data_8ATN
#
_model_server_result.job_id            NRH-5AVt0ATI1cV7MhyDJw 
_model_server_result.datetime_utc      '2025-01-13 08:00:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8atn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1001}' 
#
_entry.id    8ATN 
#
_exptl.entry_id    8ATN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              464.481 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ~{N}-[3-methyl-2-(3-methyl-3-oxidanyl-butyl)-6-(2-oxidanylpropan-2-yl)benzimidazol-5-yl]-6-(trifluoromethyl)pyridine-2-carboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8ATN 
_cell.length_a            88.194 
_cell.length_b            118.899 
_cell.length_c            140.475 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8ATN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C MET 182 AAA MET 344 1_555 A N TPO 183 AAA TPO 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? 
covale ? covale2 A C TPO 183 AAA TPO 345 1_555 A N SEP 184 AAA SEP 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? 
covale ? covale3 A C SEP 184 AAA SEP 346 1_555 A N ARG 185 AAA ARG 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale4 B C MET 182 BBB MET 344 1_555 B N TPO 183 BBB TPO 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? 
covale ? covale5 B C TPO 183 BBB TPO 345 1_555 B N SEP 184 BBB SEP 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? 
covale ? covale6 B C SEP 184 BBB SEP 346 1_555 B N ARG 185 BBB ARG 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
#
_chem_comp.formula           'C23 H27 F3 N4 O3' 
_chem_comp.formula_weight    464.481 
_chem_comp.id                O06 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ~{N}-[3-methyl-2-(3-methyl-3-oxidanyl-butyl)-6-(2-oxidanylpropan-2-yl)benzimidazol-5-yl]-6-(trifluoromethyl)pyridine-2-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C19 C17 O06 sing 237 n n 
C14 N13 O06 sing 238 n n 
C32 C17 O06 sing 239 n n 
C17 O18 O06 sing 240 n n 
C17 C16 O06 sing 241 n n 
O31 C20 O06 doub 242 n n 
N13 C12 O06 sing 243 n y 
N13 C4 O06 sing 244 n y 
C15 C16 O06 sing 245 n n 
C15 C12 O06 sing 246 n n 
C26 C25 O06 doub 247 n y 
C26 C21 O06 sing 248 n y 
C12 N11 O06 doub 249 n y 
C25 C24 O06 sing 250 n y 
C3 C4 O06 doub 251 n y 
C3 C2 O06 sing 252 n y 
C20 C21 O06 sing 253 n n 
C20 N1 O06 sing 254 n n 
C4 C5 O06 sing 255 n y 
C21 N22 O06 doub 256 n y 
N1 C2 O06 sing 257 n n 
N11 C5 O06 sing 258 n y 
C2 C7 O06 doub 259 n y 
C24 C23 O06 doub 260 n y 
C5 C6 O06 doub 261 n y 
N22 C23 O06 sing 262 n y 
C23 C27 O06 sing 263 n n 
C7 C6 O06 sing 264 n y 
C7 C8 O06 sing 265 n n 
C27 F28 O06 sing 266 n n 
C27 F30 O06 sing 267 n n 
C27 F29 O06 sing 268 n n 
O9 C8 O06 sing 269 n n 
C8 C33 O06 sing 270 n n 
C8 C10 O06 sing 271 n n 
C14 H1 O06 sing 272 n n 
C14 H2 O06 sing 273 n n 
C14 H3 O06 sing 274 n n 
C6 H4 O06 sing 275 n n 
C10 H5 O06 sing 276 n n 
C10 H6 O06 sing 277 n n 
C10 H7 O06 sing 278 n n 
N1 H8 O06 sing 279 n n 
C3 H9 O06 sing 280 n n 
C24 H10 O06 sing 281 n n 
C25 H11 O06 sing 282 n n 
C26 H12 O06 sing 283 n n 
C33 H13 O06 sing 284 n n 
C33 H14 O06 sing 285 n n 
C33 H15 O06 sing 286 n n 
O9 H16 O06 sing 287 n n 
C15 H17 O06 sing 288 n n 
C15 H18 O06 sing 289 n n 
C16 H19 O06 sing 290 n n 
C16 H20 O06 sing 291 n n 
C19 H21 O06 sing 292 n n 
C19 H22 O06 sing 293 n n 
C19 H23 O06 sing 294 n n 
C32 H24 O06 sing 295 n n 
C32 H25 O06 sing 296 n n 
C32 H26 O06 sing 297 n n 
O18 H27 O06 sing 298 n n 
#
_atom_sites.entry_id                     8ATN 
_atom_sites.fract_transf_matrix[1][1]    0.011339 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00841 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007119 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 O06 AAA 1 1001 1001 O06 DRG . 
D 2 O06 BBB 1 1001 1001 O06 DRG . 
E 3 HOH AAA 1 1101 3 HOH HOH . 
E 3 HOH AAA 2 1102 6 HOH HOH . 
E 3 HOH AAA 3 1103 28 HOH HOH . 
E 3 HOH AAA 4 1104 12 HOH HOH . 
E 3 HOH AAA 5 1105 8 HOH HOH . 
E 3 HOH AAA 6 1106 4 HOH HOH . 
E 3 HOH AAA 7 1107 7 HOH HOH . 
E 3 HOH AAA 8 1108 25 HOH HOH . 
E 3 HOH AAA 9 1109 13 HOH HOH . 
E 3 HOH AAA 10 1110 10 HOH HOH . 
E 3 HOH AAA 11 1111 5 HOH HOH . 
