data_8ATB # _model_server_result.job_id 5XAELDuQlTFzgjSGgPnX2A _model_server_result.datetime_utc '2025-08-29 14:19:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8atb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 8ATB # _exptl.entry_id 8ATB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 490.478 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[6-ethoxy-2-[2-(4-methylpiperazin-1-yl)-2-oxidanylidene-ethyl]indazol-5-yl]-6-(trifluoromethyl)pyridine-2-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ATB _cell.length_a 87.2 _cell.length_b 117.5 _cell.length_c 136.6 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ATB _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 77 AAA LYS 239 1_555 A N CSO 78 AAA CSO 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale2 A C CSO 78 AAA CSO 240 1_555 A N GLN 79 AAA GLN 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale3 A C ARG 126 AAA ARG 288 1_555 A N CSO 127 AAA CSO 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale4 A C CSO 127 AAA CSO 289 1_555 A N LYS 128 AAA LYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale5 A C MET 182 AAA MET 344 1_555 A N TPO 183 AAA TPO 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale6 A C TPO 183 AAA TPO 345 1_555 A N SEP 184 AAA SEP 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale7 A C SEP 184 AAA SEP 346 1_555 A N ARG 185 AAA ARG 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale8 B C LYS 77 BBB LYS 239 1_555 B N CSO 78 BBB CSO 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale9 B C CSO 78 BBB CSO 240 1_555 B N GLN 79 BBB GLN 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale10 B C ARG 126 BBB ARG 288 1_555 B N CSO 127 BBB CSO 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale11 B C CSO 127 BBB CSO 289 1_555 B N LYS 128 BBB LYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale12 B C MET 182 BBB MET 344 1_555 B N TPO 183 BBB TPO 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale13 B C TPO 183 BBB TPO 345 1_555 B N SEP 184 BBB SEP 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale14 B C SEP 184 BBB SEP 346 1_555 B N ARG 185 BBB ARG 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? # _chem_comp.formula 'C23 H25 F3 N6 O3' _chem_comp.formula_weight 490.478 _chem_comp.id O0H _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[6-ethoxy-2-[2-(4-methylpiperazin-1-yl)-2-oxidanylidene-ethyl]indazol-5-yl]-6-(trifluoromethyl)pyridine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C23 N6 O0H sing 264 n n N6 