data_8ATI # _model_server_result.job_id 1HLVnG5W-YLiFoBZYf5jjw _model_server_result.datetime_utc '2025-07-03 23:03:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ati # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":402}' # _entry.id 8ATI # _exptl.entry_id 8ATI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8ATI _cell.length_a 126.646 _cell.length_b 126.646 _cell.length_c 357.598 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ATI _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 PISA trimeric 3 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,H,M 1 1,2 B,F,I,N 2 1,2 C,D,G,J,K,L,O,P 3 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_554 -y,-x,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 -59.599667 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 312 n n C1 C2 PEG sing 313 n n C1 H11 PEG sing 314 n n C1 H12 PEG sing 315 n n O1 HO1 PEG sing 316 n n C2 O2 PEG sing 317 n n C2 H21 PEG sing 318 n n C2 H22 PEG sing 319 n n O2 C3 PEG sing 320 n n C3 C4 PEG sing 321 n n C3 H31 PEG sing 322 n n C3 H32 PEG sing 323 n n C4 O4 PEG sing 324 n n C4 H41 PEG sing 325 n n C4 H42 PEG sing 326 n n O4 HO4 PEG sing 327 n n # _atom_sites.entry_id 8ATI _atom_sites.fract_transf_matrix[1][1] 0.007896 _atom_sites.fract_transf_matrix[1][2] 0.004559 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009118 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002796 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 3 NAD A 1 401 401 NAD NAD . I 3 NAD B 1 401 401 NAD NAD . J 3 NAD C 1 401 401 NAD NAD . K 3 NAD D 1 401 401 NAD NAD . L 4 PEG D 1 402 402 PEG PEG . M 5 HOH A 1 501 65 HOH HOH . M 5 HOH A 2 502 18 HOH HOH . M 5 HOH A 3 503 47 HOH HOH . M 5 HOH A 4 504 217 HOH HOH . M 5 HOH A 5 505 149 HOH HOH . M 5 HOH A 6 506 46 HOH HOH . M 5 HOH A 7 507 203 HOH HOH . M 5 HOH A 8 508 271 HOH HOH . M 5 HOH A 9 509 182 HOH HOH . M 5 HOH A 10 510 94 HOH HOH . M 5 HOH A 11 511 35 HOH HOH . M 5 HOH A 12 512 303 HOH HOH . M 5 HOH A 13 513 10 HOH HOH . M 5 HOH A 14 514 197 HOH HOH . M 5 HOH A 15 515 204 HOH HOH . M 5 HOH A 16 516 51 HOH HOH . M 5 HOH A 17 517 91 HOH HOH . M 5 HOH A 18 518 188 HOH HOH . M 5 HOH A 19 519 34 HOH HOH . M 5 HOH A 20 520 24 HOH HOH . M 5 HOH A 21 521 59 HOH HOH . M 5 HOH A 22 522 146 HOH HOH . M 5 HOH A 23 523 25 HOH HOH . M 5 HOH A 24 524 336 HOH HOH . M 5 HOH A 25 525 263 HOH HOH . M 5 HOH A 26 526 6 HOH HOH . M 5 HOH A 27 527 312 HOH HOH . M 5 HOH A 28 528 88 HOH HOH . M 5 HOH A 29 529 83 HOH HOH . M 5 HOH A 30 530 85 HOH HOH . M 5 HOH A 31 531 326 HOH HOH . M 5 HOH A 32 532 235 HOH HOH . M 5 HOH A 33 533 7 HOH HOH . M 5 HOH A 34 534 176 HOH HOH . M 5 HOH A 35 535 321 HOH HOH . M 5 HOH A 36 536 19 HOH HOH . M 5 HOH A 37 537 33 HOH HOH . M 5 HOH A 38 538 82 HOH HOH . M 5 HOH A 39 539 74 HOH HOH . M 5 HOH A 40 540 93 HOH HOH . M 