E 3 HOH AAA 12 1112 11 HOH HOH . 
F 3 HOH BBB 1 1101 16 HOH HOH . 
F 3 HOH BBB 2 1102 2 HOH HOH . 
F 3 HOH BBB 3 1103 23 HOH HOH . 
F 3 HOH BBB 4 1104 19 HOH HOH . 
F 3 HOH BBB 5 1105 17 HOH HOH . 
F 3 HOH BBB 6 1106 21 HOH HOH . 
F 3 HOH BBB 7 1107 20 HOH HOH . 
F 3 HOH BBB 8 1108 24 HOH HOH . 
F 3 HOH BBB 9 1109 18 HOH HOH . 
F 3 HOH BBB 10 1110 15 HOH HOH . 
F 3 HOH BBB 11 1111 26 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 O06 . . . C 2 21.11 39.301 6.51 1 70.04 0 C4 O06 1001 AAA 1 
HETATM 2 C C14 O06 . . . C 2 20.23 39.289 4.051 1 68.44 0 C14 O06 1001 AAA 1 
HETATM 3 C C5 O06 . . . C 2 20.504 39.224 7.743 1 70.5 0 C5 O06 1001 AAA 1 
HETATM 4 C C6 O06 . . . C 2 21.287 39.293 8.891 1 70.22 0 C6 O06 1001 AAA 1 
HETATM 5 C C7 O06 . . . C 2 22.681 39.391 8.835 1 70.81 0 C7 O06 1001 AAA 1 
HETATM 6 C C8 O06 . . . C 2 23.482 39.445 10.159 1 66.19 0 C8 O06 1001 AAA 1 
HETATM 7 C C10 O06 . . . C 2 22.591 39.225 11.394 1 71.74 0 C10 O06 1001 AAA 1 
HETATM 8 C C12 O06 . . . C 2 18.979 39.137 6.272 1 68.08 0 C12 O06 1001 AAA 1 
HETATM 9 N N1 O06 . . . C 2 24.681 39.535 7.524 1 68.6 0 N1 O06 1001 AAA 1 
HETATM 10 C C3 O06 . . . C 2 22.503 39.42 6.427 1 74.36 0 C3 O06 1001 AAA 1 
HETATM 11 F F28 O06 . . . C 2 29.013 41.573 10.015 1 68.7 0 F28 O06 1001 AAA 1 
HETATM 12 C C27 O06 . . . C 2 29.075 40.265 9.827 1 70.94 0 C27 O06 1001 AAA 1 
HETATM 13 F F29 O06 . . . C 2 28.183 39.699 10.599 1 64.2 0 F29 O06 1001 AAA 1 
HETATM 14 F F30 O06 . . . C 2 30.271 39.788 10.145 1 76.28 0 F30 O06 1001 AAA 1 
HETATM 15 C C23 O06 . . . C 2 28.67 39.811 8.434 1 68.96 0 C23 O06 1001 AAA 1 
HETATM 16 N N22 O06 . . . C 2 27.378 39.891 8.075 1 69.06 0 N22 O06 1001 AAA 1 
HETATM 17 C C24 O06 . . . C 2 29.612 39.257 7.587 1 71.83 0 C24 O06 1001 AAA 1 
HETATM 18 C C25 O06 . . . C 2 29.199 38.828 6.329 1 76.59 0 C25 O06 1001 AAA 1 
HETATM 19 C C26 O06 . . . C 2 27.858 38.947 5.962 1 74.44 0 C26 O06 1001 AAA 1 
HETATM 20 C C21 O06 . . . C 2 26.961 39.491 6.863 1 69.42 0 C21 O06 1001 AAA 1 
HETATM 21 C C20 O06 . . . C 2 25.51 39.604 6.461 1 69.15 0 C20 O06 1001 AAA 1 
HETATM 22 O O31 O06 . . . C 2 25.225 39.827 5.275 1 65.07 0 O31 O06 1001 AAA 1 
HETATM 23 C C2 O06 . . . C 2 23.321 39.472 7.575 1 70.62 0 C2 O06 1001 AAA 1 
HETATM 24 C C33 O06 . . . C 2 24.1 40.807 10.225 1 64.3 0 C33 O06 1001 AAA 1 
HETATM 25 O O9 O06 . . . C 2 24.535 38.466 10.138 1 63.59 0 O9 O06 1001 AAA 1 
HETATM 26 N N11 O06 . . . C 2 19.193 39.127 7.562 1 67.09 0 N11 O06 1001 AAA 1 
HETATM 27 N N13 O06 . . . C 2 20.121 39.241 5.626 1 74.44 0 N13 O06 1001 AAA 1 
HETATM 28 C C15 O06 . . . C 2 17.643 39.052 5.637 1 70.2 0 C15 O06 1001 AAA 1 
HETATM 29 C C16 O06 . . . C 2 17.276 37.601 5.672 1 74.72 0 C16 O06 1001 AAA 1 
HETATM 30 C C17 O06 . . . C 2 16.189 37.292 4.649 1 70.83 0 C17 O06 1001 AAA 1 
HETATM 31 C C19 O06 . . . C 2 16.334 38.083 3.34 1 75.49 0 C19 O06 1001 AAA 1 
HETATM 32 C C32 O06 . . . C 2 16.216 35.79 4.397 1 65.15 0 C32 O06 1001 AAA 1 
HETATM 33 O O18 O06 . . . C 2 14.935 37.628 5.275 1 75.38 0 O18 O06 1001 AAA 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           37 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           260 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           33 
#