data_8ASJ # _model_server_result.job_id BwyRCUIqTnE8nAGJYPeRKQ _model_server_result.datetime_utc '2025-03-06 09:05:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8asj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":505}' # _entry.id 8ASJ # _exptl.entry_id 8ASJ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 744.034 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ASJ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ASJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 J N N ? 6 M N N ? 6 N N N ? 6 O N N ? 6 P N N ? 6 Q N N ? 6 R N N ? 6 U N N ? 6 X N N ? 6 Y N N ? 6 Z N N ? 6 AA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 134 A CYS 134 1_555 A SG CYS 151 A CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 E SG CYS 134 E CYS 134 1_555 E SG CYS 151 E CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale1 C SG CYS 58 C CYS 58 1_555 S C3B HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.748 ? covale ? covale2 G SG CYS 58 G CYS 58 1_555 CA CAB HEC . G HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc1 A SG CYS 129 A CYS 129 1_555 I FE1 FES . A FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc2 A ND1 HIS 131 A HIS 131 1_555 I FE2 FES . A FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc3 A SG CYS 149 A CYS 149 1_555 I FE1 FES . A FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc4 A ND1 HIS 152 A HIS 152 1_555 I FE2 FES . A FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc5 B NE2 HIS 97 B HIS 97 1_555 L FE HEM . B HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc6 B NE2 HIS 111 B HIS 111 1_555 K FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc7 B NE2 HIS 198 B HIS 198 1_555 L FE HEM . B HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc8 B NE2 HIS 212 B HIS 212 1_555 K FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc9 C NE2 HIS 62 C HIS 62 1_555 S FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc10 C SD MET 207 C MET 207 1_555 S FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc11 E SG CYS 129 E CYS 129 1_555 T FE1 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc12 E ND1 HIS 131 E HIS 131 1_555 T FE2 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.717 ? metalc ? metalc13 E NE2 HIS 131 E HIS 131 1_555 T FE2 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc14 E SG CYS 149 E CYS 149 1_555 T FE1 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc15 E ND1 HIS 152 E HIS 152 1_555 T FE2 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc16 F NE2 HIS 97 F HIS 97 1_555 W FE HEM . F HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc17 F NE2 HIS 111 F HIS 111 1_555 V FE HEM . F HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc18 F NE2 HIS 198 F HIS 198 1_555 W FE HEM . F HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc19 F NE2 HIS 212 F HIS 212 1_555 V FE HEM . F HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc20 G NE2 HIS 62 G HIS 62 1_555 CA FE HEC . G HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc21 G SD MET 207 G MET 207 1_555 CA FE HEC . G HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? # _chem_comp.formula 'C41 H78 N O8 P' _chem_comp.formula_weight 744.034 _chem_comp.id PEE _chem_comp.mon_nstd_flag n _chem_comp.name 