5 HOH A 41 541 319 HOH HOH . M 5 HOH A 42 542 63 HOH HOH . M 5 HOH A 43 543 304 HOH HOH . M 5 HOH A 44 544 215 HOH HOH . M 5 HOH A 45 545 183 HOH HOH . M 5 HOH A 46 546 30 HOH HOH . M 5 HOH A 47 547 282 HOH HOH . M 5 HOH A 48 548 84 HOH HOH . M 5 HOH A 49 549 324 HOH HOH . M 5 HOH A 50 550 262 HOH HOH . M 5 HOH A 51 551 168 HOH HOH . M 5 HOH A 52 552 102 HOH HOH . M 5 HOH A 53 553 302 HOH HOH . M 5 HOH A 54 554 107 HOH HOH . M 5 HOH A 55 555 71 HOH HOH . M 5 HOH A 56 556 272 HOH HOH . M 5 HOH A 57 557 334 HOH HOH . M 5 HOH A 58 558 290 HOH HOH . M 5 HOH A 59 559 275 HOH HOH . M 5 HOH A 60 560 198 HOH HOH . M 5 HOH A 61 561 135 HOH HOH . M 5 HOH A 62 562 325 HOH HOH . M 5 HOH A 63 563 219 HOH HOH . M 5 HOH A 64 564 180 HOH HOH . M 5 HOH A 65 565 166 HOH HOH . M 5 HOH A 66 566 279 HOH HOH . M 5 HOH A 67 567 323 HOH HOH . M 5 HOH A 68 568 48 HOH HOH . M 5 HOH A 69 569 276 HOH HOH . M 5 HOH A 70 570 207 HOH HOH . N 5 HOH B 1 501 284 HOH HOH . N 5 HOH B 2 502 174 HOH HOH . N 5 HOH B 3 503 29 HOH HOH . N 5 HOH B 4 504 8 HOH HOH . N 5 HOH B 5 505 172 HOH HOH . N 5 HOH B 6 506 246 HOH HOH . N 5 HOH B 7 507 15 HOH HOH . N 5 HOH B 8 508 21 HOH HOH . N 5 HOH B 9 509 53 HOH HOH . N 5 HOH B 10 510 96 HOH HOH . N 5 HOH B 11 511 213 HOH HOH . N 5 HOH B 12 512 79 HOH HOH . N 5 HOH B 13 513 9 HOH HOH . N 5 HOH B 14 514 14 HOH HOH . N 5 HOH B 15 515 26 HOH HOH . N 5 HOH B 16 516 2 HOH HOH . N 5 HOH B 17 517 170 HOH HOH . N 5 HOH B 18 518 292 HOH HOH . N 5 HOH B 19 519 32 HOH HOH . N 5 HOH B 20 520 66 HOH HOH . N 5 HOH B 21 521 55 HOH HOH . N 5 HOH B 22 522 22 HOH HOH . N 5 HOH B 23 523 208 HOH HOH . N 5 HOH B 24 524 138 HOH HOH . N 5 HOH B 25 525 236 HOH HOH . N 5 HOH B 26 526 233 HOH HOH . N 5 HOH B 27 527 20 HOH HOH . N 5 HOH B 28 528 154 HOH HOH . N 5 HOH B 29 529 4 HOH HOH . N 5 HOH B 30 530 1 HOH HOH . N 5 HOH B 31 531 148 HOH HOH . N 5 HOH B 32 532 150 HOH HOH . N 5 HOH B 33 533 40 HOH HOH . N 5 HOH B 34 534 36 HOH HOH . N 5 HOH B 35 535 39 HOH HOH . N 5 HOH B 36 536 13 HOH HOH . N 5 HOH B 37 537 67 HOH HOH . N 5 HOH B 38 538 237 HOH HOH . N 5 HOH B 39 539 16 HOH HOH . N 5 HOH B 40 540 45 HOH HOH . N 5 HOH B 41 541 191 HOH HOH . N 5 HOH B 42 542 273 HOH HOH . N 5 HOH B 43 543 43 HOH HOH . N 5 HOH B 44 544 72 HOH HOH . N 5 HOH B 45 545 60 HOH HOH . N 5 HOH B 46 546 44 HOH HOH . N 5 HOH B 47 547 306 HOH HOH . N 5 HOH B 48 548 308 HOH HOH . N 5 HOH B 49 549 41 HOH HOH . N 5 HOH B 50 550 81 HOH HOH . N 5 HOH B 51 551 27 HOH HOH . N 5 HOH B 52 552 227 HOH HOH . N 5 HOH B 53 553 28 HOH HOH . N 5 HOH B 54 554 162 HOH HOH . N 5 HOH B 55 555 160 HOH HOH . N 5 HOH B 56 556 159 HOH HOH . N 5 HOH B 57 557 50 HOH HOH . N 5 HOH B 58 558 89 HOH HOH . N 5 HOH B 59 559 307 HOH HOH . N 5 HOH B 60 560 296 HOH HOH . N 5 HOH B 61 561 97 HOH HOH . N 5 HOH B 62 562 294 HOH HOH . N 5 HOH B 63 563 68 HOH HOH . N 5 HOH B 64 564 31 HOH HOH . N 5 HOH B 65 565 86 HOH HOH . N 5 HOH B 66 566 214 HOH HOH . N 5 HOH B 67 567 184 HOH HOH . N 5 HOH B 68 568 49 HOH HOH . N 5 HOH B 69 569 64 HOH HOH . N 5 HOH B 70 570 57 HOH HOH . N 5 HOH B 71 571 178 HOH HOH . N 5 HOH B 72 572 316 HOH HOH . N 5 HOH B 73 573 165 HOH HOH . N 5 HOH B 74 574 90 HOH HOH . N 5 HOH B 75 575 98 HOH HOH . N 5 HOH B 76 576 269 HOH HOH . N 5 HOH B 77 577 101 HOH HOH . N 5 HOH B 78 578 274 HOH HOH . N 5 HOH B 79 579 234 HOH HOH . N 5 HOH B 80 580 69 HOH HOH . N 5 HOH B 81 581 337 HOH HOH . N 5 HOH B 82 582 140 HOH HOH . N 5 HOH B 83 583 249 HOH HOH . N 5 HOH B 84 584 281 HOH HOH . N 5 HOH B 85 585 80 HOH HOH . N 5 HOH B 86 586 250 HOH HOH . N 5 HOH B 87 587 251 HOH HOH . N 5 HOH B 88 588 266 HOH HOH . N 5 HOH B 89 589 155 HOH HOH . N 5 HOH B 90 590 293 HOH HOH . N 5 HOH B 91 591 278 HOH HOH . N 5 HOH B 92 592 277 HOH HOH . N 5 HOH B 93 593 265 HOH HOH . N 5 HOH B 94 594 206 HOH HOH . N 5 HOH B 95 595 95 HOH HOH . N 5 HOH B 96 596 17 HOH HOH . N 5 HOH B 97 597 87 HOH HOH . N 5 HOH B 98 598 280 HOH HOH . O 5 HOH C 1 501 42 HOH HOH . O 5 HOH C 2 502 331 HOH HOH . O 5 HOH C 3 503 338 HOH HOH . O 5 HOH C 4 504 298 HOH HOH . O 5 HOH C 5 505 171 HOH HOH . O 5 HOH C 6 506 141 HOH HOH . O 5 HOH C 7 507 193 HOH HOH . O 5 HOH C 8 508 109 HOH HOH . O 5 HOH C 9 509 238 HOH HOH . O 5 HOH C 10 510 201 HOH HOH . O 5 HOH C 11 511 134 HOH HOH . O 5 HOH C 12 512 267 HOH HOH . O 5 HOH C 13 513 122 HOH HOH . O 5 HOH C 14 514 120 HOH HOH . O 5 HOH C 15 515 295 HOH HOH . O 5 HOH C 16 516 175 HOH HOH . O 5 HOH C 17 517 70 HOH HOH . P 5 HOH D 1 501 105 HOH HOH . P 5 HOH D 2 502 209 HOH HOH . P 5 HOH D 3 503 192 HOH HOH . P 5 HOH D 4 504 329 HOH HOH . P 5 HOH D 5 505 142 HOH HOH . P 5 HOH D 6 506 339 HOH HOH . P 5 HOH D 7 507 127 HOH HOH . P 5 HOH D 8 508 112 HOH HOH . P 5 HOH D 9 509 194 HOH HOH . P 5 HOH D 10 510 205 HOH HOH . P 5 HOH D 11 511 330 HOH HOH . P 5 HOH D 12 512 111 HOH HOH . P 5 HOH D 13 513 116 HOH HOH . P 5 HOH D 14 514 161 HOH HOH . P 5 HOH D 15 515 104 HOH HOH . P 5 HOH D 16 516 181 HOH HOH . P 5 HOH D 17 517 259 HOH HOH . P 5 HOH D 18 518 132 HOH HOH . P 5 HOH D 19 519 228 HOH HOH . P 5 HOH D 20 520 190 HOH HOH . P 5 HOH D 21 521 129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . L 4 23.617 53.045 -66.07 1 76.98 0 C1 PEG 402 D 1 HETATM 2 O O1 PEG . . . L 4 22.37 53.225 -66.74 1 76.94 0 O1 PEG 402 D 1 HETATM 3 C C2 PEG . . . L 4 23.433 52.69 -64.604 1 76 0 C2 PEG 402 D 1 HETATM 4 O O2 PEG . . . L 4 24.659 52.32 -63.97 1 75.41 0 O2 PEG 402 D 1 HETATM 5 C C3 PEG . . . L 4 24.801 52.867 -62.655 1 74.99 0 C3 PEG 402 D 1 HETATM 6 C C4 PEG . . . L 4 24.209 51.947 -61.597 1 75.2 0 C4 PEG 402 D 1 HETATM 7 O O4 PEG . . . L 4 22.798 52.117 -61.412 1 75.27 0 O4 PEG 402 D 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #