data_8ATB
#
_model_server_result.job_id            K4YUbwfsSH_QQNRsE5L3lA 
_model_server_result.datetime_utc      '2024-12-27 00:21:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8atb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    8ATB 
#
_exptl.entry_id    8ATB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8ATB 
_cell.length_a            87.2 
_cell.length_b            117.5 
_cell.length_c            136.6 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8ATB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,F 1 1 
B,E,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C LYS 77 AAA LYS 239 1_555 A N CSO 78 AAA CSO 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale2 A C CSO 78 AAA CSO 240 1_555 A N GLN 79 AAA GLN 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale3 A C ARG 126 AAA ARG 288 1_555 A N CSO 127 AAA CSO 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale4 A C CSO 127 AAA CSO 289 1_555 A N LYS 128 AAA LYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale5 A C MET 182 AAA MET 344 1_555 A N TPO 183 AAA TPO 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale6 A C TPO 183 AAA TPO 345 1_555 A N SEP 184 AAA SEP 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale7 A C SEP 184 AAA SEP 346 1_555 A N ARG 185 AAA ARG 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale8 B C LYS 77 BBB LYS 239 1_555 B N CSO 78 BBB CSO 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale9 B C CSO 78 BBB CSO 240 1_555 B N GLN 79 BBB GLN 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale10 B C ARG 126 BBB ARG 288 1_555 B N CSO 127 BBB CSO 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale11 B C CSO 127 BBB CSO 289 1_555 B N LYS 128 BBB LYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale12 B C MET 182 BBB MET 344 1_555 B N TPO 183 BBB TPO 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale13 B C TPO 183 BBB TPO 345 1_555 B N SEP 184 BBB SEP 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale14 B C SEP 184 BBB SEP 346 1_555 B N ARG 185 BBB ARG 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 143 n n 
C1 C2 GOL sing 144 n n 
C1 H11 GOL sing 145 n n 
C1 H12 GOL sing 146 n n 
O1 HO1 GOL sing 147 n n 
C2 O2 GOL sing 148 n n 
C2 C3 GOL sing 149 n n 
C2 H2 GOL sing 150 n n 
O2 HO2 GOL sing 151 n n 
C3 O3 GOL sing 152 n n 
C3 H31 GOL sing 153 n n 
C3 H32 GOL sing 154 n n 
O3 HO3 GOL sing 155 n n 
#
_atom_sites.entry_id                     8ATB 
_atom_sites.fract_transf_matrix[1][1]    0.011468 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008511 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007321 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 O0H AAA 1 501 501 O0H LIG . 
D 3 GOL AAA 1 502 502 GOL GOL . 
E 2 O0H BBB 1 501 501 O0H LIG . 
F 4 HOH AAA 1 601 94 HOH HOH . 
F 4 HOH AAA 2 602 37 HOH HOH . 
F 4 HOH AAA 3 603 1 HOH HOH . 
F 4 HOH AAA 4 604 17 HOH HOH . 
F 4 HOH AAA 5 605 80 HOH HOH . 
F 4 HOH AAA 6 606 44 HOH HOH . 
F 4 HOH AAA 7 607 4 HOH HOH . 
F 4 HOH AAA 8 608 32 HOH HOH . 
F 4 HOH AAA 9 609 34 HOH HOH . 
F 4 HOH AAA 10 610 93 HOH HOH . 
F 4 HOH AAA 11 611 3 HOH HOH . 
F 4 HOH AAA 12 612 11 HOH HOH . 
F 4 HOH AAA 13 613 43 HOH HOH . 
F 4 HOH AAA 14 614 77 HOH HOH . 
F 4 HOH AAA 15 615 49 HOH HOH . 
F 4 HOH AAA 16 616 35 HOH HOH . 
F 4 HOH AAA 17 617 42 HOH HOH . 
F 4 HOH AAA 18 618 91 HOH HOH . 
F 4 HOH AAA 19 619 61 HOH HOH . 
F 4 HOH AAA 20 620 12 HOH HOH . 
F 4 HOH AAA 21 621 15 HOH HOH . 
F 4 HOH AAA 22 622 58 HOH HOH . 
F 4 HOH AAA 23 623 2 HOH HOH . 
F 4 HOH AAA 24 624 30 HOH HOH . 
F 4 HOH AAA 25 625 90 HOH HOH . 
F 4 HOH AAA 26 626 7 HOH HOH . 
F 4 HOH AAA 27 627 72 HOH HOH . 
F 4 HOH AAA 28 628 24 HOH HOH . 
F 4 HOH AAA 29 629 25 HOH HOH . 
F 4 HOH AAA 30 630 82 HOH HOH . 
F 4 HOH AAA 31 631 45 HOH HOH . 
F 4 HOH AAA 32 632 36 HOH HOH . 
F 4 HOH AAA 33 633 51 HOH HOH . 