C20 O0H sing 265 n n N6 C21 O0H sing 266 n n C20 C19 O0H sing 267 n n C21 C22 O0H sing 268 n n C22 N5 O0H sing 269 n n C17 C18 O0H sing 270 n n C17 N3 O0H sing 271 n n C14 N3 O0H sing 272 n y C14 C10 O0H doub 273 n y O1 C7 O0H doub 274 n n C19 N5 O0H sing 275 n n N5 C18 O0H sing 276 n n C18 O3 O0H doub 277 n n N3 N4 O0H sing 278 n y C2 C1 O0H doub 279 n y C2 C3 O0H sing 280 n y C10 C9 O0H sing 281 n y C10 C11 O0H sing 282 n y C9 C8 O0H doub 283 n y C7 C3 O0H sing 284 n n C7 N2 O0H sing 285 n n C1 C5 O0H sing 286 n y C3 N1 O0H doub 287 n y N4 C11 O0H doub 288 n y C11 C12 O0H sing 289 n y C8 N2 O0H sing 290 n n C8 C13 O0H sing 291 n y C5 C4 O0H doub 292 n y N1 C4 O0H sing 293 n y C13 C12 O0H doub 294 n y C13 O2 O0H sing 295 n n C4 C6 O0H sing 296 n n O2 C15 O0H sing 297 n n F3 C6 O0H sing 298 n n C6 F1 O0H sing 299 n n C6 F2 O0H sing 300 n n C15 C16 O0H sing 301 n n C5 H1 O0H sing 302 n n C15 H2 O0H sing 303 n n C15 H3 O0H sing 304 n n C17 H4 O0H sing 305 n n C17 H5 O0H sing 306 n n C20 H6 O0H sing 307 n n C20 H7 O0H sing 308 n n C21 H8 O0H sing 309 n n C21 H9 O0H sing 310 n n C22 H10 O0H sing 311 n n C22 H11 O0H sing 312 n n C1 H12 O0H sing 313 n n C2 H13 O0H sing 314 n n N2 H14 O0H sing 315 n n C9 H15 O0H sing 316 n n C12 H16 O0H sing 317 n n C14 H17 O0H sing 318 n n C16 H18 O0H sing 319 n n C16 H19 O0H sing 320 n n C16 H20 O0H sing 321 n n C19 H21 O0H sing 322 n n C19 H22 O0H sing 323 n n C23 H24 O0H sing 324 n n C23 H25 O0H sing 325 n n C23 H26 O0H sing 326 n n # _atom_sites.entry_id 8ATB _atom_sites.fract_transf_matrix[1][1] 0.011468 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008511 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007321 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 O0H AAA 1 501 501 O0H LIG . D 3 GOL AAA 1 502 502 GOL GOL . E 2 O0H BBB 1 501 501 O0H LIG . F 4 HOH AAA 1 601 94 HOH HOH . F 4 HOH AAA 2 602 37 HOH HOH . F 4 HOH AAA 3 603 1 HOH HOH . F 4 HOH AAA 4 604 17 HOH HOH . F 4 HOH AAA 5 605 80 HOH HOH . F 4 HOH AAA 6 606 44 HOH HOH . F 4 HOH AAA 7 607 4 HOH HOH . F 4 HOH AAA 8 608 32 HOH HOH . F 4 HOH AAA 9 609 34 HOH HOH . F 4 HOH AAA 10 610 93 HOH HOH . F 4 HOH AAA 11 611 3 HOH HOH . F 4 HOH AAA 12 612 11 HOH HOH . F 4 HOH AAA 13 613 43 HOH HOH . F 4 HOH AAA 14 614 77 HOH HOH . F 4 HOH AAA 15 615 49 HOH HOH . F 4 HOH AAA 16 616 35 HOH HOH . F 4 HOH AAA 17 617 42 HOH HOH . F 4 HOH AAA 18 618 91 HOH HOH . F 4 HOH AAA 19 619 61 HOH HOH . F 4 HOH AAA 20 620 12 HOH HOH . F 4 HOH AAA 21 621 15 HOH HOH . F 4 HOH AAA 22 622 58 HOH HOH . F 4 HOH