data_8AU3 # _model_server_result.job_id LhRocY1Nvh9yJeOvFsPpKg _model_server_result.datetime_utc '2024-12-28 08:37:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8au3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1401}' # _entry.id 8AU3 # _exptl.entry_id 8AU3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 492.572 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[1-(3-{5-[(1-methylpiperidin-4-yl)methoxy]pyrimidin-2-yl}benzyl)-6-oxo-1,6-dihydropyridazin-3-yl]benzonitrile _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8AU3 _cell.length_a 116.676 _cell.length_b 139.12 _cell.length_c 240.116 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AU3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 22 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,G 1 1 B,D,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C29 H28 N6 O2' _chem_comp.formula_weight 492.572 _chem_comp.id 3E8 _chem_comp.mon_nstd_flag . _chem_comp.name 3-[1-(3-{5-[(1-methylpiperidin-4-yl)methoxy]pyrimidin-2-yl}benzyl)-6-oxo-1,6-dihydropyridazin-3-yl]benzonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C30 C32 3E8 sing 1 n n C30 C29 3E8 sing 2 n n C32 N34 3E8 sing 3 n n O26 C25 3E8 sing 4 n n O26 C28 3E8 sing 5 n n C24 C25 3E8 doub 6 n y C24 N22 3E8 sing 7 n y C25 C23 3E8 sing 8 n y N22 C20 3E8 doub 9 n y C28 C29 3E8 sing 10 n n C23 N21 3E8 doub 11 n y C29 C31 3E8 sing 12 n n C20 N21 3E8 sing 13 n y C20 C18 3E8 sing 14 n n C16 C18 3E8 doub 15 n y C16 C14 3E8 sing 16 n y C18 C19 3E8 sing 17 n y N34 C35 3E8 sing 18 n n N34 C33 3E8 sing 19 n n C13 C14 3E8 sing 20 n n C13 N11 3E8 sing 21 n n C5 C3 3E8 doub 22 n y C5 C6 3E8 sing 23 n y C14 C15 3E8 doub 24 n y C3 C1 3E8 sing 25 n y C19 C17 3E8 doub 26 n y C6 C4 3E8 doub 27 n y C31 C33 3E8 sing 28 n n C15 C17 3E8 sing 29 n y N9 N11 3E8 sing 30 n n N9 C7 3E8 doub 31 n n N11 C12 3E8 sing 32 n n C1 C7 3E8 sing 33 n n C1 C2 3E8 doub 34 n y C4 C2 3E8 sing 35 n y C4 C36 3E8 sing 36 n n C7 C8 3E8 sing 37 n n C36 N37 3E8 trip 38 n n C12 O27 3E8 doub 39 n n C12 C10 3E8 sing 40 n n C8 C10 3E8 doub 41 n n C2 H1 3E8 sing 42 n n C3 H2 3E8 sing 43 n n C5 H3 3E8 sing 44 n n C6 H4 3E8 sing 45 n n C8 H5 3E8 sing 46 n n C15 H6 3E8 sing 47 n n C16 H7 3E8 sing 48 n n C17 H8 3E8 sing 49 n n C19 H9 3E8 sing 50 n n C23 H10 3E8 sing 51 n n C24 H11 3E8 sing 52 n n C30 H12 3E8 sing 53 n n C30 H13 3E8 sing 54 n n C31 H14 3E8 sing 55 n n C31 H15 3E8 sing 56 n n C32 H16 3E8 sing 57 n n C32 H17 3E8 sing 58 n n C33 H18 3E8 sing 59 n n C33 H19 3E8 sing 60 n n C35 H20 3E8 sing 61 n n C35 H21 3E8 sing 62 n n C35 H22 3E8 sing 63 n n C10 H23 3E8 sing 64 n n C13 H24 3E8 sing 65 n n C13 H25 3E8 sing 66 n n C28 H26 3E8 sing 67 n n C28 H27 3E8 sing 68 n n C29 H28 3E8 sing 69 n n # _atom_sites.entry_id 8AU3 _atom_sites.fract_transf_matrix[1][1] 0.008571 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007188 