data_8ATY # _model_server_result.job_id r0uhCKvUGJLcxwB8iZ89gA _model_server_result.datetime_utc '2024-11-28 14:06:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8aty # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 8ATY # _exptl.entry_id 8ATY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 349.835 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[4-chloranyl-6-(5,6,7,8-tetrahydronaphthalen-1-ylamino)pyrimidin-2-yl]sulfanylethanoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ATY _cell.length_a 65.331 _cell.length_b 65.331 _cell.length_c 156.041 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ATY _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C16 H16 Cl N3 O2 S' _chem_comp.formula_weight 349.835 _chem_comp.id O7O _chem_comp.mon_nstd_flag . _chem_comp.name '2-[4-chloranyl-6-(5,6,7,8-tetrahydronaphthalen-1-ylamino)pyrimidin-2-yl]sulfanylethanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL C O7O sing 250 n n C N O7O doub 251 n y C C15 O7O sing 252 n y N C1 O7O sing 253 n y C15 C4 O7O doub 254 n y C1 S O7O sing 255 n n C1 N1 O7O doub 256 n y C13 C12 O7O doub 257 n y C13 C14 O7O sing 258 n y C12 C11 O7O sing 259 n y C4 N1 O7O sing 260 n y C4 N2 O7O sing 261 n n C9 C10 O7O sing 262 n n C9 C8 O7O sing 263 n n C14 C5 O7O doub 264 n y C11 C10 O7O sing 265 n n C11 C6 O7O doub 266 n y S C2 O7O sing 267 n n C5 C6 O7O sing 268 n y C5 N2 O7O sing 269 n n C6 C7 O7O sing 270 n n C7 C8 O7O sing 271 n n O C3 O7O doub 272 n n O1 C3 O7O sing 273 n n C3 C2 O7O sing 274 n n C2 H1 O7O sing 275 n n C2 H2 O7O sing 276 n n O1 H3 O7O sing 277 n n C15 H4 O7O sing 278 n n N2 H5 O7O sing 279 n n C14 H6 O7O sing 280 n n C13 H7 O7O sing 281 n n C12 H8 O7O sing 282 n n C10 H9 O7O sing 283 n n C10 H10 O7O sing 284 n n C9 H11 O7O sing 285 n n C9 H12 O7O sing 286 n n C8 H13 O7O sing 287 n n C8 H14 O7O sing 288 n n C7 H15 O7O sing 289 n n C7 H16 O7O sing 290 n n # _atom_sites.entry_id 8ATY _atom_sites.fract_transf_matrix[1][1] 0.015307 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015307 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006409 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 O7O A 1 501 1 O7O YYY . C 2 O7O A 1 502 2 O7O YYY . D 3 GOL A 1 503 1 GOL GOL . E 3 GOL A 1 504 2 GOL GOL . F 3 GOL A 1 505 3 GOL GOL . G 3 GOL A 1 506 4 GOL GOL . H 3 GOL A 1 507 5 GOL GOL . I 4 HOH A 1 601 168 HOH HOH . I 4 HOH A 2 602 173 HOH HOH . I 4 HOH A 3 603 163 HOH HOH . I 4 HOH A 4 604 172 HOH HOH . I 4 HOH A 5 605 174 HOH HOH . I 4 HOH A 6 606 150 HOH HOH . I 4 HOH A 7 607 164 HOH HOH . I 4 HOH A 8 608 34 HOH HOH . I 4 HOH A 9 609 161 HOH HOH . I 4 HOH A 10 610 91 HOH HOH . I 4 HOH A 11 611 39 HOH HOH . I 4 HOH A 12 612 165 HOH HOH . I 4 HOH A 13 613 113 HOH HOH . I 4 HOH A 14 614 178 HOH HOH . I 4 HOH A 15 615 49 HOH HOH . I 4 HOH A 16 616 129 HOH HOH . I 4 HOH A 17 617 88 HOH HOH . I 4 HOH A 18 618 177 HOH HOH . I 4 HOH A 19 619 115 HOH HOH . I 4 HOH A 20 620 21 HOH HOH . I 4 HOH A 21 