AAA 23 623 2 HOH HOH . F 4 HOH AAA 24 624 30 HOH HOH . F 4 HOH AAA 25 625 90 HOH HOH . F 4 HOH AAA 26 626 7 HOH HOH . F 4 HOH AAA 27 627 72 HOH HOH . F 4 HOH AAA 28 628 24 HOH HOH . F 4 HOH AAA 29 629 25 HOH HOH . F 4 HOH AAA 30 630 82 HOH HOH . F 4 HOH AAA 31 631 45 HOH HOH . F 4 HOH AAA 32 632 36 HOH HOH . F 4 HOH AAA 33 633 51 HOH HOH . F 4 HOH AAA 34 634 59 HOH HOH . F 4 HOH AAA 35 635 31 HOH HOH . F 4 HOH AAA 36 636 8 HOH HOH . F 4 HOH AAA 37 637 21 HOH HOH . F 4 HOH AAA 38 638 62 HOH HOH . F 4 HOH AAA 39 639 50 HOH HOH . F 4 HOH AAA 40 640 65 HOH HOH . F 4 HOH AAA 41 641 89 HOH HOH . F 4 HOH AAA 42 642 29 HOH HOH . F 4 HOH AAA 43 643 26 HOH HOH . F 4 HOH AAA 44 644 79 HOH HOH . F 4 HOH AAA 45 645 52 HOH HOH . F 4 HOH AAA 46 646 27 HOH HOH . F 4 HOH AAA 47 647 76 HOH HOH . F 4 HOH AAA 48 648 73 HOH HOH . F 4 HOH AAA 49 649 54 HOH HOH . F 4 HOH AAA 50 650 92 HOH HOH . F 4 HOH AAA 51 651 69 HOH HOH . F 4 HOH AAA 52 652 56 HOH HOH . F 4 HOH AAA 53 653 55 HOH HOH . F 4 HOH AAA 54 654 88 HOH HOH . F 4 HOH AAA 55 655 53 HOH HOH . G 4 HOH BBB 1 601 20 HOH HOH . G 4 HOH BBB 2 602 74 HOH HOH . G 4 HOH BBB 3 603 83 HOH HOH . G 4 HOH BBB 4 604 39 HOH HOH . G 4 HOH BBB 5 605 6 HOH HOH . G 4 HOH BBB 6 606 18 HOH HOH . G 4 HOH BBB 7 607 67 HOH HOH . G 4 HOH BBB 8 608 64 HOH HOH . G 4 HOH BBB 9 609 66 HOH HOH . G 4 HOH BBB 10 610 68 HOH HOH . G 4 HOH BBB 11 611 60 HOH HOH . G 4 HOH BBB 12 612 38 HOH HOH . G 4 HOH BBB 13 613 13 HOH HOH . G 4 HOH BBB 14 614 33 HOH HOH . G 4 HOH BBB 15 615 46 HOH HOH . G 4 HOH BBB 16 616 86 HOH HOH . G 4 HOH BBB 17 617 28 HOH HOH . G 4 HOH BBB 18 618 84 HOH HOH . G 4 HOH BBB 19 619 22 HOH HOH . G 4 HOH BBB 20 620 10 HOH HOH . G 4 HOH BBB 21 621 40 HOH HOH . G 4 HOH BBB 22 622 5 HOH HOH . G 4 HOH BBB 23 623 14 HOH HOH . G 4 HOH BBB 24 624 47 HOH HOH . G 4 HOH BBB 25 625 23 HOH HOH . G 4 HOH BBB 26 626 16 HOH HOH . G 4 HOH BBB 27 627 9 HOH HOH . G 4 HOH BBB 28 628 41 HOH HOH . G 4 HOH BBB 29 629 71 HOH HOH . G 4 HOH BBB 30 630 81 HOH HOH . G 4 HOH BBB 31 631 75 HOH HOH . G 4 HOH BBB 32 632 63 HOH HOH . G 4 HOH BBB 33 633 87 HOH HOH . G 4 HOH BBB 34 634 57 HOH HOH . G 4 HOH BBB 35 635 48 HOH HOH . G 4 HOH BBB 36 636 70 HOH HOH . G 4 HOH BBB 37 637 19 HOH HOH . G 4 HOH BBB 38 638 78 HOH HOH . G 4 HOH BBB 39 639 85 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 O0H . . . E 2 11.117 16.433 -10.185 1 44.99 0 N1 O0H 501 BBB 1 HETATM 2 N N3 O0H . . . E 2 2.983 16.982 -7.395 1 61.29 0 N3 O0H 501 BBB 1 HETATM 3 C C4 O0H . . . E 2 12.335 16.501 -10.739 1 47.12 0 C4 O0H 