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004165 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 3E8 A 1 1401 1 3E8 INX . D 2 3E8 B 1 1401 2 3E8 INX . E 3 PG4 B 1 1402 1 PG4 PG4 . F 4 PEG B 1 1403 2 PEG PEG . G 5 HOH A 1 1501 42 HOH HOH . G 5 HOH A 2 1502 20 HOH HOH . G 5 HOH A 3 1503 25 HOH HOH . G 5 HOH A 4 1504 11 HOH HOH . G 5 HOH A 5 1505 83 HOH HOH . G 5 HOH A 6 1506 4 HOH HOH . G 5 HOH A 7 1507 16 HOH HOH . G 5 HOH A 8 1508 21 HOH HOH . G 5 HOH A 9 1509 2 HOH HOH . G 5 HOH A 10 1510 9 HOH HOH . G 5 HOH A 11 1511 71 HOH HOH . G 5 HOH A 12 1512 29 HOH HOH . G 5 HOH A 13 1513 79 HOH HOH . G 5 HOH A 14 1514 7 HOH HOH . G 5 HOH A 15 1515 91 HOH HOH . G 5 HOH A 16 1516 82 HOH HOH . G 5 HOH A 17 1517 43 HOH HOH . G 5 HOH A 18 1518 87 HOH HOH . G 5 HOH A 19 1519 93 HOH HOH . G 5 HOH A 20 1520 45 HOH HOH . G 5 HOH A 21 1521 94 HOH HOH . G 5 HOH A 22 1522 44 HOH HOH . G 5 HOH A 23 1523 8 HOH HOH . G 5 HOH A 24 1524 49 HOH HOH . G 5 HOH A 25 1525 80 HOH HOH . G 5 HOH A 26 1526 81 HOH HOH . G 5 HOH A 27 1527 40 HOH HOH . G 5 HOH A 28 1528 98 HOH HOH . G 5 HOH A 29 1529 6 HOH HOH . G 5 HOH A 30 1530 89 HOH HOH . G 5 HOH A 31 1531 51 HOH HOH . G 5 HOH A 32 1532 84 HOH HOH . G 5 HOH A 33 1533 56 HOH HOH . G 5 HOH A 34 1534 78 HOH HOH . G 5 HOH A 35 1535 92 HOH HOH . G 5 HOH A 36 1536 26 HOH HOH . G 5 HOH A 37 1537 85 HOH HOH . G 5 HOH A 38 1538 86 HOH HOH . G 5 HOH A 39 1539 53 HOH HOH . G 5 HOH A 40 1540 102 HOH HOH . G 5 HOH A 41 1541 90 HOH HOH . G 5 HOH A 42 1542 59 HOH HOH . G 5 HOH A 43 1543 55 HOH HOH . G 5 HOH A 44 1544 58 HOH HOH . G 5 HOH A 45 1545 88 HOH HOH . H 5 HOH B 1 1501 15 HOH HOH . H 5 HOH B 2 1502 69 HOH HOH . H 5 HOH B 3 1503 46 HOH HOH . H 5 HOH B 4 1504 68 HOH HOH . H 5 HOH B 5 1505 38 HOH HOH . H 5 HOH B 6 1506 73 HOH HOH . H 5 HOH B 7 1507 35 HOH HOH . H 5 HOH B 8 1508 96 HOH HOH . H 5 HOH B 9 1509 19 HOH HOH . H 5 HOH B 10 1510 12 HOH HOH . H 5 HOH B 11 1511 50 HOH HOH . H 5 HOH B 12 1512 13 HOH HOH . H 5 HOH B 13 1513 34 HOH HOH . H 5 HOH B 14 1514 5 HOH HOH . H 5 HOH B 15 1515 3 HOH HOH . H 5 HOH B 16 1516 70 HOH HOH . H 5 HOH B 17 1517 100 HOH HOH . H 5 HOH B 18 1518 24 HOH HOH . H 5 HOH B 19 1519 37 HOH HOH . H 5 HOH B 20 1520 66 HOH HOH . H 5 HOH B 21 1521 41 HOH HOH . H 5 HOH B 22 1522 47 HOH HOH . H 5 HOH B 23 1523 22 HOH HOH . H 5 HOH B 24 1524 52 HOH HOH . H 5 HOH B 25 1525 65 HOH HOH . H 5 HOH B 26 1526 75 HOH HOH . H 5 HOH B 27 1527 60 HOH HOH . H 5 HOH B 28 1528 63 HOH HOH . H 5 HOH B 29 1529 74 HOH HOH . H 5 HOH B 30 1530 67 HOH HOH . H 5 HOH B 31 1531 95 HOH HOH . H 5 HOH B 32 1532 72 HOH HOH . H 5 HOH B 33 1533 64 HOH HOH . H 5 HOH B 34 1534 54 HOH HOH . H 5 HOH B 35 1535 101 HOH HOH . H 5 HOH B 36 1536 97 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 3E8 . . . C 2 57.938 19.629 20.03 1 51.23 ? C1 3E8 1401 A 1 HETATM 2 C C2 3E8 . . . C 2 