57.69 ? CAD HEM 502 B 1 HETATM 35 C CBD HEM . . . L 7 121.819 119.354 136.446 1 57.69 ? CBD HEM 502 B 1 HETATM 36 C CGD HEM . . . L 7 121.563 118.009 135.819 1 57.69 ? CGD HEM 502 B 1 HETATM 37 O O1D HEM . . . L 7 121.68 117.89 134.572 1 57.69 ? O1D HEM 502 B 1 HETATM 38 O O2D HEM . . . L 7 121.244 117.052 136.571 1 57.69 ? O2D HEM 502 B 1 HETATM 39 N NA HEM . . . L 7 126.82 116.783 133.486 1 57.69 ? NA HEM 502 B 1 HETATM 40 N NB HEM . . . L 7 128.093 117.573 131.006 1 57.69 ? NB HEM 502 B 1 HETATM 41 N NC HEM . . . L 7 126.758 120.126 131.142 1 57.69 ? NC HEM 502 B 1 HETATM 42 N ND HEM . . . L 7 125.45 119.314 133.599 1 57.69 ? ND HEM 502 B 1 HETATM 43 FE FE HEM . . . L 7 126.737 118.425 132.276 1 57.69 ? FE HEM 502 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 43 #