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DOPE # _atom_sites.entry_id 8ASJ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 FES A 1 201 200 FES FES . J 6 PEE A 1 202 3 PEE PEE . K 7 HEM B 1 501 501 HEM HEM . L 7 HEM B 1 502 502 HEM HEM . M 6 PEE B 1 503 1 PEE PEE . N 6 PEE B 1 504 3 PEE PEE . O 6 PEE B 1 505 7 PEE PEE . P 6 PEE B 1 506 9 PEE PEE . Q 6 PEE B 1 507 1 PEE PEE . R 6 PEE B 1 508 2 PEE PEE . S 8 HEC C 1 301 323 HEC HEC . T 5 FES E 1 201 200 FES FES . U 6 PEE E 1 202 10 PEE PEE . V 7 HEM F 1 501 501 HEM HEM . W 7 HEM F 1 502 502 HEM HEM . X 6 PEE F 1 503 2 PEE PEE . Y 6 PEE F 1 504 5 PEE PEE . Z 6 PEE F 1 505 6 PEE PEE . AA 6 PEE F 1 506 12 PEE PEE . BA 9 U10 F 1 507 13 U10 U10 . CA 8 HEC G 1 301 323 HEC HEC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C19 PEE . . . O 6 138.268 96.613 125.887 1 71.58 ? C19 PEE 505 B 1 HETATM 2 C C18 PEE . . . O 6 137.435 97.378 125.16 1 71.58 ? C18 PEE 505 B 1 HETATM 3 C C17 PEE . . . O 6 137.178 97.049 123.662 1 71.58 ? C17 PEE 505 B 1 HETATM 4 C C16 PEE . . . O 6 138.542 96.898 122.916 1 71.58 ? C16 PEE 505 B 1 HETATM 5 C C15 PEE . . . O 6 138.283 96.806 121.374 1 71.58 ? C15 PEE 505 B 1 HETATM 6 C C14 PEE . . . O 6 139.628 96.467 120.641 1 71.58 ? C14 PEE 505 B 1 HETATM 7 C C13 PEE . . . O 6 139.374 96.332 119.102 1 71.58 ? C13 PEE 505 B 1 HETATM 8 C C12 PEE . . . O 6 140.642 95.73 118.421 1 71.58 ? C12 PEE 505 B 1 HETATM 9 C C11 PEE . . . O 6 140.457 95.732 116.874 1 71.58 ? C11 PEE 505 B 1 HETATM 10 C C10 PEE . . . O 6 139.185 94.945 116.463 1 71.58 ? C10 PEE 505 B 1 HETATM 11 O O4 PEE . . . O 6 138.247 95.53 116.026 1 71.58 ? O4 PEE 505 B 1 HETATM 12 O O2 PEE . . . O 6 139.129 93.546 116.6 1 71.58 ? O2 PEE 505 B 1 HETATM 13 C C2 PEE . . . O 6 138.243 92.946 115.675 1 71.58 ? C2 PEE 505 B 1 HETATM 14 C C1 PEE . . . O 6 139.012 92.389 114.471 1 71.58 ? C1 PEE 505 B 1 HETATM 15 O O3P PEE . . . O 6 140.351 92.853 114.469 1 71.58 ? O3P PEE 505 B 1 HETATM 16 P P PEE . . . O 6 141.387 92.19 113.369 1 71.58 ? P PEE 505 B 1 HETATM 17 O O2P PEE . . . O 6 141.901 93.276 112.436 1 71.58 ? O2P PEE 505 B 1 HETATM 18 O O1P PEE . . . O 6 142.556 91.552 114.097 1 71.58 ? O1P PEE 505 B 1 HETATM 19 O O4P PEE . . . O 6 140.583 91.033 112.492 1 71.58 ? O4P PEE 505 B 1 HETATM 20 C C4 PEE . . . O 6 140.155 91.344 111.19 1 71.58 ? C4 PEE 505 B 1 HETATM 21 C C5 PEE . . . O 6 140.171 90.065 110.32 1 71.58 ? C5 PEE 505 B 1 HETATM 22 N N PEE . . . O 6 141.433 89.341 110.531 1 71.58 ? N PEE 505 B 1 HETATM 23 C C3 PEE . . . O 6 137.474 91.81 116.336 1 71.58 ? C3 PEE 505 B 1 HETATM 24 O O3 PEE . . . O 6 137.827 91.701 117.692 1 71.58 ? O3 PEE 505 B 1 HETATM 25 C C30 PEE . . . O 6 136.821 92.11 118.596 1 71.58 ? C30 PEE 505 B 1 HETATM 26 O O5 PEE . . . O 6 136.983 91.94 119.765 1 71.58 ? O5 PEE 505 B 1 HETATM 27 C C31 PEE . . . O 6 135.516 92.737 118.08 1 71.58 ? C31 PEE 505 B 1 HETATM 28 C C32 PEE . . . O 6 134.626 93.226 119.258 1 71.58 ? C32 PEE 505 B 1 HETATM 29 C C33 PEE . . . O 6 135.251 94.495 119.911 1 71.58 ? C33 PEE 505 B 1 HETATM 30 C C34 PEE . . . O 6 134.447 94.88 121.181 1 71.58 ? C34 PEE 505 B 1 HETATM 31 C C35 PEE . . . O 6 132.939 94.989 120.829 1 71.58 ? C35 PEE 505 B 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 371 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 31 #