621 157 HOH HOH . I 4 HOH A 22 622 53 HOH HOH . I 4 HOH A 23 623 29 HOH HOH . I 4 HOH A 24 624 54 HOH HOH . I 4 HOH A 25 625 98 HOH HOH . I 4 HOH A 26 626 126 HOH HOH . I 4 HOH A 27 627 59 HOH HOH . I 4 HOH A 28 628 86 HOH HOH . I 4 HOH A 29 629 104 HOH HOH . I 4 HOH A 30 630 69 HOH HOH . I 4 HOH A 31 631 149 HOH HOH . I 4 HOH A 32 632 55 HOH HOH . I 4 HOH A 33 633 96 HOH HOH . I 4 HOH A 34 634 18 HOH HOH . I 4 HOH A 35 635 67 HOH HOH . I 4 HOH A 36 636 33 HOH HOH . I 4 HOH A 37 637 146 HOH HOH . I 4 HOH A 38 638 5 HOH HOH . I 4 HOH A 39 639 27 HOH HOH . I 4 HOH A 40 640 83 HOH HOH . I 4 HOH A 41 641 85 HOH HOH . I 4 HOH A 42 642 114 HOH HOH . I 4 HOH A 43 643 79 HOH HOH . I 4 HOH A 44 644 41 HOH HOH . I 4 HOH A 45 645 45 HOH HOH . I 4 HOH A 46 646 8 HOH HOH . I 4 HOH A 47 647 131 HOH HOH . I 4 HOH A 48 648 56 HOH HOH . I 4 HOH A 49 649 62 HOH HOH . I 4 HOH A 50 650 156 HOH HOH . I 4 HOH A 51 651 57 HOH HOH . I 4 HOH A 52 652 1 HOH HOH . I 4 HOH A 53 653 35 HOH HOH . I 4 HOH A 54 654 64 HOH HOH . I 4 HOH A 55 655 170 HOH HOH . I 4 HOH A 56 656 36 HOH HOH . I 4 HOH A 57 657 74 HOH HOH . I 4 HOH A 58 658 25 HOH HOH . I 4 HOH A 59 659 2 HOH HOH . I 4 HOH A 60 660 31 HOH HOH . I 4 HOH A 61 661 48 HOH HOH . I 4 HOH A 62 662 162 HOH HOH . I 4 HOH A 63 663 119 HOH HOH . I 4 HOH A 64 664 23 HOH HOH . I 4 HOH A 65 665 58 HOH HOH . I 4 HOH A 66 666 87 HOH HOH . I 4 HOH A 67 667 120 HOH HOH . I 4 HOH A 68 668 10 HOH HOH . I 4 HOH A 69 669 169 HOH HOH . I 4 HOH A 70 670 3 HOH HOH . I 4 HOH A 71 671 159 HOH HOH . I 4 HOH A 72 672 50 HOH HOH . I 4 HOH A 73 673 110 HOH HOH . I 4 HOH A 74 674 101 HOH HOH . I 4 HOH A 75 675 20 HOH HOH . I 4 HOH A 76 676 13 HOH HOH . I 4 HOH A 77 677 63 HOH HOH . I 4 HOH A 78 678 65 HOH HOH . I 4 HOH A 79 679 73 HOH HOH . I 4 HOH A 80 680 19 HOH HOH . I 4 HOH A 81 681 92 HOH HOH . I 4 HOH A 82 682 132 HOH HOH . I 4 HOH A 83 683 99 HOH HOH . I 4 HOH A 84 684 51 HOH HOH . I 4 HOH A 85 685 106 HOH HOH . I 4 HOH A 86 686 127 HOH HOH . I 4 HOH A 87 687 103 HOH HOH . I 4 HOH A 88 688 166 HOH HOH . I 4 HOH A 89 689 26 HOH HOH . I 4 HOH A 90 690 107 HOH HOH . I 4 HOH A 91 691 9 HOH HOH . I 4 HOH A 92 692 171 HOH HOH . I 4 HOH A 93 693 47 HOH HOH . I 4 HOH A 94 694 44 HOH HOH . I 4 HOH A 95 695 72 HOH HOH . I 4 HOH A 96 696 7 HOH HOH . I 4 HOH A 97 697 32 HOH HOH . I 4 HOH A 98 698 17 HOH HOH . I 4 HOH A 99 699 60 HOH HOH . I 4 HOH A 100 700 133 HOH HOH . I 4 HOH A 101 701 6 HOH HOH . I 4 HOH A 102 702 93 HOH HOH . I 4 HOH A 103 703 95 HOH HOH . I 4 HOH A 104 704 94 HOH HOH . I 4 HOH A 105 705 46 HOH HOH . I 4 HOH A 106 706 11 HOH HOH . I 4 HOH A 107 707 40 HOH HOH . I 4 HOH A 108 708 30 HOH HOH . I 4 HOH A 109 709 71 HOH HOH . I 4 HOH A 110 710 77 HOH HOH . I 4 HOH A 111 711 75 HOH HOH . I 4 HOH A 112 712 112 HOH HOH . I 4 HOH A 113 713 12 HOH HOH . I 4 HOH A 114 714 80 HOH HOH . I 4 HOH A 115 715 160 HOH HOH . I 4 HOH A 116 716 180 HOH HOH . I 4 HOH A 117 717 81 HOH HOH . I 4 HOH A 118 718 28 HOH HOH . I 4 HOH A 119 719 22 HOH HOH . I 4 HOH A 120 720 38 HOH HOH . I 4 HOH A 121 721 37 HOH HOH . I 4 HOH A 122 722 24 HOH HOH . I 4 HOH A 123 723 102 HOH HOH . I 4 HOH A 124 724 158 HOH HOH . I 4 HOH A 125 725 117 HOH HOH . I 4 HOH A 126 726 100 HOH HOH . I 4 HOH A 127 727 15 HOH HOH . I 4 HOH A 128 728 52 HOH HOH . I 4 HOH A 129 729 175 HOH HOH . I 4 HOH A 130 730 154 HOH HOH . I 4 HOH A 131 731 4 HOH HOH . I 4 HOH A 132 732 89 HOH HOH . I 4 HOH A 133 733 121 HOH HOH . I 4 HOH A 134 734 122 HOH HOH . I 4 HOH A 135 735 124 HOH HOH . I 4 HOH A 136 736 140 HOH HOH . I 4 HOH A 137 737 70 HOH HOH . I 4 HOH A 138 738 167 HOH HOH . I 4 HOH A 139 739 145 HOH HOH . I 4 HOH A 140 740 143 HOH HOH . I 4 HOH A 141 741 151 HOH HOH . I 4 HOH A 142 742 155 HOH HOH . I 4 HOH A 143 743 152 HOH HOH . I 4 HOH A 144 744 176 HOH HOH . I 4 HOH A 145 745 142 HOH HOH . I 4 HOH A 146 746 138 HOH HOH . I 4 HOH A 147 747 153 HOH HOH . I 4 HOH A 148 748 141 HOH HOH . I 4 HOH A 149 749 147 HOH HOH . I 4 HOH A 150 750 181 HOH HOH . I 4 HOH A 151 751 179 HOH HOH . I 4 HOH A 152 752 109 HOH HOH . I 4 HOH A 153 753 139 HOH HOH . I 4 HOH A 154 754 84 HOH HOH . I 4 HOH A 155 755 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 O7O . . . C 2 9.422 39.878 80.103 1 42.25 ? N1 O7O 502 A 1 HETATM 2 C C2 O7O . . . C 2 9.728 42.056 76.726 1 51.95 ? C2 O7O 502 A 1 HETATM 3 C C4 O7O . . . C 2 10.153 38.859 80.573 1 49.83 ? C4 O7O 502 A 1 HETATM 4 C C5 O7O . . . C 2 8.895 38.905 82.767 1 55.88 ? C5 O7O 502 A 1 HETATM 5 C C6 O7O . . . C 2 9.391 39.401 83.991 1 66.18 ? C6 O7O 502 A 1 HETATM 6 O O1 O7O . . . C 2 10.237 44.279 75.895 1 51.45 ? O1 O7O 502 A 1 HETATM 7 C C3 O7O . . . C 2 10.311 43.447 76.788 1 56.07 ? C3 O7O 502 A 1 HETATM 8 O O O7O . . . C 2 10.913 43.669 77.921 1 62.12 ? O O7O 502 A 1 HETATM 9 S S O7O . . . C 2 8.909 41.731 78.316 1 49.89 ? S O7O 502 A 1 HETATM 10 C C1 O7O . . . C 2 9.671 40.231 78.836 1 46.66 ? C1 O7O 502 A 1 HETATM 11 N N O7O . . . C 2 10.518 39.652 77.987 1 40.22 ? N O7O 502 A 1 HETATM 12 C C15 O7O . . . C 2 11.105 38.174 79.804 1 45.19 ? C15 O7O 502 A 1 HETATM 13 C C O7O . . . C 2 11.202 38.639 78.503 1 43.16 ? C O7O 502 A 1 HETATM 14 CL CL O7O . . . C 2 12.276 37.825 77.397 1 49.03 ? CL O7O 502 A 1 HETATM 15 N N2 O7O . . . C 2 9.892 38.536 81.87 1 49.85 ? N2 O7O 502 A 1 HETATM 16 C C14 O7O . . . C 2 7.561 39.066 82.413 1 48.76 ? C14 O7O 502 A 1 HETATM 17 C C13 O7O . . . C 2 6.689 39.669 83.303 1 50.7 ? C13 O7O 502 A 1 HETATM 18 C C12 O7O . . . C 2 7.155 40.173 84.506 1 61.43 ? C12 O7O 502 A 1 HETATM 19 C C11 O7O . . . C 2 8.503 40.072 84.854 1 62.61 ? C11 O7O 502 A 1 HETATM 20 C C10 O7O . . . C 2 8.998 40.755 86.107 1 68.85 ? C10 O7O 502 A 1 HETATM 21 C C9 O7O . . . C 2 10.399 40.325 86.522 1 69.14 ? C9 O7O 502 A 1 HETATM 22 C C8 O7O . . . C 2 11.333 40.304 85.332 1 67.97 ? C8 O7O 502 A 1 HETATM 23 C C7 O7O . . . C 2 10.863 39.27 84.332 1 68.56 ? C7 O7O 502 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 23 #