F 4 HOH AAA 34 634 59 HOH HOH . 
F 4 HOH AAA 35 635 31 HOH HOH . 
F 4 HOH AAA 36 636 8 HOH HOH . 
F 4 HOH AAA 37 637 21 HOH HOH . 
F 4 HOH AAA 38 638 62 HOH HOH . 
F 4 HOH AAA 39 639 50 HOH HOH . 
F 4 HOH AAA 40 640 65 HOH HOH . 
F 4 HOH AAA 41 641 89 HOH HOH . 
F 4 HOH AAA 42 642 29 HOH HOH . 
F 4 HOH AAA 43 643 26 HOH HOH . 
F 4 HOH AAA 44 644 79 HOH HOH . 
F 4 HOH AAA 45 645 52 HOH HOH . 
F 4 HOH AAA 46 646 27 HOH HOH . 
F 4 HOH AAA 47 647 76 HOH HOH . 
F 4 HOH AAA 48 648 73 HOH HOH . 
F 4 HOH AAA 49 649 54 HOH HOH . 
F 4 HOH AAA 50 650 92 HOH HOH . 
F 4 HOH AAA 51 651 69 HOH HOH . 
F 4 HOH AAA 52 652 56 HOH HOH . 
F 4 HOH AAA 53 653 55 HOH HOH . 
F 4 HOH AAA 54 654 88 HOH HOH . 
F 4 HOH AAA 55 655 53 HOH HOH . 
G 4 HOH BBB 1 601 20 HOH HOH . 
G 4 HOH BBB 2 602 74 HOH HOH . 
G 4 HOH BBB 3 603 83 HOH HOH . 
G 4 HOH BBB 4 604 39 HOH HOH . 
G 4 HOH BBB 5 605 6 HOH HOH . 
G 4 HOH BBB 6 606 18 HOH HOH . 
G 4 HOH BBB 7 607 67 HOH HOH . 
G 4 HOH BBB 8 608 64 HOH HOH . 
G 4 HOH BBB 9 609 66 HOH HOH . 
G 4 HOH BBB 10 610 68 HOH HOH . 
G 4 HOH BBB 11 611 60 HOH HOH . 
G 4 HOH BBB 12 612 38 HOH HOH . 
G 4 HOH BBB 13 613 13 HOH HOH . 
G 4 HOH BBB 14 614 33 HOH HOH . 
G 4 HOH BBB 15 615 46 HOH HOH . 
G 4 HOH BBB 16 616 86 HOH HOH . 
G 4 HOH BBB 17 617 28 HOH HOH . 
G 4 HOH BBB 18 618 84 HOH HOH . 
G 4 HOH BBB 19 619 22 HOH HOH . 
G 4 HOH BBB 20 620 10 HOH HOH . 
G 4 HOH BBB 21 621 40 HOH HOH . 
G 4 HOH BBB 22 622 5 HOH HOH . 
G 4 HOH BBB 23 623 14 HOH HOH . 
G 4 HOH BBB 24 624 47 HOH HOH . 
G 4 HOH BBB 25 625 23 HOH HOH . 
G 4 HOH BBB 26 626 16 HOH HOH . 
G 4 HOH BBB 27 627 9 HOH HOH . 
G 4 HOH BBB 28 628 41 HOH HOH . 
G 4 HOH BBB 29 629 71 HOH HOH . 
G 4 HOH BBB 30 630 81 HOH HOH . 
G 4 HOH BBB 31 631 75 HOH HOH . 
G 4 HOH BBB 32 632 63 HOH HOH . 
G 4 HOH BBB 33 633 87 HOH HOH . 
G 4 HOH BBB 34 634 57 HOH HOH . 
G 4 HOH BBB 35 635 48 HOH HOH . 
G 4 HOH BBB 36 636 70 HOH HOH . 
G 4 HOH BBB 37 637 19 HOH HOH . 
G 4 HOH BBB 38 638 78 HOH HOH . 
G 4 HOH BBB 39 639 85 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 29.969 38.246 21.692 1 84.82 0 C1 GOL 502 AAA 1 
HETATM 2 O O1 GOL . . . D 3 29.613 38.534 20.342 1 82.36 0 O1 GOL 502 AAA 1 
HETATM 3 C C2 GOL . . . D 3 28.884 38.663 22.663 1 83.45 0 C2 GOL 502 AAA 1 
HETATM 4 O O2 GOL . . . D 3 29.058 40.034 23.019 1 78.78 0 O2 GOL 502 AAA 1 
HETATM 5 C C3 GOL . . . D 3 27.484 38.451 22.125 1 81.11 0 C3 GOL 502 AAA 1 
HETATM 6 O O3 GOL . . . D 3 26.516 38.418 23.171 1 77.43 0 O3 GOL 502 AAA 1 
#
_model_server_stats.io_time_ms              52 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#