57.456 18.313 19.945 1 56.04 ? C2 3E8 1401 A 1 HETATM 3 C C3 3E8 . . . C 2 58.946 19.898 20.995 1 58.91 ? C3 3E8 1401 A 1 HETATM 4 C C4 3E8 . . . C 2 57.979 17.304 20.767 1 56.12 ? C4 3E8 1401 A 1 HETATM 5 C C5 3E8 . . . C 2 59.455 18.893 21.812 1 54.47 ? C5 3E8 1401 A 1 HETATM 6 C C6 3E8 . . . C 2 58.981 17.595 21.708 1 57.48 ? C6 3E8 1401 A 1 HETATM 7 C C7 3E8 . . . C 2 57.397 20.728 19.163 1 43.61 ? C7 3E8 1401 A 1 HETATM 8 C C8 3E8 . . . C 2 56.109 20.704 18.534 1 49.83 ? C8 3E8 1401 A 1 HETATM 9 C C12 3E8 . . . C 2 56.584 22.894 17.638 1 50.59 ? C12 3E8 1401 A 1 HETATM 10 C C15 3E8 . . . C 2 57.837 25.9 19.553 1 51.89 ? C15 3E8 1401 A 1 HETATM 11 C C16 3E8 . . . C 2 59.036 24.162 20.693 1 50.66 ? C16 3E8 1401 A 1 HETATM 12 C C17 3E8 . . . C 2 57.626 26.551 20.767 1 48.08 ? C17 3E8 1401 A 1 HETATM 13 C C18 3E8 . . . C 2 58.868 24.817 21.924 1 45.16 ? C18 3E8 1401 A 1 HETATM 14 C C19 3E8 . . . C 2 58.117 26.012 21.951 1 44.46 ? C19 3E8 1401 A 1 HETATM 15 N N22 3E8 . . . C 2 59.636 22.871 23.18 1 50.92 ? N22 3E8 1401 A 1 HETATM 16 C C23 3E8 . . . C 2 59.58 24.242 25.486 1 55.43 ? C23 3E8 1401 A 1 HETATM 17 C C24 3E8 . . . C 2 59.97 22.22 24.286 1 47.99 ? C24 3E8 1401 A 1 HETATM 18 O O26 3E8 . . . C 2 60.306 22.182 26.623 1 65.63 ? O26 3E8 1401 A 1 HETATM 19 C C30 3E8 . . . C 2 59.184 20.657 28.833 1 77.57 ? C30 3E8 1401 A 1 HETATM 20 C C31 3E8 . . . C 2 61.706 20.826 28.876 1 80.34 ? C31 3E8 1401 A 1 HETATM 21 C C32 3E8 . . . C 2 59.258 19.569 29.91 1 78.12 ? C32 3E8 1401 A 1 HETATM 22 C C33 3E8 . . . C 2 61.718 19.704 29.927 1 85.11 ? C33 3E8 1401 A 1 HETATM 23 C C35 3E8 . . . C 2 60.595 17.688 30.69 1 89.34 ? C35 3E8 1401 A 1 HETATM 24 C C36 3E8 . . . C 2 57.464 15.983 20.631 1 55.31 ? C36 3E8 1401 A 1 HETATM 25 N N37 3E8 . . . C 2 57.082 14.918 20.549 1 64.03 ? N37 3E8 1401 A 1 HETATM 26 N N9 3E8 . . . C 2 58.131 21.807 18.966 1 47.04 ? N9 3E8 1401 A 1 HETATM 27 N N11 3E8 . . . C 2 57.799 22.848 18.259 1 55.48 ? N11 3E8 1401 A 1 HETATM 28 O O27 3E8 . . . C 2 56.228 23.838 16.966 1 53.53 ? O27 3E8 1401 A 1 HETATM 29 C C10 3E8 . . . C 2 55.705 21.779 17.77 1 48.08 ? C10 3E8 1401 A 1 HETATM 30 C C13 3E8 . . . C 2 58.778 23.96 18.214 1 57.74 ? C13 3E8 1401 A 1 HETATM 31 C C14 3E8 . . . C 2 58.551 24.707 19.512 1 51.75 ? C14 3E8 1401 A 1 HETATM 32 C C20 3E8 . . . C 2 59.322 24.173 23.181 1 46.09 ? C20 3E8 1401 A 1 HETATM 33 C C25 3E8 . . . C 2 59.951 22.887 25.514 1 53.32 ? C25 3E8 1401 A 1 HETATM 34 N N21 3E8 . . . C 2 59.251 24.822 24.338 1 51.37 ? N21 3E8 1401 A 1 HETATM 35 C C28 3E8 . . . C 2 60.343 22.728 27.945 1 73.7 ? C28 3E8 1401 A 1 HETATM 36 C C29 3E8 . . . C 2 60.387 21.612 28.994 1 74.83 ? C29 3E8 1401 A 1 HETATM 37 N N34 3E8 . . . C 2 60.532 18.832 29.769 1 87.12 ? N34 3E8 1401 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 526 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 37 #