501 BBB 1 HETATM 4 C C5 O0H . . . E 2 13.43 16.951 -10.023 1 44.6 0 C5 O0H 501 BBB 1 HETATM 5 C C6 O0H . . . E 2 12.415 16.054 -12.169 1 50.26 0 C6 O0H 501 BBB 1 HETATM 6 C C7 O0H . . . E 2 9.583 16.746 -8.308 1 46.22 0 C7 O0H 501 BBB 1 HETATM 7 C C8 O0H . . . E 2 7.187 16.9 -9.032 1 53.22 0 C8 O0H 501 BBB 1 HETATM 8 C C10 O0H . . . E 2 5.14 17.021 -7.771 1 55.88 0 C10 O0H 501 BBB 1 HETATM 9 C C13 O0H . . . E 2 6.449 16.654 -10.202 1 58.66 0 C13 O0H 501 BBB 1 HETATM 10 C C15 O0H . . . E 2 7.04 17.428 -12.403 1 72.73 0 C15 O0H 501 BBB 1 HETATM 11 C C17 O0H . . . E 2 1.663 16.979 -6.779 1 64.19 0 C17 O0H 501 BBB 1 HETATM 12 C C20 O0H . . . E 2 -1.401 19.839 -4.203 1 81.82 0 C20 O0H 501 BBB 1 HETATM 13 C C21 O0H . . . E 2 -2.055 17.622 -4.765 1 83.28 0 C21 O0H 501 BBB 1 HETATM 14 C C22 O0H . . . E 2 -0.622 17.24 -5.062 1 77.69 0 C22 O0H 501 BBB 1 HETATM 15 C C1 O0H . . . E 2 13.266 17.347 -8.708 1 44.61 0 C1 O0H 501 BBB 1 HETATM 16 C C2 O0H . . . E 2 12.014 17.279 -8.133 1 44.32 0 C2 O0H 501 BBB 1 HETATM 17 C C3 O0H . . . E 2 10.966 16.81 -8.899 1 45.29 0 C3 O0H 501 BBB 1 HETATM 18 F F1 O0H . . . E 2 13.62 16.27 -12.698 1 50.66 0 F1 O0H 501 BBB 1 HETATM 19 F F2 O0H . . . E 2 11.543 16.689 -12.949 1 49.26 0 F2 O0H 501 BBB 1 HETATM 20 F F3 O0H . . . E 2 12.168 14.755 -12.308 1 50.86 0 F3 O0H 501 BBB 1 HETATM 21 O O1 O0H . . . E 2 9.421 16.554 -7.107 1 45.57 0 O1 O0H 501 BBB 1 HETATM 22 N N2 O0H . . . E 2 8.594 16.959 -9.208 1 50.09 0 N2 O0H 501 BBB 1 HETATM 23 C C9 O0H . . . E 2 6.554 17.092 -7.823 1 53.91 0 C9 O0H 501 BBB 1 HETATM 24 C C11 O0H . . . E 2 4.403 16.765 -8.954 1 58.18 0 C11 O0H 501 BBB 1 HETATM 25 C C12 O0H . . . E 2 5.072 16.579 -10.187 1 59.07 0 C12 O0H 501 BBB 1 HETATM 26 C C14 O0H . . . E 2 4.166 17.149 -6.785 1 56.89 0 C14 O0H 501 BBB 1 HETATM 27 N N4 O0H . . . E 2 3.071 16.729 -8.721 1 59.82 0 N4 O0H 501 BBB 1 HETATM 28 O O2 O0H . . . E 2 7.178 16.472 -11.345 1 67.74 0 O2 O0H 501 BBB 1 HETATM 29 C C16 O0H . . . E 2 8.314 17.407 -13.192 1 72.37 0 C16 O0H 501 BBB 1 HETATM 30 C C18 O0H . . . E 2 1.159 18.363 -6.375 1 65.58 0 C18 O0H 501 BBB 1 HETATM 31 O O3 O0H . . . E 2 1.61 19.371 -6.907 1 61.45 0 O3 O0H 501 BBB 1 HETATM 32 N N5 O0H . . . E 2 0.181 18.408 -5.44 1 73.66 0 N5 O0H 501 BBB 1 HETATM 33 C C19 O0H . . . E 2 0.05 19.524 -4.499 1 76.88 0 C19 O0H 501 BBB 1 HETATM 34 N N6 O0H . . . E 2 -2.115 18.653 -3.729 1 84.69 0 N6 O0H 501 BBB 1 HETATM 35 C C23 O0H . . . E 2 -3.501 18.972 -3.38 1 80.41 0 C23 O0H 501 BBB 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 35 #